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If data is too large, this class can iteratively absorb data
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import numpy as np | |
import matplotlib.pyplot as plt | |
class Iterative_hist(object): | |
''' | |
Collect distribution information in iterative manner. | |
Useful when whole data not fit memory. | |
Usage: | |
if min and max data value is not known, call set_min_max() method, iterative, on hall dataset | |
call add_data() method, for data addition | |
''' | |
def __init__(self, bins=1000, min_value=None, max_value=None): | |
self.min_value = min_value | |
self.max_value = max_value | |
if min_value and max_value: | |
self.hist_bins = np.linspace(self.min, self.max+(self.max-self.min)/self.bins, self.bins) | |
self.bins = bins | |
self.hist = np.zeros(bins) | |
# self.state = False #not updates | |
def update_min_max(self, data): | |
''' | |
update data minimum and maximum values | |
''' | |
min_value = np.min(data) | |
max_value = np.max(data) | |
if not self.min_value or min_value < self.min_value: | |
self.min_value = min_value | |
if not self.max_value or max_value > self.max_value: | |
self.max_value = max_value | |
# self.state = True #updated | |
def update_hist(self, data): | |
''' | |
update histogramm | |
''' | |
assert self.min_value is not None and self.max_value is not None, ' Minimum and maximum values should be defined, given {}, {}. Call update_min_max()'.format(self.min_value, self.max_value) | |
# if self.state: | |
self.hist_bins = np.linspace(self.min_value, self.max_value+(self.max_value-self.min_value)/self.bins, self.bins) | |
# self.state = False | |
self.hist += np.bincount(np.digitize(data, self.hist_bins), minlength=self.bins) | |
def plot(self, log_scale=False): | |
plt.bar(self.hist_bins, self.hist, width=self.hist_bins[1]-self.hist_bins[0]) | |
if log_scale: | |
plt.yscale('log') | |
plt.show() |
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