Created
April 26, 2024 14:28
-
-
Save dmbates/1dbddf22124f839fcfb33785174c066c to your computer and use it in GitHub Desktop.
Use of `warning: false` with QuartoNotebookRunner
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
<!DOCTYPE html> | |
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head> | |
<meta charset="utf-8"> | |
<meta name="generator" content="quarto-1.5.31"> | |
<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes"> | |
<title>warning</title> | |
<style> | |
code{white-space: pre-wrap;} | |
span.smallcaps{font-variant: small-caps;} | |
div.columns{display: flex; gap: min(4vw, 1.5em);} | |
div.column{flex: auto; overflow-x: auto;} | |
div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;} | |
ul.task-list{list-style: none;} | |
ul.task-list li input[type="checkbox"] { | |
width: 0.8em; | |
margin: 0 0.8em 0.2em -1em; /* quarto-specific, see https://github.com/quarto-dev/quarto-cli/issues/4556 */ | |
vertical-align: middle; | |
} | |
/* CSS for syntax highlighting */ | |
pre > code.sourceCode { white-space: pre; position: relative; } | |
pre > code.sourceCode > span { line-height: 1.25; } | |
pre > code.sourceCode > span:empty { height: 1.2em; } | |
.sourceCode { overflow: visible; } | |
code.sourceCode > span { color: inherit; text-decoration: inherit; } | |
div.sourceCode { margin: 1em 0; } | |
pre.sourceCode { margin: 0; } | |
@media screen { | |
div.sourceCode { overflow: auto; } | |
} | |
@media print { | |
pre > code.sourceCode { white-space: pre-wrap; } | |
pre > code.sourceCode > span { display: inline-block; text-indent: -5em; padding-left: 5em; } | |
} | |
pre.numberSource code | |
{ counter-reset: source-line 0; } | |
pre.numberSource code > span | |
{ position: relative; left: -4em; counter-increment: source-line; } | |
pre.numberSource code > span > a:first-child::before | |
{ content: counter(source-line); | |
position: relative; left: -1em; text-align: right; vertical-align: baseline; | |
border: none; display: inline-block; | |
-webkit-touch-callout: none; -webkit-user-select: none; | |
-khtml-user-select: none; -moz-user-select: none; | |
-ms-user-select: none; user-select: none; | |
padding: 0 4px; width: 4em; | |
} | |
pre.numberSource { margin-left: 3em; padding-left: 4px; } | |
div.sourceCode | |
{ } | |
@media screen { | |
pre > code.sourceCode > span > a:first-child::before { text-decoration: underline; } | |
} | |
</style> | |
<script src="warning_files/libs/clipboard/clipboard.min.js"></script> | |
<script src="warning_files/libs/quarto-html/quarto.js"></script> | |
<script src="warning_files/libs/quarto-html/popper.min.js"></script> | |
<script src="warning_files/libs/quarto-html/tippy.umd.min.js"></script> | |
<script src="warning_files/libs/quarto-html/anchor.min.js"></script> | |
<link href="warning_files/libs/quarto-html/tippy.css" rel="stylesheet"> | |
<link href="warning_files/libs/quarto-html/quarto-syntax-highlighting.css" rel="stylesheet" id="quarto-text-highlighting-styles"> | |
<script src="warning_files/libs/bootstrap/bootstrap.min.js"></script> | |
<link href="warning_files/libs/bootstrap/bootstrap-icons.css" rel="stylesheet"> | |
<link href="warning_files/libs/bootstrap/bootstrap.min.css" rel="stylesheet" id="quarto-bootstrap" data-mode="light"> | |
</head> | |
<body class="fullcontent"> | |
<div id="quarto-content" class="page-columns page-rows-contents page-layout-article"> | |
<main class="content" id="quarto-document-content"> | |
<p>Define a function that sends a warning</p> | |
<div id="cell-1" class="cell"> | |
<div class="sourceCode cell-code" id="cb1"><pre class="sourceCode julia code-with-copy"><code class="sourceCode julia"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="kw">function</span> <span class="fu">foo</span>(i<span class="op">::</span><span class="dt">Integer</span>)</span> | |
<span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a> <span class="cf">if</span> <span class="fu">iszero</span>(i)</span> | |
<span id="cb1-3"><a href="#cb1-3" aria-hidden="true" tabindex="-1"></a> <span class="cf">return</span> i</span> | |
<span id="cb1-4"><a href="#cb1-4" aria-hidden="true" tabindex="-1"></a> <span class="cf">elseif</span> <span class="fu">isone</span>(i)</span> | |
<span id="cb1-5"><a href="#cb1-5" aria-hidden="true" tabindex="-1"></a> <span class="pp">@warn</span> <span class="st">"i is one"</span></span> | |
<span id="cb1-6"><a href="#cb1-6" aria-hidden="true" tabindex="-1"></a> <span class="cf">return</span> i</span> | |
<span id="cb1-7"><a href="#cb1-7" aria-hidden="true" tabindex="-1"></a> <span class="cf">else</span></span> | |
<span id="cb1-8"><a href="#cb1-8" aria-hidden="true" tabindex="-1"></a> <span class="fu">error</span>(<span class="st">"Received i = </span><span class="sc">$</span>i<span class="st">"</span>)</span> | |
<span id="cb1-9"><a href="#cb1-9" aria-hidden="true" tabindex="-1"></a> <span class="cf">end</span></span> | |
<span id="cb1-10"><a href="#cb1-10" aria-hidden="true" tabindex="-1"></a> <span class="cf">return</span> <span class="fl">0</span></span> | |
<span id="cb1-11"><a href="#cb1-11" aria-hidden="true" tabindex="-1"></a><span class="kw">end</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div> | |
</div> | |
<div id="cell-2" class="cell"> | |
<div class="sourceCode cell-code" id="cb2"><pre class="sourceCode julia code-with-copy"><code class="sourceCode julia"><span id="cb2-1"><a href="#cb2-1" aria-hidden="true" tabindex="-1"></a><span class="fu">foo</span>(<span class="fl">0</span>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div> | |
</div> | |
<div id="cell-3" class="cell"> | |
<div class="sourceCode cell-code" id="cb3"><pre class="sourceCode julia code-with-copy"><code class="sourceCode julia"><span id="cb3-1"><a href="#cb3-1" aria-hidden="true" tabindex="-1"></a><span class="fu">foo</span>(<span class="cn">true</span>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div> | |
</div> | |
</main> | |
<!-- /main column --> | |
<script id="quarto-html-after-body" type="application/javascript"> | |
window.document.addEventListener("DOMContentLoaded", function (event) { | |
const toggleBodyColorMode = (bsSheetEl) => { | |
const mode = bsSheetEl.getAttribute("data-mode"); | |
const bodyEl = window.document.querySelector("body"); | |
if (mode === "dark") { | |
bodyEl.classList.add("quarto-dark"); | |
bodyEl.classList.remove("quarto-light"); | |
} else { | |
bodyEl.classList.add("quarto-light"); | |
bodyEl.classList.remove("quarto-dark"); | |
} | |
} | |
const toggleBodyColorPrimary = () => { | |
const bsSheetEl = window.document.querySelector("link#quarto-bootstrap"); | |
if (bsSheetEl) { | |
toggleBodyColorMode(bsSheetEl); | |
} | |
} | |
toggleBodyColorPrimary(); | |
const icon = ""; | |
const anchorJS = new window.AnchorJS(); | |
anchorJS.options = { | |
placement: 'right', | |
icon: icon | |
}; | |
anchorJS.add('.anchored'); | |
const isCodeAnnotation = (el) => { | |
for (const clz of el.classList) { | |
if (clz.startsWith('code-annotation-')) { | |
return true; | |
} | |
} | |
return false; | |
} | |
const onCopySuccess = function(e) { | |
// button target | |
const button = e.trigger; | |
// don't keep focus | |
button.blur(); | |
// flash "checked" | |
button.classList.add('code-copy-button-checked'); | |
var currentTitle = button.getAttribute("title"); | |
button.setAttribute("title", "Copied!"); | |
let tooltip; | |
if (window.bootstrap) { | |
button.setAttribute("data-bs-toggle", "tooltip"); | |
button.setAttribute("data-bs-placement", "left"); | |
button.setAttribute("data-bs-title", "Copied!"); | |
tooltip = new bootstrap.Tooltip(button, | |
{ trigger: "manual", | |
customClass: "code-copy-button-tooltip", | |
offset: [0, -8]}); | |
tooltip.show(); | |
} | |
setTimeout(function() { | |
if (tooltip) { | |
tooltip.hide(); | |
button.removeAttribute("data-bs-title"); | |
button.removeAttribute("data-bs-toggle"); | |
button.removeAttribute("data-bs-placement"); | |
} | |
button.setAttribute("title", currentTitle); | |
button.classList.remove('code-copy-button-checked'); | |
}, 1000); | |
// clear code selection | |
e.clearSelection(); | |
} | |
const getTextToCopy = function(trigger) { | |
const codeEl = trigger.previousElementSibling.cloneNode(true); | |
for (const childEl of codeEl.children) { | |
if (isCodeAnnotation(childEl)) { | |
childEl.remove(); | |
} | |
} | |
return codeEl.innerText; | |
} | |
const clipboard = new window.ClipboardJS('.code-copy-button:not([data-in-quarto-modal])', { | |
text: getTextToCopy | |
}); | |
clipboard.on('success', onCopySuccess); | |
if (window.document.getElementById('quarto-embedded-source-code-modal')) { | |
// For code content inside modals, clipBoardJS needs to be initialized with a container option | |
// TODO: Check when it could be a function (https://github.com/zenorocha/clipboard.js/issues/860) | |
const clipboardModal = new window.ClipboardJS('.code-copy-button[data-in-quarto-modal]', { | |
text: getTextToCopy, | |
container: window.document.getElementById('quarto-embedded-source-code-modal') | |
}); | |
clipboardModal.on('success', onCopySuccess); | |
} | |
var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//); | |
var mailtoRegex = new RegExp(/^mailto:/); | |
var filterRegex = new RegExp('/' + window.location.host + '/'); | |
var isInternal = (href) => { | |
return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href); | |
} | |
// Inspect non-navigation links and adorn them if external | |
var links = window.document.querySelectorAll('a[href]:not(.nav-link):not(.navbar-brand):not(.toc-action):not(.sidebar-link):not(.sidebar-item-toggle):not(.pagination-link):not(.no-external):not([aria-hidden]):not(.dropdown-item):not(.quarto-navigation-tool):not(.about-link)'); | |
for (var i=0; i<links.length; i++) { | |
const link = links[i]; | |
if (!isInternal(link.href)) { | |
// undo the damage that might have been done by quarto-nav.js in the case of | |
// links that we want to consider external | |
if (link.dataset.originalHref !== undefined) { | |
link.href = link.dataset.originalHref; | |
} | |
} | |
} | |
function tippyHover(el, contentFn, onTriggerFn, onUntriggerFn) { | |
const config = { | |
allowHTML: true, | |
maxWidth: 500, | |
delay: 100, | |
arrow: false, | |
appendTo: function(el) { | |
return el.parentElement; | |
}, | |
interactive: true, | |
interactiveBorder: 10, | |
theme: 'quarto', | |
placement: 'bottom-start', | |
}; | |
if (contentFn) { | |
config.content = contentFn; | |
} | |
if (onTriggerFn) { | |
config.onTrigger = onTriggerFn; | |
} | |
if (onUntriggerFn) { | |
config.onUntrigger = onUntriggerFn; | |
} | |
window.tippy(el, config); | |
} | |
const noterefs = window.document.querySelectorAll('a[role="doc-noteref"]'); | |
for (var i=0; i<noterefs.length; i++) { | |
const ref = noterefs[i]; | |
tippyHover(ref, function() { | |
// use id or data attribute instead here | |
let href = ref.getAttribute('data-footnote-href') || ref.getAttribute('href'); | |
try { href = new URL(href).hash; } catch {} | |
const id = href.replace(/^#\/?/, ""); | |
const note = window.document.getElementById(id); | |
if (note) { | |
return note.innerHTML; | |
} else { | |
return ""; | |
} | |
}); | |
} | |
const xrefs = window.document.querySelectorAll('a.quarto-xref'); | |
const processXRef = (id, note) => { | |
// Strip column container classes | |
const stripColumnClz = (el) => { | |
el.classList.remove("page-full", "page-columns"); | |
if (el.children) { | |
for (const child of el.children) { | |
stripColumnClz(child); | |
} | |
} | |
} | |
stripColumnClz(note) | |
if (id === null || id.startsWith('sec-')) { | |
// Special case sections, only their first couple elements | |
const container = document.createElement("div"); | |
if (note.children && note.children.length > 2) { | |
container.appendChild(note.children[0].cloneNode(true)); | |
for (let i = 1; i < note.children.length; i++) { | |
const child = note.children[i]; | |
if (child.tagName === "P" && child.innerText === "") { | |
continue; | |
} else { | |
container.appendChild(child.cloneNode(true)); | |
break; | |
} | |
} | |
if (window.Quarto?.typesetMath) { | |
window.Quarto.typesetMath(container); | |
} | |
return container.innerHTML | |
} else { | |
if (window.Quarto?.typesetMath) { | |
window.Quarto.typesetMath(note); | |
} | |
return note.innerHTML; | |
} | |
} else { | |
// Remove any anchor links if they are present | |
const anchorLink = note.querySelector('a.anchorjs-link'); | |
if (anchorLink) { | |
anchorLink.remove(); | |
} | |
if (window.Quarto?.typesetMath) { | |
window.Quarto.typesetMath(note); | |
} | |
// TODO in 1.5, we should make sure this works without a callout special case | |
if (note.classList.contains("callout")) { | |
return note.outerHTML; | |
} else { | |
return note.innerHTML; | |
} | |
} | |
} | |
for (var i=0; i<xrefs.length; i++) { | |
const xref = xrefs[i]; | |
tippyHover(xref, undefined, function(instance) { | |
instance.disable(); | |
let url = xref.getAttribute('href'); | |
let hash = undefined; | |
if (url.startsWith('#')) { | |
hash = url; | |
} else { | |
try { hash = new URL(url).hash; } catch {} | |
} | |
if (hash) { | |
const id = hash.replace(/^#\/?/, ""); | |
const note = window.document.getElementById(id); | |
if (note !== null) { | |
try { | |
const html = processXRef(id, note.cloneNode(true)); | |
instance.setContent(html); | |
} finally { | |
instance.enable(); | |
instance.show(); | |
} | |
} else { | |
// See if we can fetch this | |
fetch(url.split('#')[0]) | |
.then(res => res.text()) | |
.then(html => { | |
const parser = new DOMParser(); | |
const htmlDoc = parser.parseFromString(html, "text/html"); | |
const note = htmlDoc.getElementById(id); | |
if (note !== null) { | |
const html = processXRef(id, note); | |
instance.setContent(html); | |
} | |
}).finally(() => { | |
instance.enable(); | |
instance.show(); | |
}); | |
} | |
} else { | |
// See if we can fetch a full url (with no hash to target) | |
// This is a special case and we should probably do some content thinning / targeting | |
fetch(url) | |
.then(res => res.text()) | |
.then(html => { | |
const parser = new DOMParser(); | |
const htmlDoc = parser.parseFromString(html, "text/html"); | |
const note = htmlDoc.querySelector('main.content'); | |
if (note !== null) { | |
// This should only happen for chapter cross references | |
// (since there is no id in the URL) | |
// remove the first header | |
if (note.children.length > 0 && note.children[0].tagName === "HEADER") { | |
note.children[0].remove(); | |
} | |
const html = processXRef(null, note); | |
instance.setContent(html); | |
} | |
}).finally(() => { | |
instance.enable(); | |
instance.show(); | |
}); | |
} | |
}, function(instance) { | |
}); | |
} | |
let selectedAnnoteEl; | |
const selectorForAnnotation = ( cell, annotation) => { | |
let cellAttr = 'data-code-cell="' + cell + '"'; | |
let lineAttr = 'data-code-annotation="' + annotation + '"'; | |
const selector = 'span[' + cellAttr + '][' + lineAttr + ']'; | |
return selector; | |
} | |
const selectCodeLines = (annoteEl) => { | |
const doc = window.document; | |
const targetCell = annoteEl.getAttribute("data-target-cell"); | |
const targetAnnotation = annoteEl.getAttribute("data-target-annotation"); | |
const annoteSpan = window.document.querySelector(selectorForAnnotation(targetCell, targetAnnotation)); | |
const lines = annoteSpan.getAttribute("data-code-lines").split(","); | |
const lineIds = lines.map((line) => { | |
return targetCell + "-" + line; | |
}) | |
let top = null; | |
let height = null; | |
let parent = null; | |
if (lineIds.length > 0) { | |
//compute the position of the single el (top and bottom and make a div) | |
const el = window.document.getElementById(lineIds[0]); | |
top = el.offsetTop; | |
height = el.offsetHeight; | |
parent = el.parentElement.parentElement; | |
if (lineIds.length > 1) { | |
const lastEl = window.document.getElementById(lineIds[lineIds.length - 1]); | |
const bottom = lastEl.offsetTop + lastEl.offsetHeight; | |
height = bottom - top; | |
} | |
if (top !== null && height !== null && parent !== null) { | |
// cook up a div (if necessary) and position it | |
let div = window.document.getElementById("code-annotation-line-highlight"); | |
if (div === null) { | |
div = window.document.createElement("div"); | |
div.setAttribute("id", "code-annotation-line-highlight"); | |
div.style.position = 'absolute'; | |
parent.appendChild(div); | |
} | |
div.style.top = top - 2 + "px"; | |
div.style.height = height + 4 + "px"; | |
div.style.left = 0; | |
let gutterDiv = window.document.getElementById("code-annotation-line-highlight-gutter"); | |
if (gutterDiv === null) { | |
gutterDiv = window.document.createElement("div"); | |
gutterDiv.setAttribute("id", "code-annotation-line-highlight-gutter"); | |
gutterDiv.style.position = 'absolute'; | |
const codeCell = window.document.getElementById(targetCell); | |
const gutter = codeCell.querySelector('.code-annotation-gutter'); | |
gutter.appendChild(gutterDiv); | |
} | |
gutterDiv.style.top = top - 2 + "px"; | |
gutterDiv.style.height = height + 4 + "px"; | |
} | |
selectedAnnoteEl = annoteEl; | |
} | |
}; | |
const unselectCodeLines = () => { | |
const elementsIds = ["code-annotation-line-highlight", "code-annotation-line-highlight-gutter"]; | |
elementsIds.forEach((elId) => { | |
const div = window.document.getElementById(elId); | |
if (div) { | |
div.remove(); | |
} | |
}); | |
selectedAnnoteEl = undefined; | |
}; | |
// Handle positioning of the toggle | |
window.addEventListener( | |
"resize", | |
throttle(() => { | |
elRect = undefined; | |
if (selectedAnnoteEl) { | |
selectCodeLines(selectedAnnoteEl); | |
} | |
}, 10) | |
); | |
function throttle(fn, ms) { | |
let throttle = false; | |
let timer; | |
return (...args) => { | |
if(!throttle) { // first call gets through | |
fn.apply(this, args); | |
throttle = true; | |
} else { // all the others get throttled | |
if(timer) clearTimeout(timer); // cancel #2 | |
timer = setTimeout(() => { | |
fn.apply(this, args); | |
timer = throttle = false; | |
}, ms); | |
} | |
}; | |
} | |
// Attach click handler to the DT | |
const annoteDls = window.document.querySelectorAll('dt[data-target-cell]'); | |
for (const annoteDlNode of annoteDls) { | |
annoteDlNode.addEventListener('click', (event) => { | |
const clickedEl = event.target; | |
if (clickedEl !== selectedAnnoteEl) { | |
unselectCodeLines(); | |
const activeEl = window.document.querySelector('dt[data-target-cell].code-annotation-active'); | |
if (activeEl) { | |
activeEl.classList.remove('code-annotation-active'); | |
} | |
selectCodeLines(clickedEl); | |
clickedEl.classList.add('code-annotation-active'); | |
} else { | |
// Unselect the line | |
unselectCodeLines(); | |
clickedEl.classList.remove('code-annotation-active'); | |
} | |
}); | |
} | |
const findCites = (el) => { | |
const parentEl = el.parentElement; | |
if (parentEl) { | |
const cites = parentEl.dataset.cites; | |
if (cites) { | |
return { | |
el, | |
cites: cites.split(' ') | |
}; | |
} else { | |
return findCites(el.parentElement) | |
} | |
} else { | |
return undefined; | |
} | |
}; | |
var bibliorefs = window.document.querySelectorAll('a[role="doc-biblioref"]'); | |
for (var i=0; i<bibliorefs.length; i++) { | |
const ref = bibliorefs[i]; | |
const citeInfo = findCites(ref); | |
if (citeInfo) { | |
tippyHover(citeInfo.el, function() { | |
var popup = window.document.createElement('div'); | |
citeInfo.cites.forEach(function(cite) { | |
var citeDiv = window.document.createElement('div'); | |
citeDiv.classList.add('hanging-indent'); | |
citeDiv.classList.add('csl-entry'); | |
var biblioDiv = window.document.getElementById('ref-' + cite); | |
if (biblioDiv) { | |
citeDiv.innerHTML = biblioDiv.innerHTML; | |
} | |
popup.appendChild(citeDiv); | |
}); | |
return popup.innerHTML; | |
}); | |
} | |
} | |
}); | |
</script> | |
</div> <!-- /content --> | |
</body></html> |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
--- | |
jupyter: julia-1.10 | |
--- | |
Define a function that sends a warning | |
```{julia} | |
function foo(i::Integer) | |
if iszero(i) | |
return i | |
elseif isone(i) | |
@warn "i is one" | |
return i | |
else | |
error("Received i = $i") | |
end | |
return 0 | |
end | |
``` | |
```{julia} | |
#| warning: false | |
foo(0) | |
``` | |
```{julia} | |
#| warning: false | |
foo(true) | |
``` |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
<!DOCTYPE html> | |
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head> | |
<meta charset="utf-8"> | |
<meta name="generator" content="quarto-1.5.31"> | |
<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes"> | |
<title>warning</title> | |
<style> | |
code{white-space: pre-wrap;} | |
span.smallcaps{font-variant: small-caps;} | |
div.columns{display: flex; gap: min(4vw, 1.5em);} | |
div.column{flex: auto; overflow-x: auto;} | |
div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;} | |
ul.task-list{list-style: none;} | |
ul.task-list li input[type="checkbox"] { | |
width: 0.8em; | |
margin: 0 0.8em 0.2em -1em; /* quarto-specific, see https://github.com/quarto-dev/quarto-cli/issues/4556 */ | |
vertical-align: middle; | |
} | |
/* CSS for syntax highlighting */ | |
pre > code.sourceCode { white-space: pre; position: relative; } | |
pre > code.sourceCode > span { line-height: 1.25; } | |
pre > code.sourceCode > span:empty { height: 1.2em; } | |
.sourceCode { overflow: visible; } | |
code.sourceCode > span { color: inherit; text-decoration: inherit; } | |
div.sourceCode { margin: 1em 0; } | |
pre.sourceCode { margin: 0; } | |
@media screen { | |
div.sourceCode { overflow: auto; } | |
} | |
@media print { | |
pre > code.sourceCode { white-space: pre-wrap; } | |
pre > code.sourceCode > span { display: inline-block; text-indent: -5em; padding-left: 5em; } | |
} | |
pre.numberSource code | |
{ counter-reset: source-line 0; } | |
pre.numberSource code > span | |
{ position: relative; left: -4em; counter-increment: source-line; } | |
pre.numberSource code > span > a:first-child::before | |
{ content: counter(source-line); | |
position: relative; left: -1em; text-align: right; vertical-align: baseline; | |
border: none; display: inline-block; | |
-webkit-touch-callout: none; -webkit-user-select: none; | |
-khtml-user-select: none; -moz-user-select: none; | |
-ms-user-select: none; user-select: none; | |
padding: 0 4px; width: 4em; | |
} | |
pre.numberSource { margin-left: 3em; padding-left: 4px; } | |
div.sourceCode | |
{ } | |
@media screen { | |
pre > code.sourceCode > span > a:first-child::before { text-decoration: underline; } | |
} | |
</style> | |
<script src="warning_files/libs/clipboard/clipboard.min.js"></script> | |
<script src="warning_files/libs/quarto-html/quarto.js"></script> | |
<script src="warning_files/libs/quarto-html/popper.min.js"></script> | |
<script src="warning_files/libs/quarto-html/tippy.umd.min.js"></script> | |
<script src="warning_files/libs/quarto-html/anchor.min.js"></script> | |
<link href="warning_files/libs/quarto-html/tippy.css" rel="stylesheet"> | |
<link href="warning_files/libs/quarto-html/quarto-syntax-highlighting.css" rel="stylesheet" id="quarto-text-highlighting-styles"> | |
<script src="warning_files/libs/bootstrap/bootstrap.min.js"></script> | |
<link href="warning_files/libs/bootstrap/bootstrap-icons.css" rel="stylesheet"> | |
<link href="warning_files/libs/bootstrap/bootstrap.min.css" rel="stylesheet" id="quarto-bootstrap" data-mode="light"> | |
</head> | |
<body class="fullcontent"> | |
<div id="quarto-content" class="page-columns page-rows-contents page-layout-article"> | |
<main class="content" id="quarto-document-content"> | |
<p>Define a function that sends a warning</p> | |
<div id="2" class="cell" data-execution_count="1"> | |
<div class="sourceCode cell-code" id="cb1"><pre class="sourceCode julia code-with-copy"><code class="sourceCode julia"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="kw">function</span> <span class="fu">foo</span>(i<span class="op">::</span><span class="dt">Integer</span>)</span> | |
<span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a> <span class="cf">if</span> <span class="fu">iszero</span>(i)</span> | |
<span id="cb1-3"><a href="#cb1-3" aria-hidden="true" tabindex="-1"></a> <span class="cf">return</span> i</span> | |
<span id="cb1-4"><a href="#cb1-4" aria-hidden="true" tabindex="-1"></a> <span class="cf">elseif</span> <span class="fu">isone</span>(i)</span> | |
<span id="cb1-5"><a href="#cb1-5" aria-hidden="true" tabindex="-1"></a> <span class="pp">@warn</span> <span class="st">"i is one"</span></span> | |
<span id="cb1-6"><a href="#cb1-6" aria-hidden="true" tabindex="-1"></a> <span class="cf">return</span> i</span> | |
<span id="cb1-7"><a href="#cb1-7" aria-hidden="true" tabindex="-1"></a> <span class="cf">else</span></span> | |
<span id="cb1-8"><a href="#cb1-8" aria-hidden="true" tabindex="-1"></a> <span class="fu">error</span>(<span class="st">"Received i = </span><span class="sc">$</span>i<span class="st">"</span>)</span> | |
<span id="cb1-9"><a href="#cb1-9" aria-hidden="true" tabindex="-1"></a> <span class="cf">end</span></span> | |
<span id="cb1-10"><a href="#cb1-10" aria-hidden="true" tabindex="-1"></a> <span class="cf">return</span> <span class="fl">0</span></span> | |
<span id="cb1-11"><a href="#cb1-11" aria-hidden="true" tabindex="-1"></a><span class="kw">end</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div> | |
<div class="cell-output cell-output-display" data-execution_count="1"> | |
<pre><code>foo (generic function with 1 method)</code></pre> | |
</div> | |
</div> | |
<div id="4" class="cell" data-execution_count="1"> | |
<div class="sourceCode cell-code" id="cb3"><pre class="sourceCode julia code-with-copy"><code class="sourceCode julia"><span id="cb3-1"><a href="#cb3-1" aria-hidden="true" tabindex="-1"></a><span class="fu">foo</span>(<span class="fl">0</span>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div> | |
<div class="cell-output cell-output-display" data-execution_count="1"> | |
<pre><code>0</code></pre> | |
</div> | |
</div> | |
<div id="6" class="cell" data-execution_count="1"> | |
<div class="sourceCode cell-code" id="cb5"><pre class="sourceCode julia code-with-copy"><code class="sourceCode julia"><span id="cb5-1"><a href="#cb5-1" aria-hidden="true" tabindex="-1"></a><span class="fu">foo</span>(<span class="cn">true</span>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div> | |
<div class="cell-output cell-output-stdout"> | |
<pre><code>┌ Warning: i is one | |
└ @ Main.Notebook ~/git/scMixedModels/notebooks/warning/warning.qmd:12</code></pre> | |
</div> | |
<div class="cell-output cell-output-display" data-execution_count="1"> | |
<pre><code>true</code></pre> | |
</div> | |
</div> | |
</main> | |
<!-- /main column --> | |
<script id="quarto-html-after-body" type="application/javascript"> | |
window.document.addEventListener("DOMContentLoaded", function (event) { | |
const toggleBodyColorMode = (bsSheetEl) => { | |
const mode = bsSheetEl.getAttribute("data-mode"); | |
const bodyEl = window.document.querySelector("body"); | |
if (mode === "dark") { | |
bodyEl.classList.add("quarto-dark"); | |
bodyEl.classList.remove("quarto-light"); | |
} else { | |
bodyEl.classList.add("quarto-light"); | |
bodyEl.classList.remove("quarto-dark"); | |
} | |
} | |
const toggleBodyColorPrimary = () => { | |
const bsSheetEl = window.document.querySelector("link#quarto-bootstrap"); | |
if (bsSheetEl) { | |
toggleBodyColorMode(bsSheetEl); | |
} | |
} | |
toggleBodyColorPrimary(); | |
const icon = ""; | |
const anchorJS = new window.AnchorJS(); | |
anchorJS.options = { | |
placement: 'right', | |
icon: icon | |
}; | |
anchorJS.add('.anchored'); | |
const isCodeAnnotation = (el) => { | |
for (const clz of el.classList) { | |
if (clz.startsWith('code-annotation-')) { | |
return true; | |
} | |
} | |
return false; | |
} | |
const onCopySuccess = function(e) { | |
// button target | |
const button = e.trigger; | |
// don't keep focus | |
button.blur(); | |
// flash "checked" | |
button.classList.add('code-copy-button-checked'); | |
var currentTitle = button.getAttribute("title"); | |
button.setAttribute("title", "Copied!"); | |
let tooltip; | |
if (window.bootstrap) { | |
button.setAttribute("data-bs-toggle", "tooltip"); | |
button.setAttribute("data-bs-placement", "left"); | |
button.setAttribute("data-bs-title", "Copied!"); | |
tooltip = new bootstrap.Tooltip(button, | |
{ trigger: "manual", | |
customClass: "code-copy-button-tooltip", | |
offset: [0, -8]}); | |
tooltip.show(); | |
} | |
setTimeout(function() { | |
if (tooltip) { | |
tooltip.hide(); | |
button.removeAttribute("data-bs-title"); | |
button.removeAttribute("data-bs-toggle"); | |
button.removeAttribute("data-bs-placement"); | |
} | |
button.setAttribute("title", currentTitle); | |
button.classList.remove('code-copy-button-checked'); | |
}, 1000); | |
// clear code selection | |
e.clearSelection(); | |
} | |
const getTextToCopy = function(trigger) { | |
const codeEl = trigger.previousElementSibling.cloneNode(true); | |
for (const childEl of codeEl.children) { | |
if (isCodeAnnotation(childEl)) { | |
childEl.remove(); | |
} | |
} | |
return codeEl.innerText; | |
} | |
const clipboard = new window.ClipboardJS('.code-copy-button:not([data-in-quarto-modal])', { | |
text: getTextToCopy | |
}); | |
clipboard.on('success', onCopySuccess); | |
if (window.document.getElementById('quarto-embedded-source-code-modal')) { | |
// For code content inside modals, clipBoardJS needs to be initialized with a container option | |
// TODO: Check when it could be a function (https://github.com/zenorocha/clipboard.js/issues/860) | |
const clipboardModal = new window.ClipboardJS('.code-copy-button[data-in-quarto-modal]', { | |
text: getTextToCopy, | |
container: window.document.getElementById('quarto-embedded-source-code-modal') | |
}); | |
clipboardModal.on('success', onCopySuccess); | |
} | |
var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//); | |
var mailtoRegex = new RegExp(/^mailto:/); | |
var filterRegex = new RegExp('/' + window.location.host + '/'); | |
var isInternal = (href) => { | |
return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href); | |
} | |
// Inspect non-navigation links and adorn them if external | |
var links = window.document.querySelectorAll('a[href]:not(.nav-link):not(.navbar-brand):not(.toc-action):not(.sidebar-link):not(.sidebar-item-toggle):not(.pagination-link):not(.no-external):not([aria-hidden]):not(.dropdown-item):not(.quarto-navigation-tool):not(.about-link)'); | |
for (var i=0; i<links.length; i++) { | |
const link = links[i]; | |
if (!isInternal(link.href)) { | |
// undo the damage that might have been done by quarto-nav.js in the case of | |
// links that we want to consider external | |
if (link.dataset.originalHref !== undefined) { | |
link.href = link.dataset.originalHref; | |
} | |
} | |
} | |
function tippyHover(el, contentFn, onTriggerFn, onUntriggerFn) { | |
const config = { | |
allowHTML: true, | |
maxWidth: 500, | |
delay: 100, | |
arrow: false, | |
appendTo: function(el) { | |
return el.parentElement; | |
}, | |
interactive: true, | |
interactiveBorder: 10, | |
theme: 'quarto', | |
placement: 'bottom-start', | |
}; | |
if (contentFn) { | |
config.content = contentFn; | |
} | |
if (onTriggerFn) { | |
config.onTrigger = onTriggerFn; | |
} | |
if (onUntriggerFn) { | |
config.onUntrigger = onUntriggerFn; | |
} | |
window.tippy(el, config); | |
} | |
const noterefs = window.document.querySelectorAll('a[role="doc-noteref"]'); | |
for (var i=0; i<noterefs.length; i++) { | |
const ref = noterefs[i]; | |
tippyHover(ref, function() { | |
// use id or data attribute instead here | |
let href = ref.getAttribute('data-footnote-href') || ref.getAttribute('href'); | |
try { href = new URL(href).hash; } catch {} | |
const id = href.replace(/^#\/?/, ""); | |
const note = window.document.getElementById(id); | |
if (note) { | |
return note.innerHTML; | |
} else { | |
return ""; | |
} | |
}); | |
} | |
const xrefs = window.document.querySelectorAll('a.quarto-xref'); | |
const processXRef = (id, note) => { | |
// Strip column container classes | |
const stripColumnClz = (el) => { | |
el.classList.remove("page-full", "page-columns"); | |
if (el.children) { | |
for (const child of el.children) { | |
stripColumnClz(child); | |
} | |
} | |
} | |
stripColumnClz(note) | |
if (id === null || id.startsWith('sec-')) { | |
// Special case sections, only their first couple elements | |
const container = document.createElement("div"); | |
if (note.children && note.children.length > 2) { | |
container.appendChild(note.children[0].cloneNode(true)); | |
for (let i = 1; i < note.children.length; i++) { | |
const child = note.children[i]; | |
if (child.tagName === "P" && child.innerText === "") { | |
continue; | |
} else { | |
container.appendChild(child.cloneNode(true)); | |
break; | |
} | |
} | |
if (window.Quarto?.typesetMath) { | |
window.Quarto.typesetMath(container); | |
} | |
return container.innerHTML | |
} else { | |
if (window.Quarto?.typesetMath) { | |
window.Quarto.typesetMath(note); | |
} | |
return note.innerHTML; | |
} | |
} else { | |
// Remove any anchor links if they are present | |
const anchorLink = note.querySelector('a.anchorjs-link'); | |
if (anchorLink) { | |
anchorLink.remove(); | |
} | |
if (window.Quarto?.typesetMath) { | |
window.Quarto.typesetMath(note); | |
} | |
// TODO in 1.5, we should make sure this works without a callout special case | |
if (note.classList.contains("callout")) { | |
return note.outerHTML; | |
} else { | |
return note.innerHTML; | |
} | |
} | |
} | |
for (var i=0; i<xrefs.length; i++) { | |
const xref = xrefs[i]; | |
tippyHover(xref, undefined, function(instance) { | |
instance.disable(); | |
let url = xref.getAttribute('href'); | |
let hash = undefined; | |
if (url.startsWith('#')) { | |
hash = url; | |
} else { | |
try { hash = new URL(url).hash; } catch {} | |
} | |
if (hash) { | |
const id = hash.replace(/^#\/?/, ""); | |
const note = window.document.getElementById(id); | |
if (note !== null) { | |
try { | |
const html = processXRef(id, note.cloneNode(true)); | |
instance.setContent(html); | |
} finally { | |
instance.enable(); | |
instance.show(); | |
} | |
} else { | |
// See if we can fetch this | |
fetch(url.split('#')[0]) | |
.then(res => res.text()) | |
.then(html => { | |
const parser = new DOMParser(); | |
const htmlDoc = parser.parseFromString(html, "text/html"); | |
const note = htmlDoc.getElementById(id); | |
if (note !== null) { | |
const html = processXRef(id, note); | |
instance.setContent(html); | |
} | |
}).finally(() => { | |
instance.enable(); | |
instance.show(); | |
}); | |
} | |
} else { | |
// See if we can fetch a full url (with no hash to target) | |
// This is a special case and we should probably do some content thinning / targeting | |
fetch(url) | |
.then(res => res.text()) | |
.then(html => { | |
const parser = new DOMParser(); | |
const htmlDoc = parser.parseFromString(html, "text/html"); | |
const note = htmlDoc.querySelector('main.content'); | |
if (note !== null) { | |
// This should only happen for chapter cross references | |
// (since there is no id in the URL) | |
// remove the first header | |
if (note.children.length > 0 && note.children[0].tagName === "HEADER") { | |
note.children[0].remove(); | |
} | |
const html = processXRef(null, note); | |
instance.setContent(html); | |
} | |
}).finally(() => { | |
instance.enable(); | |
instance.show(); | |
}); | |
} | |
}, function(instance) { | |
}); | |
} | |
let selectedAnnoteEl; | |
const selectorForAnnotation = ( cell, annotation) => { | |
let cellAttr = 'data-code-cell="' + cell + '"'; | |
let lineAttr = 'data-code-annotation="' + annotation + '"'; | |
const selector = 'span[' + cellAttr + '][' + lineAttr + ']'; | |
return selector; | |
} | |
const selectCodeLines = (annoteEl) => { | |
const doc = window.document; | |
const targetCell = annoteEl.getAttribute("data-target-cell"); | |
const targetAnnotation = annoteEl.getAttribute("data-target-annotation"); | |
const annoteSpan = window.document.querySelector(selectorForAnnotation(targetCell, targetAnnotation)); | |
const lines = annoteSpan.getAttribute("data-code-lines").split(","); | |
const lineIds = lines.map((line) => { | |
return targetCell + "-" + line; | |
}) | |
let top = null; | |
let height = null; | |
let parent = null; | |
if (lineIds.length > 0) { | |
//compute the position of the single el (top and bottom and make a div) | |
const el = window.document.getElementById(lineIds[0]); | |
top = el.offsetTop; | |
height = el.offsetHeight; | |
parent = el.parentElement.parentElement; | |
if (lineIds.length > 1) { | |
const lastEl = window.document.getElementById(lineIds[lineIds.length - 1]); | |
const bottom = lastEl.offsetTop + lastEl.offsetHeight; | |
height = bottom - top; | |
} | |
if (top !== null && height !== null && parent !== null) { | |
// cook up a div (if necessary) and position it | |
let div = window.document.getElementById("code-annotation-line-highlight"); | |
if (div === null) { | |
div = window.document.createElement("div"); | |
div.setAttribute("id", "code-annotation-line-highlight"); | |
div.style.position = 'absolute'; | |
parent.appendChild(div); | |
} | |
div.style.top = top - 2 + "px"; | |
div.style.height = height + 4 + "px"; | |
div.style.left = 0; | |
let gutterDiv = window.document.getElementById("code-annotation-line-highlight-gutter"); | |
if (gutterDiv === null) { | |
gutterDiv = window.document.createElement("div"); | |
gutterDiv.setAttribute("id", "code-annotation-line-highlight-gutter"); | |
gutterDiv.style.position = 'absolute'; | |
const codeCell = window.document.getElementById(targetCell); | |
const gutter = codeCell.querySelector('.code-annotation-gutter'); | |
gutter.appendChild(gutterDiv); | |
} | |
gutterDiv.style.top = top - 2 + "px"; | |
gutterDiv.style.height = height + 4 + "px"; | |
} | |
selectedAnnoteEl = annoteEl; | |
} | |
}; | |
const unselectCodeLines = () => { | |
const elementsIds = ["code-annotation-line-highlight", "code-annotation-line-highlight-gutter"]; | |
elementsIds.forEach((elId) => { | |
const div = window.document.getElementById(elId); | |
if (div) { | |
div.remove(); | |
} | |
}); | |
selectedAnnoteEl = undefined; | |
}; | |
// Handle positioning of the toggle | |
window.addEventListener( | |
"resize", | |
throttle(() => { | |
elRect = undefined; | |
if (selectedAnnoteEl) { | |
selectCodeLines(selectedAnnoteEl); | |
} | |
}, 10) | |
); | |
function throttle(fn, ms) { | |
let throttle = false; | |
let timer; | |
return (...args) => { | |
if(!throttle) { // first call gets through | |
fn.apply(this, args); | |
throttle = true; | |
} else { // all the others get throttled | |
if(timer) clearTimeout(timer); // cancel #2 | |
timer = setTimeout(() => { | |
fn.apply(this, args); | |
timer = throttle = false; | |
}, ms); | |
} | |
}; | |
} | |
// Attach click handler to the DT | |
const annoteDls = window.document.querySelectorAll('dt[data-target-cell]'); | |
for (const annoteDlNode of annoteDls) { | |
annoteDlNode.addEventListener('click', (event) => { | |
const clickedEl = event.target; | |
if (clickedEl !== selectedAnnoteEl) { | |
unselectCodeLines(); | |
const activeEl = window.document.querySelector('dt[data-target-cell].code-annotation-active'); | |
if (activeEl) { | |
activeEl.classList.remove('code-annotation-active'); | |
} | |
selectCodeLines(clickedEl); | |
clickedEl.classList.add('code-annotation-active'); | |
} else { | |
// Unselect the line | |
unselectCodeLines(); | |
clickedEl.classList.remove('code-annotation-active'); | |
} | |
}); | |
} | |
const findCites = (el) => { | |
const parentEl = el.parentElement; | |
if (parentEl) { | |
const cites = parentEl.dataset.cites; | |
if (cites) { | |
return { | |
el, | |
cites: cites.split(' ') | |
}; | |
} else { | |
return findCites(el.parentElement) | |
} | |
} else { | |
return undefined; | |
} | |
}; | |
var bibliorefs = window.document.querySelectorAll('a[role="doc-biblioref"]'); | |
for (var i=0; i<bibliorefs.length; i++) { | |
const ref = bibliorefs[i]; | |
const citeInfo = findCites(ref); | |
if (citeInfo) { | |
tippyHover(citeInfo.el, function() { | |
var popup = window.document.createElement('div'); | |
citeInfo.cites.forEach(function(cite) { | |
var citeDiv = window.document.createElement('div'); | |
citeDiv.classList.add('hanging-indent'); | |
citeDiv.classList.add('csl-entry'); | |
var biblioDiv = window.document.getElementById('ref-' + cite); | |
if (biblioDiv) { | |
citeDiv.innerHTML = biblioDiv.innerHTML; | |
} | |
popup.appendChild(citeDiv); | |
}); | |
return popup.innerHTML; | |
}); | |
} | |
} | |
}); | |
</script> | |
</div> <!-- /content --> | |
</body></html> |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Apparently I have not yet grokked the gist interface as I find it essentially unusable. You can upload files except that you can't unless they have a .txt extension.
What I am trying to show is very simple. Run
and open the warning.html file. The output from the third code block is simply
Now change the yaml header in
warning.qmd
toengine: julia
and runand the output from the third code block contains the warning.