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surprise values
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def surprise( mapcount ): | |
""" | |
calculate the surprise value for a given mapcount. | |
basically if the more uneven the distribution of values, | |
the higher the surprise value. | |
for example, a good field to use for a coverage score | |
might have a surprise value less than 0.5 or 0.6. | |
""" | |
values = mapcount.values() | |
k = float(len(values)) | |
n = float(sum(values)) | |
# if the distribution were uniform, we would expect this value | |
expected = 1 / k | |
# get the proportion for each value | |
p = [ v / n for v in values ] | |
# calculate the exponent (this determines the penalty) | |
y = 1 / (sd(p) * (k ** 2)) | |
# the absolute value of the difference for the expected | |
p_diff = [ abs(x - expected) for x in p ] | |
# calculate the actual value | |
value = sum( [ ( (diff ** y) ) for diff in p_diff ] ) / k | |
return value | |
def sd( vector ): | |
from math import sqrt | |
n = float(len(vector)) | |
mean = sum(vector) / n | |
stdv = sqrt( sum([ (x - mean) ** 2 for x in vector ])/ (n - 1) ) | |
return stdv | |
print surprise({"value1": 100, "value2": 50, "value3": 40000}) # 0.846230952166 | |
print surprise({"value1": 100, "value2": 50, "value3": 400}) # 0.638978305914 | |
print surprise({"value1": 100, "value2": 50, "value3": 40}) # 0.255465721389 | |
print surprise({"value1": 100, "value2": 50, "value3": 75}) # 0.0740740740741 |
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