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dlight/gist:9c4854d9ab49e171f6da39335fd31d48

Created August 12, 2019 17:31
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gistfile1.txt
conda env create -f environment.yml
Collecting package metadata (repodata.json): done
Solving environment: done
==> WARNING: A newer version of conda exists. <==
current version: 4.7.10
latest version: 4.7.11
Please update conda by running
$ conda update -n base -c defaults conda
Preparing transaction: done
Verifying transaction: done
Executing transaction: - b'Enabling nb_conda_kernels...\nStatus: enabled\n'
done
Ran pip subprocess with arguments:
['/home/a/.conda/envs/devito/bin/python', '-m', 'pip', 'install', '-U', '-r', '/home/code/lapps/devito/condaenv.2q8_2xf5.requirements.txt']
Pip subprocess output:
9.1.0
Collecting git+https://github.com/inducer/codepy (from -r /home/code/lapps/devito/condaenv.2q8_2xf5.requirements.txt (line 1))
Cloning https://github.com/inducer/codepy to /tmp/pip-req-build-pxb6mv30
Collecting pyzfp>=0.2 (from -r /home/code/lapps/devito/condaenv.2q8_2xf5.requirements.txt (line 2))
Using cached https://files.pythonhosted.org/packages/33/ff/1390221dc5ed78eb6573613a76927baeea02c31e73b9db91353b8834bb95/pyzfp-0.3.tar.gz
Collecting pyrevolve>=2.1.3 (from -r /home/code/lapps/devito/condaenv.2q8_2xf5.requirements.txt (line 3))
Using cached https://files.pythonhosted.org/packages/0d/c4/63a36aa56969de861e181b86ebc1aba6764e9d2566c42e4faf1f360cb3cc/pyrevolve-2.1.3.tar.gz
Collecting py-cpuinfo (from -r /home/code/lapps/devito/condaenv.2q8_2xf5.requirements.txt (line 4))
Collecting anytree>=2.4.3 (from -r /home/code/lapps/devito/condaenv.2q8_2xf5.requirements.txt (line 5))
Requirement already satisfied, skipping upgrade: pytools>=2015.1.2 in /shadow/a/conda/envs/devito/lib/python3.7/site-packages (from codepy==2019.1->-r /home/code/lapps/devito/condaenv.2q8_2xf5.requirements.txt (line 1)) (2019.1.1)
Requirement already satisfied, skipping upgrade: numpy>=1.6 in /shadow/a/conda/envs/devito/lib/python3.7/site-packages (from codepy==2019.1->-r /home/code/lapps/devito/condaenv.2q8_2xf5.requirements.txt (line 1)) (1.16.4)
Requirement already satisfied, skipping upgrade: appdirs>=1.4.0 in /shadow/a/conda/envs/devito/lib/python3.7/site-packages (from codepy==2019.1->-r /home/code/lapps/devito/condaenv.2q8_2xf5.requirements.txt (line 1)) (1.4.3)
Requirement already satisfied, skipping upgrade: six in /shadow/a/conda/envs/devito/lib/python3.7/site-packages (from codepy==2019.1->-r /home/code/lapps/devito/condaenv.2q8_2xf5.requirements.txt (line 1)) (1.12.0)
Requirement already satisfied, skipping upgrade: cgen in /shadow/a/conda/envs/devito/lib/python3.7/site-packages (from codepy==2019.1->-r /home/code/lapps/devito/condaenv.2q8_2xf5.requirements.txt (line 1)) (2017.1)
Collecting blosc (from pyrevolve>=2.1.3->-r /home/code/lapps/devito/condaenv.2q8_2xf5.requirements.txt (line 3))
Using cached https://files.pythonhosted.org/packages/6d/3b/2b707cd330a205ba5c69b5e8bfa9c05691442e45ce9ce882c4c8d343e61a/blosc-1.8.1.tar.gz
Collecting contexttimer (from pyrevolve>=2.1.3->-r /home/code/lapps/devito/condaenv.2q8_2xf5.requirements.txt (line 3))
Requirement already satisfied, skipping upgrade: decorator>=3.2.0 in /shadow/a/conda/envs/devito/lib/python3.7/site-packages (from pytools>=2015.1.2->codepy==2019.1->-r /home/code/lapps/devito/condaenv.2q8_2xf5.requirements.txt (line 1)) (4.4.0)
Building wheels for collected packages: pyzfp, pyrevolve, codepy, blosc
Building wheel for pyzfp (setup.py): started
Building wheel for pyzfp (setup.py): finished with status 'error'
Running setup.py clean for pyzfp
Building wheel for pyrevolve (setup.py): started
Building wheel for pyrevolve (setup.py): finished with status 'error'
Running setup.py clean for pyrevolve
Building wheel for codepy (setup.py): started
Building wheel for codepy (setup.py): finished with status 'done'
Stored in directory: /tmp/pip-ephem-wheel-cache-3pm8n1vo/wheels/8b/e5/f8/5fa48f28841d0433a91e37d17a60fb9d8d5d20e603ebe4419b
Building wheel for blosc (setup.py): started
Building wheel for blosc (setup.py): still running...
Building wheel for blosc (setup.py): finished with status 'error'
Running setup.py clean for blosc
Successfully built codepy
Failed to build pyzfp pyrevolve blosc
Installing collected packages: pyzfp, blosc, contexttimer, pyrevolve, py-cpuinfo, anytree, codepy
Running setup.py install for pyzfp: started
Running setup.py install for pyzfp: finished with status 'done'
Running setup.py install for blosc: started
Running setup.py install for blosc: still running...
Running setup.py install for blosc: finished with status 'error'
Pip subprocess error:
Running command git clone -q https://github.com/inducer/codepy /tmp/pip-req-build-pxb6mv30
ERROR: Complete output from command /home/a/.conda/envs/devito/bin/python -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-install-2669ss_4/pyzfp/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-sh4mhpcq --python-tag cp37:
ERROR: 9.1.0
running bdist_wheel
running build
running build_ext
creating tmp
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/a/.conda/envs/devito/include/python3.7m -c /tmp/tmpy9d6gd9z.cpp -o tmp/tmpy9d6gd9z.o -fopenmp
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
Will execute the following command in with subprocess.Popen:
make
b"git clone -b release0.5.5 https://github.com/LLNL/zfp.git zfp-0.5.5\nCloning into 'zfp-0.5.5'...\ncd zfp-0.5.5 && make ZFP_WITH_OPENMP=0\nmake[1]: Entering directory '/tmp/pip-install-2669ss_4/pyzfp/zfp-0.5.5'\nstatic\nrm -f ../lib/libzfp.a ../lib/libzfp.so bitstream.o decode1i.o decode1l.o decode1f.o decode1d.o encode1i.o encode1l.o encode1f.o encode1d.o decode2i.o decode2l.o decode2f.o decode2d.o encode2i.o encode2l.o encode2f.o encode2d.o decode3i.o decode3l.o decode3f.o decode3d.o encode3i.o encode3l.o encode3f.o encode3d.o decode4i.o decode4l.o decode4f.o decode4d.o encode4i.o encode4l.o encode4f.o encode4d.o zfp.o\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c bitstream.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c decode1i.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c decode1l.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c decode1f.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c decode1d.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c encode1i.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c encode1l.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c encode1f.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c encode1d.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c decode2i.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c decode2l.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c decode2f.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c decode2d.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c encode2i.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c encode2l.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c encode2f.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c encode2d.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c decode3i.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c decode3l.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c decode3f.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c decode3d.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c encode3i.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c encode3l.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c encode3f.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c encode3d.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c decode4i.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c decode4l.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c decode4f.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c decode4d.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c encode4i.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c encode4l.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c encode4f.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c encode4d.c\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include -c zfp.c\nmkdir -p ../lib\nrm -f ../lib/libzfp.a\nar rc ../lib/libzfp.a bitstream.o decode1i.o decode1l.o decode1f.o decode1d.o encode1i.o encode1l.o encode1f.o encode1d.o decode2i.o decode2l.o decode2f.o decode2d.o encode2i.o encode2l.o encode2f.o encode2d.o decode3i.o decode3l.o decode3f.o decode3d.o encode3i.o encode3l.o encode3f.o encode3d.o decode4i.o decode4l.o decode4f.o decode4d.o encode4i.o encode4l.o encode4f.o encode4d.o zfp.o\nrm -f ../bin/zfp fields.o\nmkdir -p ../bin\ngcc -std=c99 -O3 -fPIC -Wall -Wextra -pedantic -I../include zfp.c -L../lib -lzfp -lm -o ../bin/zfp\nrm -f ../bin/testzfp ../bin/testviews\ng++ -std=c++98 -O3 -fPIC -Wall -Wextra -pedantic -I../include -I../array testzfp.cpp -L../lib -lzfp -o ../bin/testzfp\ng++ -std=c++98 -O3 -fPIC -Wall -Wextra -pedantic -I../include -I../array testviews.cpp -L../lib -lzfp -o ../bin/testviews\nmake[1]: Leaving dire
building 'pyzfp' extension
creating build
creating build/temp.linux-x86_64-3.7
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Izfp-0.5.5/include -I/home/a/.conda/envs/devito/lib/python3.7/site-packages/numpy/core/include -I/home/a/.conda/envs/devito/include/python3.7m -c pyzfp.c -o build/temp.linux-x86_64-3.7/pyzfp.o -fopenmp
In file included from /home/a/.conda/envs/devito/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1824,
from /home/a/.conda/envs/devito/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /home/a/.conda/envs/devito/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from pyzfp.c:624:
/home/a/.conda/envs/devito/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
In file included from pyzfp.c:628:
zfp-0.5.5/include/zfp.h:361:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
361 | zfp_field_alloc();
| ^~~~~~~~~~~~~~~
creating build/lib.linux-x86_64-3.7
gcc -pthread -shared -L/home/a/.conda/envs/devito/lib -Wl,-rpath=/home/a/.conda/envs/devito/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.7/pyzfp.o -Lzfp-0.5.5/lib -lzfp -o build/lib.linux-x86_64-3.7/pyzfp.cpython-@PYVERNODOTS@m-x86_64-linux-gnu.so -fopenmp
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/wheel
copying build/lib.linux-x86_64-3.7/pyzfp.cpython-@PYVERNODOTS@m-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel
running install_egg_info
running egg_info
writing pyzfp.egg-info/PKG-INFO
writing dependency_links to pyzfp.egg-info/dependency_links.txt
writing top-level names to pyzfp.egg-info/top_level.txt
reading manifest file 'pyzfp.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'pyzfp.egg-info/SOURCES.txt'
Copying pyzfp.egg-info to build/bdist.linux-x86_64/wheel/pyzfp-0.3-py3.7.egg-info
running install_scripts
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-install-2669ss_4/pyzfp/setup.py", line 157, in <module>
setup(**configuration)
File "/home/a/.conda/envs/devito/lib/python3.7/site-packages/setuptools/__init__.py", line 145, in setup
return distutils.core.setup(**attrs)
File "/home/a/.conda/envs/devito/lib/python3.7/distutils/core.py", line 148, in setup
dist.run_commands()
File "/home/a/.conda/envs/devito/lib/python3.7/distutils/dist.py", line 966, in run_commands
self.run_command(cmd)
File "/home/a/.conda/envs/devito/lib/python3.7/distutils/dist.py", line 985, in run_command
cmd_obj.run()
File "/home/a/.conda/envs/devito/lib/python3.7/site-packages/wheel/bdist_wheel.py", line 230, in run
impl_tag, abi_tag, plat_tag = self.get_tag()
File "/home/a/.conda/envs/devito/lib/python3.7/site-packages/wheel/bdist_wheel.py", line 179, in get_tag
assert tag == supported_tags[0], "%s != %s" % (tag, supported_tags[0])
AssertionError: ('cp37', 'cp@pyvernodots@m', 'linux_x86_64') != ('cp37', 'cp@PYVERNODOTS@m', 'linux_x86_64')
----------------------------------------
ERROR: Failed building wheel for pyzfp
ERROR: Complete output from command /home/a/.conda/envs/devito/bin/python -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-install-2669ss_4/pyrevolve/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ksdmbcab --python-tag cp37:
ERROR: 9.1.0
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.7
creating build/lib.linux-x86_64-3.7/pyrevolve
copying pyrevolve/tools.py -> build/lib.linux-x86_64-3.7/pyrevolve
copying pyrevolve/storage.py -> build/lib.linux-x86_64-3.7/pyrevolve
copying pyrevolve/profiling.py -> build/lib.linux-x86_64-3.7/pyrevolve
copying pyrevolve/_version.py -> build/lib.linux-x86_64-3.7/pyrevolve
copying pyrevolve/compression.py -> build/lib.linux-x86_64-3.7/pyrevolve
copying pyrevolve/pyrevolve.py -> build/lib.linux-x86_64-3.7/pyrevolve
copying pyrevolve/custom_pickle.py -> build/lib.linux-x86_64-3.7/pyrevolve
copying pyrevolve/__init__.py -> build/lib.linux-x86_64-3.7/pyrevolve
copying pyrevolve/logger.py -> build/lib.linux-x86_64-3.7/pyrevolve
copying pyrevolve/schedulers.py -> build/lib.linux-x86_64-3.7/pyrevolve
UPDATING build/lib.linux-x86_64-3.7/pyrevolve/_version.py
set build/lib.linux-x86_64-3.7/pyrevolve/_version.py to '2.1.3'
running build_ext
building 'pyrevolve.crevolve' extension
creating build/temp.linux-x86_64-3.7
creating build/temp.linux-x86_64-3.7/pyrevolve
creating build/temp.linux-x86_64-3.7/src
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I./pyrevolve -I. -Ipyrevolve -I/home/a/.conda/envs/devito/include/python3.7m -c pyrevolve/crevolve.cpp -o build/temp.linux-x86_64-3.7/pyrevolve/crevolve.o
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
In file included from pyrevolve/../include/revolve_c.h:6,
from pyrevolve/crevolve.cpp:628:
pyrevolve/../include/revolve.h: In destructor ‘Revolve::~Revolve()’:
pyrevolve/../include/revolve.h:441:22: warning: deleting object of polymorphic class type ‘Schedule’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
441 | ~Revolve() { delete f, delete checkpoint; }
| ^
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I./pyrevolve -I. -Ipyrevolve -I/home/a/.conda/envs/devito/include/python3.7m -c src/revolve_c.cpp -o build/temp.linux-x86_64-3.7/src/revolve_c.o
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
In file included from src/../include/revolve_c.h:6,
from src/revolve_c.cpp:1:
src/../include/revolve.h: In destructor ‘Revolve::~Revolve()’:
src/../include/revolve.h:441:22: warning: deleting object of polymorphic class type ‘Schedule’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
441 | ~Revolve() { delete f, delete checkpoint; }
| ^
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I./pyrevolve -I. -Ipyrevolve -I/home/a/.conda/envs/devito/include/python3.7m -c src/revolve.cpp -o build/temp.linux-x86_64-3.7/src/revolve.o
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
In file included from src/revolve.cpp:23:
src/../include/revolve.h: In destructor ‘Revolve::~Revolve()’:
src/../include/revolve.h:441:22: warning: deleting object of polymorphic class type ‘Schedule’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
441 | ~Revolve() { delete f, delete checkpoint; }
| ^
src/revolve.cpp: In member function ‘ACTION::action Revolve::revolve(int*, int*, int*, int, int*)’:
src/revolve.cpp:1247:12: warning: deleting object of polymorphic class type ‘Schedule’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
1247 | delete f;
| ^
src/revolve.cpp:1254:12: warning: deleting object of polymorphic class type ‘Schedule’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
1254 | delete f;
| ^
src/revolve.cpp: In member function ‘ACTION::action Revolve::revolve()’:
src/revolve.cpp:1273:12: warning: deleting object of polymorphic class type ‘Schedule’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
1273 | delete f;
| ^
src/revolve.cpp:1280:12: warning: deleting object of polymorphic class type ‘Schedule’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
1280 | delete f;
| ^
src/revolve.cpp: In member function ‘void Revolve::turn(int)’:
src/revolve.cpp:1304:12: warning: deleting object of polymorphic class type ‘Schedule’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
1304 | delete f;
| ^
src/revolve.cpp:1306:12: warning: deleting object of polymorphic class type ‘Online’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
1306 | delete g;
| ^
src/revolve.cpp: In member function ‘int Revolve::get_r(int, int)’:
src/revolve.cpp:1400:20: warning: unused variable ‘num’ [-Wunused-variable]
1400 | int reps, range, num;
| ^~~
src/revolve.cpp: In member function ‘int Revolve::get_r()’:
src/revolve.cpp:1431:20: warning: unused variable ‘num’ [-Wunused-variable]
1431 | int reps, range, num;
| ^~~
g++ -pthread -shared -L/home/a/.conda/envs/devito/lib -Wl,-rpath=/home/a/.conda/envs/devito/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.7/pyrevolve/crevolve.o build/temp.linux-x86_64-3.7/src/revolve_c.o build/temp.linux-x86_64-3.7/src/revolve.o -o build/lib.linux-x86_64-3.7/pyrevolve/crevolve.cpython-@PYVERNODOTS@m-x86_64-linux-gnu.so
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/pyrevolve
copying build/lib.linux-x86_64-3.7/pyrevolve/crevolve.cpython-@PYVERNODOTS@m-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/pyrevolve
copying build/lib.linux-x86_64-3.7/pyrevolve/_version.py -> build/bdist.linux-x86_64/wheel/pyrevolve
copying build/lib.linux-x86_64-3.7/pyrevolve/schedulers.py -> build/bdist.linux-x86_64/wheel/pyrevolve
copying build/lib.linux-x86_64-3.7/pyrevolve/logger.py -> build/bdist.linux-x86_64/wheel/pyrevolve
copying build/lib.linux-x86_64-3.7/pyrevolve/__init__.py -> build/bdist.linux-x86_64/wheel/pyrevolve
copying build/lib.linux-x86_64-3.7/pyrevolve/custom_pickle.py -> build/bdist.linux-x86_64/wheel/pyrevolve
copying build/lib.linux-x86_64-3.7/pyrevolve/pyrevolve.py -> build/bdist.linux-x86_64/wheel/pyrevolve
copying build/lib.linux-x86_64-3.7/pyrevolve/compression.py -> build/bdist.linux-x86_64/wheel/pyrevolve
copying build/lib.linux-x86_64-3.7/pyrevolve/profiling.py -> build/bdist.linux-x86_64/wheel/pyrevolve
copying build/lib.linux-x86_64-3.7/pyrevolve/storage.py -> build/bdist.linux-x86_64/wheel/pyrevolve
copying build/lib.linux-x86_64-3.7/pyrevolve/tools.py -> build/bdist.linux-x86_64/wheel/pyrevolve
running install_egg_info
running egg_info
writing pyrevolve.egg-info/PKG-INFO
writing dependency_links to pyrevolve.egg-info/dependency_links.txt
writing requirements to pyrevolve.egg-info/requires.txt
writing top-level names to pyrevolve.egg-info/top_level.txt
reading manifest file 'pyrevolve.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'pyrevolve.egg-info/SOURCES.txt'
Copying pyrevolve.egg-info to build/bdist.linux-x86_64/wheel/pyrevolve-2.1.3-py3.7.egg-info
running install_scripts
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-install-2669ss_4/pyrevolve/setup.py", line 59, in <module>
setup(**configuration)
File "/home/a/.conda/envs/devito/lib/python3.7/site-packages/setuptools/__init__.py", line 145, in setup
return distutils.core.setup(**attrs)
File "/home/a/.conda/envs/devito/lib/python3.7/distutils/core.py", line 148, in setup
dist.run_commands()
File "/home/a/.conda/envs/devito/lib/python3.7/distutils/dist.py", line 966, in run_commands
self.run_command(cmd)
File "/home/a/.conda/envs/devito/lib/python3.7/distutils/dist.py", line 985, in run_command
cmd_obj.run()
File "/home/a/.conda/envs/devito/lib/python3.7/site-packages/wheel/bdist_wheel.py", line 230, in run
impl_tag, abi_tag, plat_tag = self.get_tag()
File "/home/a/.conda/envs/devito/lib/python3.7/site-packages/wheel/bdist_wheel.py", line 179, in get_tag
assert tag == supported_tags[0], "%s != %s" % (tag, supported_tags[0])
AssertionError: ('cp37', 'cp@pyvernodots@m', 'linux_x86_64') != ('cp37', 'cp@PYVERNODOTS@m', 'linux_x86_64')
----------------------------------------
ERROR: Failed building wheel for pyrevolve
ERROR: Complete output from command /home/a/.conda/envs/devito/bin/python -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-install-2669ss_4/blosc/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-w3o169o4 --python-tag cp37:
ERROR: SSE2 detected
AVX2 detected
9.1.0
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.7
creating build/lib.linux-x86_64-3.7/blosc
copying blosc/version.py -> build/lib.linux-x86_64-3.7/blosc
copying blosc/toplevel.py -> build/lib.linux-x86_64-3.7/blosc
copying blosc/test.py -> build/lib.linux-x86_64-3.7/blosc
copying blosc/__init__.py -> build/lib.linux-x86_64-3.7/blosc
running build_clib
building 'lz4' library
creating build/temp.linux-x86_64-3.7
creating build/temp.linux-x86_64-3.7/c-blosc
creating build/temp.linux-x86_64-3.7/c-blosc/internal-complibs
creating build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/lz4-1.8.3
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/lz4-1.8.3/lz4hc.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/lz4-1.8.3/lz4hc.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/lz4-1.8.3/lz4.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/lz4-1.8.3/lz4.o
ar rc build/temp.linux-x86_64-3.7/liblz4.a build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/lz4-1.8.3/lz4hc.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/lz4-1.8.3/lz4.o
building 'zlib' library
creating build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/zlib-1.2.8/zutil.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/zutil.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/zlib-1.2.8/uncompr.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/uncompr.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/zlib-1.2.8/trees.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/trees.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/zlib-1.2.8/inftrees.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/inftrees.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/zlib-1.2.8/inflate.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/inflate.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/zlib-1.2.8/inffast.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/inffast.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/zlib-1.2.8/infback.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/infback.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/zlib-1.2.8/gzwrite.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/gzwrite.o
c-blosc/internal-complibs/zlib-1.2.8/gzwrite.c: In function ‘gz_comp’:
c-blosc/internal-complibs/zlib-1.2.8/gzwrite.c:84:15: warning: implicit declaration of function ‘write’; did you mean ‘fwrite’? [-Wimplicit-function-declaration]
84 | got = write(state->fd, strm->next_in, strm->avail_in);
| ^~~~~
| fwrite
c-blosc/internal-complibs/zlib-1.2.8/gzwrite.c: In function ‘gzclose_w’:
c-blosc/internal-complibs/zlib-1.2.8/gzwrite.c:573:9: warning: implicit declaration of function ‘close’; did you mean ‘pclose’? [-Wimplicit-function-declaration]
573 | if (close(state->fd) == -1)
| ^~~~~
| pclose
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/zlib-1.2.8/gzread.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/gzread.o
c-blosc/internal-complibs/zlib-1.2.8/gzread.c: In function ‘gz_load’:
c-blosc/internal-complibs/zlib-1.2.8/gzread.c:30:15: warning: implicit declaration of function ‘read’; did you mean ‘fread’? [-Wimplicit-function-declaration]
30 | ret = read(state->fd, buf + *have, len - *have);
| ^~~~
| fread
c-blosc/internal-complibs/zlib-1.2.8/gzread.c: In function ‘gzclose_r’:
c-blosc/internal-complibs/zlib-1.2.8/gzread.c:591:11: warning: implicit declaration of function ‘close’; did you mean ‘pclose’? [-Wimplicit-function-declaration]
591 | ret = close(state->fd);
| ^~~~~
| pclose
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/zlib-1.2.8/gzlib.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/gzlib.o
c-blosc/internal-complibs/zlib-1.2.8/gzlib.c: In function ‘gz_open’:
c-blosc/internal-complibs/zlib-1.2.8/gzlib.c:14:17: warning: implicit declaration of function ‘lseek’; did you mean ‘fseek’? [-Wimplicit-function-declaration]
14 | # define LSEEK lseek
| ^~~~~
c-blosc/internal-complibs/zlib-1.2.8/gzlib.c:256:24: note: in expansion of macro ‘LSEEK’
256 | state->start = LSEEK(state->fd, 0, SEEK_CUR);
| ^~~~~
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/zlib-1.2.8/gzclose.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/gzclose.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/zlib-1.2.8/deflate.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/deflate.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/zlib-1.2.8/crc32.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/crc32.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/zlib-1.2.8/compress.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/compress.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/zlib-1.2.8/adler32.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/adler32.o
ar rc build/temp.linux-x86_64-3.7/libzlib.a build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/zutil.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/uncompr.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/trees.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/inftrees.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/inflate.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/inffast.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/infback.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/gzwrite.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/gzread.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/gzlib.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/gzclose.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/deflate.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/crc32.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/compress.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/adler32.o
building 'zstd' library
creating build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8
creating build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/legacy
creating build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/dictBuilder
creating build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/deprecated
creating build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/decompress
creating build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress
creating build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v07.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v07.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v06.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v06.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v05.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v05.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v04.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v04.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v03.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v03.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v02.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v02.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v01.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v01.o
c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v01.c: In function ‘ZSTD_decompressSequences’:
c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v01.c:1882:35: warning: ‘dumps’ may be used uninitialized in this function [-Wmaybe-uninitialized]
1882 | seqState.dumpsEnd = dumps + dumpsLength;
| ~~~~~~^~~~~~~~~~~~~
c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v01.c:1893:18: warning: ‘nbSeq’ may be used uninitialized in this function [-Wmaybe-uninitialized]
1893 | nbSeq--;
| ~~~~~^~
c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v01.c:1882:35: warning: ‘dumpsLength’ may be used uninitialized in this function [-Wmaybe-uninitialized]
1882 | seqState.dumpsEnd = dumps + dumpsLength;
| ~~~~~~^~~~~~~~~~~~~
c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v01.c: In function ‘ZSTD_decompressBlock’:
c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v01.c:1545:20: warning: ‘*((void *)&litbp+4)’ may be used uninitialized in this function [-Wmaybe-uninitialized]
1545 | size_t rleSize = litbp.origSize;
| ^~~~~~~
c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v01.c:1529:23: note: ‘*((void *)&litbp+4)’ was declared here
1529 | blockProperties_t litbp;
| ^~~~~
c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v01.c:1536:5: warning: ‘litbp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
1536 | switch(litbp.blockType)
| ^~~~~~
c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v01.c:1529:23: note: ‘litbp’ was declared here
1529 | blockProperties_t litbp;
| ^~~~~
c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v01.c: In function ‘ZSTDv01_decompressDCtx’:
c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v01.c:1966:9: warning: ‘blockProperties’ may be used uninitialized in this function [-Wmaybe-uninitialized]
1966 | switch(blockProperties.blockType)
| ^~~~~~
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/dictBuilder/zdict.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/dictBuilder/zdict.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/dictBuilder/fastcover.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/dictBuilder/fastcover.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/dictBuilder/divsufsort.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/dictBuilder/divsufsort.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/dictBuilder/cover.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/dictBuilder/cover.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/deprecated/zbuff_decompress.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/deprecated/zbuff_decompress.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/deprecated/zbuff_compress.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/deprecated/zbuff_compress.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/deprecated/zbuff_common.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/deprecated/zbuff_common.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/decompress/zstd_decompress_block.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/decompress/zstd_decompress_block.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/decompress/zstd_decompress.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/decompress/zstd_decompress.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/decompress/zstd_ddict.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/decompress/zstd_ddict.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/decompress/huf_decompress.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/decompress/huf_decompress.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/compress/zstdmt_compress.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/zstdmt_compress.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_opt.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_opt.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_ldm.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_ldm.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_lazy.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_lazy.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_fast.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_fast.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_double_fast.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_double_fast.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_compress.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_compress.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/compress/huf_compress.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/huf_compress.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/compress/hist.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/hist.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/compress/fse_compress.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/fse_compress.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/common/zstd_common.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/zstd_common.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/common/xxhash.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/xxhash.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/common/threading.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/threading.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/common/pool.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/pool.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/common/fse_decompress.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/fse_decompress.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/common/error_private.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/error_private.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/common/entropy_common.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/entropy_common.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/common/debug.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/debug.o
ar rc build/temp.linux-x86_64-3.7/libzstd.a build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v07.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v06.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v05.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v04.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v03.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v02.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v01.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/dictBuilder/zdict.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/dictBuilder/fastcover.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/dictBuilder/divsufsort.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/dictBuilder/cover.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/deprecated/zbuff_decompress.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/deprecated/zbuff_compress.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/deprecated/zbuff_common.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/decompress/zstd_decompress_block.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/decompress/zstd_decompress.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/decompress/zstd_ddict.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/decompress/huf_decompress.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/zstdmt_compress.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_opt.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_ldm.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_lazy.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_fast.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_double_fast.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_compress.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/huf_compress.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/hist.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/fse_compress.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/zstd_common.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/xxhash.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/threading.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/pool.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/fse_decompress.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/error_private.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/entropy_common.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/debug.o
running build_ext
creating build/temp.linux-x86_64-3.7/build
creating build/temp.linux-x86_64-3.7/build/temp.linux-x86_64-3.7
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/a/.conda/envs/devito/include/python3.7m -c build/temp.linux-x86_64-3.7/test_avx2_empty.c -o build/temp.linux-x86_64-3.7/build/temp.linux-x86_64-3.7/test_avx2_empty.o -mavx2
building 'blosc.blosc_extension' extension
creating build/temp.linux-x86_64-3.7/blosc
creating build/temp.linux-x86_64-3.7/c-blosc/blosc
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_LZ4=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/lz4-1.8.3 -Ic-blosc/internal-complibs/lz4-1.8.3 -Ic-blosc/internal-complibs/zstd-1.3.8/common -Ic-blosc/internal-complibs/zstd-1.3.8 -I/home/a/.conda/envs/devito/include/python3.7m -c blosc/blosc_extension.c -o build/temp.linux-x86_64-3.7/blosc/blosc_extension.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
blosc/blosc_extension.c: In function ‘PyBlosc_compressor_list’:
blosc/blosc_extension.c:104:8: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
104 | list = blosc_list_compressors();
| ^
blosc/blosc_extension.c: In function ‘PyBlosc_code_to_name’:
blosc/blosc_extension.c:123:40: warning: passing argument 2 of ‘blosc_compcode_to_compname’ from incompatible pointer type [-Wincompatible-pointer-types]
123 | if (blosc_compcode_to_compname(code, &name) < 0)
| ^~~~~
| |
| char **
In file included from blosc/blosc_extension.c:13:
c-blosc/blosc/blosc.h:389:72: note: expected ‘const char **’ but argument is of type ‘char **’
389 | BLOSC_EXPORT int blosc_compcode_to_compname(int compcode, const char **compname);
| ~~~~~~~~~~~~~^~~~~~~~
blosc/blosc_extension.c: In function ‘PyBlosc_get_clib’:
blosc/blosc_extension.c:345:8: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
345 | clib = blosc_cbuffer_complib(input);
| ^
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_LZ4=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/lz4-1.8.3 -Ic-blosc/internal-complibs/lz4-1.8.3 -Ic-blosc/internal-complibs/zstd-1.3.8/common -Ic-blosc/internal-complibs/zstd-1.3.8 -I/home/a/.conda/envs/devito/include/python3.7m -c c-blosc/blosc/shuffle.c -o build/temp.linux-x86_64-3.7/c-blosc/blosc/shuffle.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
c-blosc/blosc/shuffle.c:177:1: error: conflicting types for ‘_xgetbv’
177 | _xgetbv(uint32_t xcr) {
| ^~~~~~~
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/9.1.0/include/immintrin.h:43,
from c-blosc/blosc/blosc-common.h:71,
from c-blosc/blosc/shuffle.h:18,
from c-blosc/blosc/shuffle.c:10:
/usr/lib/gcc/x86_64-pc-linux-gnu/9.1.0/include/xsaveintrin.h:60:1: note: previous definition of ‘_xgetbv’ was here
60 | _xgetbv (unsigned int __A)
| ^~~~~~~
In file included from c-blosc/blosc/shuffle.c:11:
c-blosc/blosc/shuffle-generic.h:61:13: warning: ‘unshuffle_generic_inline’ defined but not used [-Wunused-function]
61 | static void unshuffle_generic_inline(const size_t type_size,
| ^~~~~~~~~~~~~~~~~~~~~~~~
c-blosc/blosc/shuffle-generic.h:32:13: warning: ‘shuffle_generic_inline’ defined but not used [-Wunused-function]
32 | static void shuffle_generic_inline(const size_t type_size,
| ^~~~~~~~~~~~~~~~~~~~~~
error: command 'gcc' failed with exit status 1
----------------------------------------
ERROR: Failed building wheel for blosc
ERROR: Complete output from command /home/a/.conda/envs/devito/bin/python -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-install-2669ss_4/blosc/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-mx1r6orc/install-record.txt --single-version-externally-managed --compile:
ERROR: SSE2 detected
AVX2 detected
running install
9.1.0
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.7
creating build/lib.linux-x86_64-3.7/blosc
copying blosc/version.py -> build/lib.linux-x86_64-3.7/blosc
copying blosc/toplevel.py -> build/lib.linux-x86_64-3.7/blosc
copying blosc/test.py -> build/lib.linux-x86_64-3.7/blosc
copying blosc/__init__.py -> build/lib.linux-x86_64-3.7/blosc
running build_clib
building 'lz4' library
creating build/temp.linux-x86_64-3.7
creating build/temp.linux-x86_64-3.7/c-blosc
creating build/temp.linux-x86_64-3.7/c-blosc/internal-complibs
creating build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/lz4-1.8.3
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/lz4-1.8.3/lz4hc.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/lz4-1.8.3/lz4hc.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/lz4-1.8.3/lz4.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/lz4-1.8.3/lz4.o
ar rc build/temp.linux-x86_64-3.7/liblz4.a build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/lz4-1.8.3/lz4hc.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/lz4-1.8.3/lz4.o
building 'zlib' library
creating build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/zlib-1.2.8/zutil.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/zutil.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/zlib-1.2.8/uncompr.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/uncompr.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/zlib-1.2.8/trees.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/trees.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/zlib-1.2.8/inftrees.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/inftrees.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/zlib-1.2.8/inflate.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/inflate.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/zlib-1.2.8/inffast.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/inffast.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/zlib-1.2.8/infback.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/infback.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/zlib-1.2.8/gzwrite.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/gzwrite.o
c-blosc/internal-complibs/zlib-1.2.8/gzwrite.c: In function ‘gz_comp’:
c-blosc/internal-complibs/zlib-1.2.8/gzwrite.c:84:15: warning: implicit declaration of function ‘write’; did you mean ‘fwrite’? [-Wimplicit-function-declaration]
84 | got = write(state->fd, strm->next_in, strm->avail_in);
| ^~~~~
| fwrite
c-blosc/internal-complibs/zlib-1.2.8/gzwrite.c: In function ‘gzclose_w’:
c-blosc/internal-complibs/zlib-1.2.8/gzwrite.c:573:9: warning: implicit declaration of function ‘close’; did you mean ‘pclose’? [-Wimplicit-function-declaration]
573 | if (close(state->fd) == -1)
| ^~~~~
| pclose
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/zlib-1.2.8/gzread.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/gzread.o
c-blosc/internal-complibs/zlib-1.2.8/gzread.c: In function ‘gz_load’:
c-blosc/internal-complibs/zlib-1.2.8/gzread.c:30:15: warning: implicit declaration of function ‘read’; did you mean ‘fread’? [-Wimplicit-function-declaration]
30 | ret = read(state->fd, buf + *have, len - *have);
| ^~~~
| fread
c-blosc/internal-complibs/zlib-1.2.8/gzread.c: In function ‘gzclose_r’:
c-blosc/internal-complibs/zlib-1.2.8/gzread.c:591:11: warning: implicit declaration of function ‘close’; did you mean ‘pclose’? [-Wimplicit-function-declaration]
591 | ret = close(state->fd);
| ^~~~~
| pclose
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/zlib-1.2.8/gzlib.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/gzlib.o
c-blosc/internal-complibs/zlib-1.2.8/gzlib.c: In function ‘gz_open’:
c-blosc/internal-complibs/zlib-1.2.8/gzlib.c:14:17: warning: implicit declaration of function ‘lseek’; did you mean ‘fseek’? [-Wimplicit-function-declaration]
14 | # define LSEEK lseek
| ^~~~~
c-blosc/internal-complibs/zlib-1.2.8/gzlib.c:256:24: note: in expansion of macro ‘LSEEK’
256 | state->start = LSEEK(state->fd, 0, SEEK_CUR);
| ^~~~~
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/zlib-1.2.8/gzclose.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/gzclose.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/zlib-1.2.8/deflate.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/deflate.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/zlib-1.2.8/crc32.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/crc32.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/zlib-1.2.8/compress.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/compress.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c c-blosc/internal-complibs/zlib-1.2.8/adler32.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/adler32.o
ar rc build/temp.linux-x86_64-3.7/libzlib.a build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/zutil.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/uncompr.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/trees.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/inftrees.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/inflate.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/inffast.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/infback.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/gzwrite.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/gzread.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/gzlib.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/gzclose.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/deflate.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/crc32.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/compress.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zlib-1.2.8/adler32.o
building 'zstd' library
creating build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8
creating build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/legacy
creating build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/dictBuilder
creating build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/deprecated
creating build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/decompress
creating build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress
creating build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v07.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v07.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v06.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v06.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v05.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v05.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v04.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v04.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v03.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v03.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v02.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v02.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v01.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v01.o
c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v01.c: In function ‘ZSTD_decompressSequences’:
c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v01.c:1882:35: warning: ‘dumps’ may be used uninitialized in this function [-Wmaybe-uninitialized]
1882 | seqState.dumpsEnd = dumps + dumpsLength;
| ~~~~~~^~~~~~~~~~~~~
c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v01.c:1893:18: warning: ‘nbSeq’ may be used uninitialized in this function [-Wmaybe-uninitialized]
1893 | nbSeq--;
| ~~~~~^~
c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v01.c:1882:35: warning: ‘dumpsLength’ may be used uninitialized in this function [-Wmaybe-uninitialized]
1882 | seqState.dumpsEnd = dumps + dumpsLength;
| ~~~~~~^~~~~~~~~~~~~
c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v01.c: In function ‘ZSTD_decompressBlock’:
c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v01.c:1545:20: warning: ‘*((void *)&litbp+4)’ may be used uninitialized in this function [-Wmaybe-uninitialized]
1545 | size_t rleSize = litbp.origSize;
| ^~~~~~~
c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v01.c:1529:23: note: ‘*((void *)&litbp+4)’ was declared here
1529 | blockProperties_t litbp;
| ^~~~~
c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v01.c:1536:5: warning: ‘litbp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
1536 | switch(litbp.blockType)
| ^~~~~~
c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v01.c:1529:23: note: ‘litbp’ was declared here
1529 | blockProperties_t litbp;
| ^~~~~
c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v01.c: In function ‘ZSTDv01_decompressDCtx’:
c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v01.c:1966:9: warning: ‘blockProperties’ may be used uninitialized in this function [-Wmaybe-uninitialized]
1966 | switch(blockProperties.blockType)
| ^~~~~~
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/dictBuilder/zdict.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/dictBuilder/zdict.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/dictBuilder/fastcover.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/dictBuilder/fastcover.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/dictBuilder/divsufsort.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/dictBuilder/divsufsort.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/dictBuilder/cover.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/dictBuilder/cover.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/deprecated/zbuff_decompress.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/deprecated/zbuff_decompress.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/deprecated/zbuff_compress.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/deprecated/zbuff_compress.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/deprecated/zbuff_common.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/deprecated/zbuff_common.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/decompress/zstd_decompress_block.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/decompress/zstd_decompress_block.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/decompress/zstd_decompress.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/decompress/zstd_decompress.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/decompress/zstd_ddict.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/decompress/zstd_ddict.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/decompress/huf_decompress.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/decompress/huf_decompress.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/compress/zstdmt_compress.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/zstdmt_compress.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_opt.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_opt.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_ldm.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_ldm.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_lazy.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_lazy.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_fast.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_fast.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_double_fast.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_double_fast.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_compress.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_compress.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/compress/huf_compress.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/huf_compress.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/compress/hist.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/hist.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/compress/fse_compress.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/fse_compress.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/common/zstd_common.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/zstd_common.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/common/xxhash.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/xxhash.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/common/threading.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/threading.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/common/pool.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/pool.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/common/fse_decompress.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/fse_decompress.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/common/error_private.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/error_private.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/common/entropy_common.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/entropy_common.o
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zstd-1.3.8/common -c c-blosc/internal-complibs/zstd-1.3.8/common/debug.c -o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/debug.o
ar rc build/temp.linux-x86_64-3.7/libzstd.a build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v07.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v06.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v05.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v04.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v03.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v02.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/legacy/zstd_v01.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/dictBuilder/zdict.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/dictBuilder/fastcover.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/dictBuilder/divsufsort.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/dictBuilder/cover.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/deprecated/zbuff_decompress.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/deprecated/zbuff_compress.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/deprecated/zbuff_common.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/decompress/zstd_decompress_block.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/decompress/zstd_decompress.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/decompress/zstd_ddict.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/decompress/huf_decompress.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/zstdmt_compress.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_opt.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_ldm.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_lazy.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_fast.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_double_fast.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/zstd_compress.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/huf_compress.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/hist.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/compress/fse_compress.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/zstd_common.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/xxhash.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/threading.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/pool.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/fse_decompress.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/error_private.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/entropy_common.o build/temp.linux-x86_64-3.7/c-blosc/internal-complibs/zstd-1.3.8/common/debug.o
running build_ext
creating build/temp.linux-x86_64-3.7/build
creating build/temp.linux-x86_64-3.7/build/temp.linux-x86_64-3.7
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/a/.conda/envs/devito/include/python3.7m -c build/temp.linux-x86_64-3.7/test_avx2_empty.c -o build/temp.linux-x86_64-3.7/build/temp.linux-x86_64-3.7/test_avx2_empty.o -mavx2
building 'blosc.blosc_extension' extension
creating build/temp.linux-x86_64-3.7/blosc
creating build/temp.linux-x86_64-3.7/c-blosc/blosc
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_LZ4=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/lz4-1.8.3 -Ic-blosc/internal-complibs/lz4-1.8.3 -Ic-blosc/internal-complibs/zstd-1.3.8/common -Ic-blosc/internal-complibs/zstd-1.3.8 -I/home/a/.conda/envs/devito/include/python3.7m -c blosc/blosc_extension.c -o build/temp.linux-x86_64-3.7/blosc/blosc_extension.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
blosc/blosc_extension.c: In function ‘PyBlosc_compressor_list’:
blosc/blosc_extension.c:104:8: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
104 | list = blosc_list_compressors();
| ^
blosc/blosc_extension.c: In function ‘PyBlosc_code_to_name’:
blosc/blosc_extension.c:123:40: warning: passing argument 2 of ‘blosc_compcode_to_compname’ from incompatible pointer type [-Wincompatible-pointer-types]
123 | if (blosc_compcode_to_compname(code, &name) < 0)
| ^~~~~
| |
| char **
In file included from blosc/blosc_extension.c:13:
c-blosc/blosc/blosc.h:389:72: note: expected ‘const char **’ but argument is of type ‘char **’
389 | BLOSC_EXPORT int blosc_compcode_to_compname(int compcode, const char **compname);
| ~~~~~~~~~~~~~^~~~~~~~
blosc/blosc_extension.c: In function ‘PyBlosc_get_clib’:
blosc/blosc_extension.c:345:8: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
345 | clib = blosc_cbuffer_complib(input);
| ^
gcc -pthread -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_LZ4=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.8 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/lz4-1.8.3 -Ic-blosc/internal-complibs/lz4-1.8.3 -Ic-blosc/internal-complibs/zstd-1.3.8/common -Ic-blosc/internal-complibs/zstd-1.3.8 -I/home/a/.conda/envs/devito/include/python3.7m -c c-blosc/blosc/shuffle.c -o build/temp.linux-x86_64-3.7/c-blosc/blosc/shuffle.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
c-blosc/blosc/shuffle.c:177:1: error: conflicting types for ‘_xgetbv’
177 | _xgetbv(uint32_t xcr) {
| ^~~~~~~
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/9.1.0/include/immintrin.h:43,
from c-blosc/blosc/blosc-common.h:71,
from c-blosc/blosc/shuffle.h:18,
from c-blosc/blosc/shuffle.c:10:
/usr/lib/gcc/x86_64-pc-linux-gnu/9.1.0/include/xsaveintrin.h:60:1: note: previous definition of ‘_xgetbv’ was here
60 | _xgetbv (unsigned int __A)
| ^~~~~~~
In file included from c-blosc/blosc/shuffle.c:11:
c-blosc/blosc/shuffle-generic.h:61:13: warning: ‘unshuffle_generic_inline’ defined but not used [-Wunused-function]
61 | static void unshuffle_generic_inline(const size_t type_size,
| ^~~~~~~~~~~~~~~~~~~~~~~~
c-blosc/blosc/shuffle-generic.h:32:13: warning: ‘shuffle_generic_inline’ defined but not used [-Wunused-function]
32 | static void shuffle_generic_inline(const size_t type_size,
| ^~~~~~~~~~~~~~~~~~~~~~
error: command 'gcc' failed with exit status 1
----------------------------------------
ERROR: Command "/home/a/.conda/envs/devito/bin/python -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-install-2669ss_4/blosc/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-mx1r6orc/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-install-2669ss_4/blosc/
CondaEnvException: Pip failed
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