dmachi’s gists

dmachi / sd_downloader.py

Created March 20, 2025 14:35

Bulk Downloader for public net.science/sciduct files

	import os
	import requests
	import json
	import typer
	import concurrent.futures
	import re
	from tqdm import tqdm

	BASE_URL = "https://sciduct.bii.virginia.edu/fs/file/"

dmachi / build.def

Created November 1, 2023 15:09

basic install for bv-brc-cli tools

	Bootstrap: docker
	From: debian:12-slim

	%post
	cd /tmp
	apt-get update
	apt-get install -y curl gdebi locales
	export LANGUAGE=en_US.UTF-8
	export LANG=en_US.UTF-8
	export LC_ALL=en_US.UTF-8

dmachi / service.py

Last active March 17, 2021 04:25

	from sanic import Sanic
	from sanic.response import json,text
	import asyncio

	app = Sanic("service")

	# import concurrent
	# thread_pool = concurrent.futures.ThreadPoolExecutor()

	async def do_step(step,duration,opts={}):

dmachi / gist:9491398

Created March 11, 2014 18:00

	define([
	'intern!object',
	'intern/chai!assert',
	'intern/dojo/request',
	'intern/dojo/node!../data-model',
	'intern/dojo/promise/All'
	], function (registerSuite, assert, request,dataModel,All) {
	var suite = {
	name: "Data Model Tests"
	}

dmachi / gist:5613121

Created May 20, 2013 15:49

select visible nodes in a dgrid

	var dh = domGeom.getMarginBox(grid.contentNode).h;
	var scrollPos = grid.getScrollPosition();
	var rows = Query(".dgrid-row",grid.contentNode).filter(function(node){
	return ((node.offsetTop>=scrollPos.y) && ((node.offsetTop + (.75 * node.offsetHeight)) <(scrollPos.y+dh)));
	});
	grid.clearSelection();
	grid.select(rows[0], rows[rows.length-1]);

dmachi / gist:2934029

Created June 15, 2012 01:13

Custom dGrid in ContentPane that resizes

	define(["dojo/_base/declare", "dgrid/OnDemandGrid", "dgrid/extensions/DijitRegistry","dojo/dom-geometry"],
	function(declare,Grid,DijitRegistryExt,domGeometry) {
	return declare([Grid,DijitRegistryExt], {
	resize: function(){
	if (arguments.length>0){
	domGeometry.setMarginBox(this.domNode, arguments[0]);
	}
	this.inherited("resize", arguments);
	}
	});

dmachi / apt.py

Created June 1, 2012 17:34

Gluster Plugin for StarCluster

	from starcluster.clustersetup import ClusterSetup
	from starcluster.logger import log

	class addRepository(ClusterSetup):
	def __init__(self, repositories=None):
	self.repositories=repositories
	if self.repositories:
	self.repositories= [repo.strip() for repo in repositories.split(',')]

dmachi / gist:1595210

Created January 11, 2012 15:35

tbz2 serializer

	Media({
	mediaType: "application/x-bzip-compressed-tar",
	getQuality: function(object){
	if (object && object.manifest && object.manifest.length>0){
	return 1;
	}
	return 0;
	},
	serialize: function(object, parameters, request){
	//console.log("Serialize object to tbz: ", object, parameters, request);

dmachi / gist:1168317

Created August 24, 2011 15:32

	cid-59fd47:lrs dmachi$ rm -rf downloaded-modules/
	cid-59fd47:lrs dmachi$ node $NODULES
	Downloading http://github.com/kriszyp/commonjs-utils/zipball/v0.2.2
	request url: http://github.com/kriszyp/commonjs-utils/zipball/v0.2.2
	Downloading http://github.com/kriszyp/pintura/zipball/v0.2.6
	request url: http://github.com/kriszyp/pintura/zipball/v0.2.6
	Downloading http://github.com/kriszyp/multi-node/zipball/v0.2.2
	request url: http://github.com/kriszyp/multi-node/zipball/v0.2.2
	Downloading http://github.com/kriszyp/perstore/zipball/v0.2.4
	request url: http://github.com/kriszyp/perstore/zipball/v0.2.4

dmachi / wrapperStore

Created August 18, 2011 15:34

getting started with wrapping two stores with one

	var store = function(substores,options){

	return {
	query: function(query){
	var defs=[];
	var results=[]
	substores.forEach(function(sub,index){
	defs.push(when(sub.query(query), function(resultSet){
	results[index]=resultSet;
	}));

Dustin Machi dmachi