dmckean

#include <stdio.h>
#include <stdlib.h>
#include <assert.h>
#include <getopt.h>
#include <unistd.h>
#include <inttypes.h>

#include <htslib/vcf.h>
#include "bcftools.h"
#include "version.c"

dmckean

import hts
import docopt
from sequtils import toSeq
from strutils import parseInt, join

let doc = """
Bin and tabulate FORMAT data for each VCF record.

Usage:
  tabulate_fmt (-h | --help)

dmckean

parse_samstats <- function(file) {
  
  max.col <- max(count.fields(file, sep = "\t"))
  
  stats.prefixes <- read.table(file, col.names = seq(max.col),
                          colClasses=c("character", rep("NULL", max.col-1)),
                          fill=TRUE)
  
  stats.nrows <- table(stats.prefixes)[unique(stats.prefixes)[,1]]
  stopifnot(unlist(

dmckean

#! /usr/bin/env python
"""
A simple HTTP server for downloading MOBI files from Instapaper
In addition to username, password, a list of folder names and ids
must be provided to access Instapaper folders. These IDs may be 
found in instapaper folder URLs, e.g.
https://www.instapaper.com/u/folder/(id)/(name)
Leave the id to `None` to reach the home Instapaper folder
USAGE: kinstapaper.py [-h] USERNAME PASSWORD ...
"""

dmckean

#! /usr/bin/env bash

hi_color=$(tput setaf 4) #blue
bold=$(tput bold)
underline=$(tput smul)
normal=$(tput sgr0)

read -r -d '' usage << DOC
Prints out a table of tmux sessons, windows, and panels.

dmckean

#! /usr/bin/env python
"""
A simple Burrows-Wheeler transform function in python.

Algorithm presented in:
Burrows M, Wheeler DJ: A Block Sorting Lossless Data Compression Algorithm.
    Technical Report 124. Palo Alto, CA: Digital Equipment Corporation; 1994.

USAGE: bwt.py [-h] [-i INDEX] STRING
"""