pe solid data

old_pe

LOG: Processing arguments
LOG: Parsing options
LOG: Start at 2010-04-30T17:22:25-05:00
LOG: action = sea_create
LOG: c_design = /users/p-solid/ccds
LOG: run_name = 0097_20100115_2_SP_AWG_HCC_L09_0112_T_000sA_01003280874_1
LOG: Loading action: /stornext/snfs1/next-gen/drio-scratch/working.copies/hgsc.bfast.pipe/lib/d_actions/sea_remove
LOG: Loading action: /stornext/snfs1/next-gen/drio-scratch/working.copies/hgsc.bfast.pipe/lib/d_actions/sea_create
LOG: Instanciating Action: sea_create
LOG: Checking if SEA is already there ...
LOG: Good, not found, SEA dir will be: /stornext/snfs4/next-gen/solid/analysis/solid0097/2010/04/0097_20100115_2_SP_AWG_HCC_L09_0112_T_000sA_01003280874_1
LOG: Logging raw_data in: /tmp/fire.1586.txt
LOG: SEA is FR but raw data != 2 (4)
p-solid@stornext7:~ $ cat /tmp/fire.1586.txt 
/stornext/snfs4/next-gen/solid/results/solid0097/0097_20100115_2_SP/AWG_HCC_L09_0112_T_000sA_01003280874_1/results.F1B1/primary.20100119154555030/reads/0097_20100115_2_SP_AWG_HCC_L09_0112_T_000sA_01003280874_1_R3_QV.qual

/stornext/snfs4/next-gen/solid/results/solid0097/0097_20100115_2_SP/AWG_HCC_L09_0112_T_000sA_01003280874_1/results.F1B1/primary.20100119154555030/reads/0097_20100115_2_SP_AWG_HCC_L09_0112_T_000sA_01003280874_1_R3.csfasta//

/stornext/snfs4/next-gen/solid/results/solid0097/0097_20100115_2_SP/AWG_HCC_L09_0112_T_000sA_01003280874_1/results.F1B1/primary.20100127160547003/reads/0097_20100115_2_SP_AWG_HCC_L09_0112_T_000sA_01003280874_1_F3.csfasta

/stornext/snfs4/next-gen/solid/results/solid0097/0097_20100115_2_SP/AWG_HCC_L09_0112_T_000sA_01003280874_1/results.F1B1/primary.20100127160547003/reads/0097_20100115_2_SP_AWG_HCC_L09_0112_T_000sA_01003280874_1_F3_QV.qual