Created
April 15, 2010 16:25
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bfast bwa bfast2
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| sh ./clean.sh && ./run_experiment.sh 0 2>&1 | grep "versions" | grep -E "^\+ \/Users" > /tmp/out.txt | |
| + /Users/drio/projects/bfast_related/versions/bfast/bfast/bfast fasta2brg -A0 -f ecoli.drio.test.fa | |
| + /Users/drio/projects/bfast_related/versions/bfast/bfast/bfast fasta2brg -A1 -f ecoli.drio.test.fa | |
| + /Users/drio/projects/bfast_related/versions/bfast/bfast/bfast bwaaln -t8 ./bfast.bwt.indexes/ecoli.drio.test.fa ./bf.reads.fastq | |
| + /Users/drio/projects/bfast_related/versions/bfast/bfast/bfast localalign -u -n1 -A0 -f ./bfast.bwt.indexes/ecoli.drio.test.fa -m bf.matches.bmf | |
| + /Users/drio/projects/bfast_related/versions/bfast/bfast/bfast postprocess -f ./bfast.bwt.indexes/ecoli.drio.test.fa -i bf.aligned.baf -n3 -a3 -O3 |
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