Created
December 13, 2018 11:27
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import omero.api.IQueryPrx; | |
import omero.gateway.Gateway; | |
import omero.gateway.LoginCredentials; | |
import omero.gateway.SecurityContext; | |
import omero.gateway.model.ExperimenterData; | |
import omero.gateway.model.FilesetData; | |
import omero.log.SimpleLogger; | |
import omero.model.Fileset; | |
import omero.sys.ParametersI; | |
public class GetFilePaths { | |
public static void main(String[] args) throws Exception { | |
try (Gateway gw = new Gateway(new SimpleLogger())) { | |
LoginCredentials lc = new LoginCredentials("user", "pass", "localhost"); | |
ExperimenterData user = gw.connect(lc); | |
SecurityContext ctx = new SecurityContext(user.getGroupId()); | |
long imageId = 119202; | |
IQueryPrx qs = gw.getQueryService(ctx); | |
String query = "select fs from Fileset as fs " | |
+ "join fetch fs.images as image " | |
+ "left outer join fetch fs.usedFiles as usedFile " | |
+ "join fetch usedFile.originalFile as f " | |
+ "where image.id = :imageId"; | |
ParametersI param = new ParametersI(); | |
param.add("imageId", omero.rtypes.rlong(imageId)); | |
Fileset queryResult = (Fileset) qs.findByQuery(query, param); | |
FilesetData fs = new FilesetData(queryResult); | |
System.out.println("Imported from:"); | |
for (String path : fs.getUsedFilePaths()) { | |
System.out.println(path); | |
} | |
System.out.println("\nPath on server:"); | |
for (String path : fs.getAbsolutePaths()) { | |
System.out.println(path); | |
} | |
} | |
} | |
} |
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