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April 23, 2016 03:54
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Get list of all quality scores found in quality strings in a bam
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| import pysam | |
| from itertools import chain | |
| def get_qchars(bampath): | |
| return set(chain.from_iterable(set(c.qual) for | |
| c in pysam.AlignmentFile(bampath))) |
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