dpwrussell

FROM omero-grid-web52
MAINTAINER douglas_russell@hms.havard.edu

USER root
RUN pip install -i https://testpypi.python.org/pypi omero-webtagging-autotag \
    && pip install -i https://testpypi.python.org/pypi omero-webtagging-tagsearch

USER omero
RUN /home/omero/OMERO.server/bin/omero config append omero.web.apps '"omero_webtagging_autotag"' \
    && /home/omero/OMERO.server/bin/omero config append omero.web.ui.center_plugins '["Auto Tag", "omero_webtagging_autotag/auto_tag_init.js.html", "auto_tag_panel"]' \

dpwrussell

FROM omero-grid-web53
MAINTAINER douglas_russell@hms.havard.edu

USER root
RUN pip install -r /home/omero/OMERO.server/share/web/requirements-py27.txt
RUN pip install -i https://testpypi.python.org/pypi omero-webtagging-autotag \
    && pip install -i https://testpypi.python.org/pypi omero-webtagging-tagsearch

USER omero
RUN /home/omero/OMERO.server/bin/omero config append omero.web.apps '"omero_webtagging_autotag"' \

dpwrussell

library("mosaic")
library("Hmisc")

# Load the movies and remove non-US/UK observations
allMovies <- read.csv('movie_metadata.csv', na.strings=c("", "NA"))
subsetMovies <- subset(allMovies, country=='USA' | country=='UK')

# Examine the variables of interest for NA
# No budget
nrow(subsetMovies[is.na(subsetMovies$budget),])

dpwrussell

*.class
*.pyc
fmjdbc.jar

dpwrussell

from sqlalchemy.ext.declarative import declarative_base
from sqlalchemy.orm import (relationship, sessionmaker, subqueryload,
                            with_polymorphic)
from sqlalchemy import create_engine, Column, String, Integer
from sqlalchemy.schema import ForeignKey

Base = declarative_base()


class A(Base):

dpwrussell

Keybase proof

I hereby claim:

• I am dpwrussell on github.
• I am dpwrussell (https://keybase.io/dpwrussell) on keybase.
• I have a public key whose fingerprint is 6692 35CA 6CD1 E5FB 6E4F 7862 568A 08ED 0895 1A87

To claim this, I am signing this object:

dpwrussell

*.sql
*.sed

dpwrussell

import omero
from omero.gateway import BlitzGateway
from omero.sys import ParametersI
import sys

USERNAME = ''
PASSWORD = ''
HOST = 'localhost'
PORT = 4064

dpwrussell

<?xml version="1.0" encoding="UTF-8"?>
<included>
    <!-- syslog ///////////////////////////////////////////////////////////////// -->
    <appender name="SYSLOG" class="ch.qos.logback.classic.net.SyslogAppender">
      <syslogHost>localhost</syslogHost>
      <facility>local6</facility>
      <suffixPattern>OMERO [%thread] %logger %msg</suffixPattern>
    </appender>
</included>

dpwrussell

---
- hosts: itlomerod01
  remote_user: root
  tasks:

  # get the id of an installed script
  - name: check if figure script has been installed (database)
    shell: "{{ omero_base }}/OMERO.server/current/bin/omero script list | grep 'Figure_To_Pdf' | gawk -F '|' '{ print $1 }'"
    sudo: yes
    sudo_user: omero-local