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October 21, 2012 09:25
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| ###### R 2.15.1 | |
| marcow@prime:R$ R CMD CHECK metaGSEA | |
| Loading required package: utils | |
| ##------ Sun Oct 21 20:17:04 2012 ------## | |
| * using log directory ‘/Volumes/SANDISK16/R/metaGSEA.Rcheck’ | |
| * using R version 2.15.1 (2012-06-22) | |
| * using platform: x86_64-apple-darwin9.8.0 (64-bit) | |
| * using session charset: UTF-8 | |
| * checking for file ‘metaGSEA/DESCRIPTION’ ... OK | |
| * checking extension type ... Package | |
| * this is package ‘metaGSEA’ version ‘1.1.2’ | |
| * checking package namespace information ... OK | |
| * checking package dependencies ... OK | |
| * checking if this is a source package ... OK | |
| * checking if there is a namespace ... OK | |
| * checking for executable files ... OK | |
| * checking whether package ‘metaGSEA’ can be installed ... OK | |
| * checking installed package size ... NOTE | |
| installed size is 8.9Mb | |
| sub-directories of 1Mb or more: | |
| bin 4.0Mb | |
| examples 3.8Mb | |
| * checking package directory ... OK | |
| * checking for portable file names ... OK | |
| * checking for sufficient/correct file permissions ... OK | |
| * checking DESCRIPTION meta-information ... OK | |
| * checking top-level files ... OK | |
| * checking index information ... OK | |
| * checking package subdirectories ... OK | |
| * checking R files for non-ASCII characters ... OK | |
| * checking R files for syntax errors ... OK | |
| * checking whether the package can be loaded ... OK | |
| * checking whether the package can be loaded with stated dependencies ... WARNING | |
| Loading required package: excelIO | |
| Loading required package: gdata | |
| gdata: read.xls support for ‘XLS’ (Excel 97-2004) files ENABLED. | |
| gdata: read.xls support for ‘XLSX’ (Excel 2007+) files ENABLED. | |
| Attaching package: ‘excelIO’ | |
| The following object(s) are masked from ‘package:gdata’: | |
| read.xls | |
| Loading required package: mjcbase | |
| Attaching package: ‘mjcbase’ | |
| The following object(s) are masked from ‘package:excelIO’: | |
| write.delim | |
| The following object(s) are masked from ‘package:gdata’: | |
| trim | |
| The following object(s) are masked from ‘package:base’: | |
| list2env, paste0, prettyNum, trunc | |
| Loading required package: mjcgraphics | |
| bigmemory >= 4.0 is a major revision since 3.1.2; please see package | |
| biganalytics and http://www.bigmemory.org for more information. | |
| KernSmooth 2.23 loaded | |
| Copyright M. P. Wand 1997-2009 | |
| Error : objects ‘.__T__sort:mjcbase’, ‘sort’ are not exported by ‘namespace:mjcbase’ | |
| In addition: Warning messages: | |
| 1: No function found corresponding to methods exports from ‘limma’ for: ‘show’ | |
| 2: replacing previous import ‘image’ when loading ‘graphics’ | |
| 3: replacing previous import ‘density’ when loading ‘stats’ | |
| 4: replacing previous import ‘residuals’ when loading ‘stats’ | |
| Error: package/namespace load failed for ‘metaGSEA’ | |
| Execution halted | |
| It looks like this package (or one of its dependent packages) has an | |
| unstated dependence on a standard package. All dependencies must be | |
| declared in DESCRIPTION. | |
| See the information on DESCRIPTION files in the chapter ‘Creating R | |
| packages’ of the ‘Writing R Extensions’ manual. | |
| * checking whether the package can be unloaded cleanly ... WARNING | |
| Error : objects ‘.__T__sort:mjcbase’, ‘sort’ are not exported by ‘namespace:mjcbase’ | |
| In addition: Warning messages: | |
| 1: No function found corresponding to methods exports from ‘limma’ for: ‘show’ | |
| 2: replacing previous import ‘image’ when loading ‘graphics’ | |
| 3: replacing previous import ‘density’ when loading ‘stats’ | |
| 4: replacing previous import ‘residuals’ when loading ‘stats’ | |
| Error: package/namespace load failed for ‘metaGSEA’ | |
| Execution halted | |
| * checking whether the namespace can be loaded with stated dependencies ... OK | |
| * checking whether the namespace can be unloaded cleanly ... OK | |
| * checking for unstated dependencies in R code ... WARNING | |
| Error: package/namespace load failed for ‘metaGSEA’ | |
| Call sequence: | |
| 2: stop(gettextf("package/namespace load failed for %s", sQuote(package)), | |
| call. = FALSE, domain = NA) | |
| 1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE) | |
| Execution halted | |
| See the information on DESCRIPTION files in the chapter ‘Creating R | |
| packages’ of the ‘Writing R Extensions’ manual. | |
| * checking S3 generic/method consistency ... WARNING | |
| Error: package/namespace load failed for ‘metaGSEA’ | |
| Call sequence: | |
| 2: stop(gettextf("package/namespace load failed for %s", sQuote(package)), | |
| call. = FALSE, domain = NA) | |
| 1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE) | |
| Execution halted | |
| See section ‘Generic functions and methods’ of the ‘Writing R | |
| Extensions’ manual. | |
| * checking replacement functions ... WARNING | |
| Error: package/namespace load failed for ‘metaGSEA’ | |
| Call sequence: | |
| 2: stop(gettextf("package/namespace load failed for %s", sQuote(package)), | |
| call. = FALSE, domain = NA) | |
| 1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE) | |
| Execution halted | |
| The argument of a replacement function which corresponds to the right | |
| hand side must be named ‘value’. | |
| * checking foreign function calls ... WARNING | |
| Error: package/namespace load failed for ‘metaGSEA’ | |
| Call sequence: | |
| 2: stop(gettextf("package/namespace load failed for %s", sQuote(package)), | |
| call. = FALSE, domain = NA) | |
| 1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE) | |
| Execution halted | |
| See the chapter ‘System and foreign language interfaces’ of the | |
| ‘Writing R Extensions’ manual. | |
| * checking R code for possible problems ... OK | |
| * checking Rd files ... OK | |
| * checking Rd metadata ... OK | |
| * checking Rd cross-references ... OK | |
| * checking for missing documentation entries ... OK | |
| * checking for code/documentation mismatches ... WARNING | |
| Error: package/namespace load failed for ‘metaGSEA’ | |
| Call sequence: | |
| 2: stop(gettextf("package/namespace load failed for %s", sQuote(package)), | |
| call. = FALSE, domain = NA) | |
| 1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE) | |
| Execution halted | |
| Error: package/namespace load failed for ‘metaGSEA’ | |
| Call sequence: | |
| 2: stop(gettextf("package/namespace load failed for %s", sQuote(package)), | |
| call. = FALSE, domain = NA) | |
| 1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE) | |
| Execution halted | |
| Error: package/namespace load failed for ‘metaGSEA’ | |
| Call sequence: | |
| 2: stop(gettextf("package/namespace load failed for %s", sQuote(package)), | |
| call. = FALSE, domain = NA) | |
| 1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE) | |
| Execution halted | |
| * checking Rd \usage sections ... NOTE | |
| Error: package/namespace load failed for ‘metaGSEA’ | |
| Call sequence: | |
| 2: stop(gettextf("package/namespace load failed for %s", sQuote(package)), | |
| call. = FALSE, domain = NA) | |
| 1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE) | |
| Execution halted | |
| The \usage entries for S3 methods should use the \method markup and not | |
| their full name. | |
| See the chapter ‘Writing R documentation files’ in the ‘Writing R | |
| Extensions’ manual. | |
| * checking Rd contents ... OK | |
| * checking for unstated dependencies in examples ... OK | |
| * checking examples ... OK | |
| * checking PDF version of manual ... OK | |
| WARNING: There were 7 warnings. | |
| NOTE: There were 2 notes. | |
| See | |
| ‘/Volumes/SANDISK16/R/metaGSEA.Rcheck/00check.log’ | |
| for details. | |
| ## no major concerns during build, INSTALL, or package load | |
| marcow@prime:R$ R CMD build metaGSEA | |
| Loading required package: utils | |
| ##------ Sun Oct 21 20:40:56 2012 ------## | |
| * checking for file ‘metaGSEA/DESCRIPTION’ ... OK | |
| * preparing ‘metaGSEA’: | |
| * checking DESCRIPTION meta-information ... OK | |
| * checking for LF line-endings in source and make files | |
| * checking for empty or unneeded directories | |
| * building ‘metaGSEA_1.1.2.tar.gz’ | |
| marcow@prime:R$ R CMD INSTALL metaGSEA_1.1.2.tar.gz | |
| Loading required package: utils | |
| ##------ Sun Oct 21 20:41:05 2012 ------## | |
| * installing to library ‘/Library/Frameworks/R.framework/Versions/2.15/Resources/library’ | |
| * installing *source* package ‘metaGSEA’ ... | |
| ** R | |
| ** inst | |
| ** preparing package for lazy loading | |
| Warning: replacing previous import ‘image’ when loading ‘graphics’ | |
| Warning: replacing previous import ‘density’ when loading ‘stats’ | |
| Warning: replacing previous import ‘residuals’ when loading ‘stats’ | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| *** arch - i386 | |
| Loading required package: utils | |
| ##------ Sun Oct 21 20:41:26 2012 ------## | |
| Warning: replacing previous import ‘image’ when loading ‘graphics’ | |
| Warning: replacing previous import ‘density’ when loading ‘stats’ | |
| Warning: replacing previous import ‘residuals’ when loading ‘stats’ | |
| *** arch - x86_64 | |
| Loading required package: utils | |
| ##------ Sun Oct 21 20:41:41 2012 ------## | |
| Warning: replacing previous import ‘image’ when loading ‘graphics’ | |
| Warning: replacing previous import ‘density’ when loading ‘stats’ | |
| Warning: replacing previous import ‘residuals’ when loading ‘stats’ | |
| * DONE (metaGSEA) | |
| marcow@prime:R$ R | |
| Loading required package: utils | |
| ##------ Sun Oct 21 20:42:31 2012 ------## | |
| > library(metaGSEA) | |
| Loading required package: excelIO | |
| Loading required package: gdata | |
| gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED. | |
| gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED. | |
| Attaching package: ‘gdata’ | |
| The following object(s) are masked from ‘package:stats’: | |
| nobs | |
| The following object(s) are masked from ‘package:utils’: | |
| object.size | |
| Attaching package: ‘excelIO’ | |
| The following object(s) are masked from ‘package:gdata’: | |
| read.xls | |
| Loading required package: mjcbase | |
| Attaching package: ‘mjcbase’ | |
| The following object(s) are masked from ‘package:excelIO’: | |
| write.delim | |
| The following object(s) are masked from ‘package:gdata’: | |
| trim | |
| The following object(s) are masked from ‘package:utils’: | |
| zip | |
| The following object(s) are masked from ‘package:base’: | |
| list2env, paste0, prettyNum, sort, trunc | |
| Loading required package: mjcgraphics | |
| bigmemory >= 4.0 is a major revision since 3.1.2; please see package | |
| biganalytics and http://www.bigmemory.org for more information. | |
| KernSmooth 2.23 loaded | |
| Copyright M. P. Wand 1997-2009 | |
| Attaching package: ‘mjcgraphics’ | |
| The following object(s) are masked from ‘package:grDevices’: | |
| dev.off, jpeg, pdf, png | |
| Warning messages: | |
| 1: replacing previous import ‘image’ when loading ‘graphics’ | |
| 2: replacing previous import ‘density’ when loading ‘stats’ | |
| 3: replacing previous import ‘residuals’ when loading ‘stats’ | |
| > | |
| ### R 2.14.2 | |
| marcow@prime:R$ R CMD CHECK metaGSEA | |
| Loading required package: utils | |
| ##------ Sun Oct 21 20:12:23 2012 ------## | |
| * using log directory ‘/Volumes/SANDISK16/R/metaGSEA.Rcheck’ | |
| * using R version 2.14.2 (2012-02-29) | |
| * using platform: x86_64-apple-darwin9.8.0 (64-bit) | |
| * using session charset: UTF-8 | |
| * checking for file ‘metaGSEA/DESCRIPTION’ ... OK | |
| * checking extension type ... Package | |
| * this is package ‘metaGSEA’ version ‘1.1.2’ | |
| * checking package namespace information ... OK | |
| * checking package dependencies ... OK | |
| * checking if this is a source package ... OK | |
| * checking if there is a namespace ... OK | |
| * checking for executable files ... OK | |
| * checking whether package ‘metaGSEA’ can be installed ... OK | |
| * checking installed package size ... NOTE | |
| installed size is 8.9Mb | |
| sub-directories of 1Mb or more: | |
| bin 4.0Mb | |
| examples 3.8Mb | |
| * checking package directory ... OK | |
| * checking for portable file names ... OK | |
| * checking for sufficient/correct file permissions ... OK | |
| * checking DESCRIPTION meta-information ... OK | |
| * checking top-level files ... OK | |
| * checking index information ... OK | |
| * checking package subdirectories ... OK | |
| * checking R files for non-ASCII characters ... OK | |
| * checking R files for syntax errors ... OK | |
| * checking whether the package can be loaded ... OK | |
| * checking whether the package can be loaded with stated dependencies ... WARNING | |
| Loading required package: excelIO | |
| Loading required package: gdata | |
| gdata: read.xls support for ‘XLS’ (Excel 97-2004) files ENABLED. | |
| gdata: read.xls support for ‘XLSX’ (Excel 2007+) files ENABLED. | |
| Attaching package: ‘excelIO’ | |
| The following object(s) are masked from ‘package:gdata’: | |
| read.xls | |
| Loading required package: mjcbase | |
| Attaching package: ‘mjcbase’ | |
| The following object(s) are masked from ‘package:excelIO’: | |
| write.delim | |
| The following object(s) are masked from ‘package:gdata’: | |
| trim | |
| The following object(s) are masked from ‘package:base’: | |
| list2env, prettyNum, trunc | |
| Loading required package: mjcgraphics | |
| KernSmooth 2.23 loaded | |
| Copyright M. P. Wand 1997-2009 | |
| Error : objects ‘.__T__sort:mjcbase’, ‘sort’ are not exported by ‘namespace:mjcbase’ | |
| Error: package/namespace load failed for ‘metaGSEA’ | |
| Execution halted | |
| It looks like this package (or one of its dependent packages) has an | |
| unstated dependence on a standard package. All dependencies must be | |
| declared in DESCRIPTION. | |
| See the information on DESCRIPTION files in the chapter ‘Creating R | |
| packages’ of the ‘Writing R Extensions’ manual. | |
| * checking whether the package can be unloaded cleanly ... WARNING | |
| Error : objects ‘.__T__sort:mjcbase’, ‘sort’ are not exported by ‘namespace:mjcbase’ | |
| Error: package/namespace load failed for ‘metaGSEA’ | |
| Execution halted | |
| * checking whether the namespace can be loaded with stated dependencies ... OK | |
| * checking whether the namespace can be unloaded cleanly ... OK | |
| * checking for unstated dependencies in R code ... WARNING | |
| Error: package/namespace load failed for ‘metaGSEA’ | |
| Call sequence: | |
| 2: stop(gettextf("package/namespace load failed for %s", sQuote(package)), | |
| call. = FALSE, domain = NA) | |
| 1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE) | |
| Execution halted | |
| See the information on DESCRIPTION files in the chapter ‘Creating R | |
| packages’ of the ‘Writing R Extensions’ manual. | |
| * checking S3 generic/method consistency ... WARNING | |
| reorder: | |
| function(x, ...) | |
| reorder.gct: | |
| function(gct, method, reverse) | |
| reorder: | |
| function(x, ...) | |
| reorder.gct.file: | |
| function(gct.file, gct.file.out, method, reverse) | |
| See section ‘Generic functions and methods’ of the ‘Writing R | |
| Extensions’ manual. | |
| * checking replacement functions ... OK | |
| * checking foreign function calls ... OK | |
| * checking R code for possible problems ... OK | |
| * checking Rd files ... OK | |
| * checking Rd metadata ... OK | |
| * checking Rd cross-references ... OK | |
| * checking for missing documentation entries ... OK | |
| * checking for code/documentation mismatches ... OK | |
| * checking Rd \usage sections ... NOTE | |
| S3 methods shown with full name in documentation object 'print.gsea.venn': | |
| ‘print.gsea.venn’ | |
| S3 methods shown with full name in documentation object 'reorder.gct': | |
| ‘reorder.gct’ | |
| S3 methods shown with full name in documentation object 'reorder.gct.file': | |
| ‘reorder.gct.file’ | |
| S3 methods shown with full name in documentation object 'subset.gsea': | |
| ‘subset.gsea’ | |
| The \usage entries for S3 methods should use the \method markup and not | |
| their full name. | |
| See the chapter ‘Writing R documentation files’ in the ‘Writing R | |
| Extensions’ manual. | |
| * checking Rd contents ... OK | |
| * checking for unstated dependencies in examples ... OK | |
| * checking examples ... OK | |
| * checking PDF version of manual ... OK | |
| WARNING: There were 4 warnings, see | |
| ‘/Volumes/SANDISK16/R/metaGSEA.Rcheck/00check.log’ | |
| for details | |
| #### R 2.13.1 | |
| marcow@prime:R$ R CMD CHECK metaGSEA | |
| Loading required package: utils | |
| ##------ Sun Oct 21 20:36:01 2012 ------## | |
| * using log directory ‘/Volumes/SANDISK16/R/metaGSEA.Rcheck’ | |
| * using R version 2.13.1 (2011-07-08) | |
| * using platform: x86_64-apple-darwin9.8.0 (64-bit) | |
| * using session charset: UTF-8 | |
| * checking for file ‘metaGSEA/DESCRIPTION’ ... OK | |
| * checking extension type ... Package | |
| * this is package ‘metaGSEA’ version ‘1.1.2’ | |
| * checking package name space information ... OK | |
| * checking package dependencies ... OK | |
| * checking if this is a source package ... OK | |
| * checking for executable files ... OK | |
| * checking whether package ‘metaGSEA’ can be installed ... OK | |
| * checking installed package size ... NOTE | |
| installed size is 8.9Mb | |
| sub-directories of 1Mb or more: | |
| bin 4.0Mb | |
| examples 3.8Mb | |
| * checking package directory ... OK | |
| * checking for portable file names ... OK | |
| * checking for sufficient/correct file permissions ... OK | |
| * checking DESCRIPTION meta-information ... OK | |
| * checking top-level files ... OK | |
| * checking index information ... OK | |
| * checking package subdirectories ... OK | |
| * checking R files for non-ASCII characters ... OK | |
| * checking R files for syntax errors ... OK | |
| * checking whether the package can be loaded ... OK | |
| * checking whether the package can be loaded with stated dependencies ... WARNING | |
| Loading required package: excelIO | |
| Loading required package: gdata | |
| gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED. | |
| gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED. | |
| Attaching package: 'excelIO' | |
| The following object(s) are masked from 'package:gdata': | |
| read.xls | |
| Loading required package: mjcbase | |
| Attaching package: 'mjcbase' | |
| The following object(s) are masked from 'package:excelIO': | |
| write.delim | |
| The following object(s) are masked from 'package:gdata': | |
| trim | |
| The following object(s) are masked from 'package:base': | |
| list2env, prettyNum, trunc | |
| Loading required package: mjcgraphics | |
| Loading required package: methods | |
| KernSmooth 2.23 loaded | |
| Copyright M. P. Wand 1997-2009 | |
| Error : objects ‘.__T__sort:mjcbase’, ‘sort’ are not exported by 'namespace:mjcbase' | |
| Error: package/namespace load failed for 'metaGSEA' | |
| Execution halted | |
| It looks like this package (or one of its dependent packages) has an | |
| unstated dependence on a standard package. All dependencies must be | |
| declared in DESCRIPTION. | |
| See the information on DESCRIPTION files in the chapter 'Creating R | |
| packages' of the 'Writing R Extensions' manual. | |
| * checking whether the package can be unloaded cleanly ... WARNING | |
| Error : objects ‘.__T__sort:mjcbase’, ‘sort’ are not exported by 'namespace:mjcbase' | |
| Error: package/namespace load failed for 'metaGSEA' | |
| Execution halted | |
| * checking whether the name space can be loaded with stated dependencies ... OK | |
| * checking whether the name space can be unloaded cleanly ... OK | |
| * checking for unstated dependencies in R code ... WARNING | |
| Error: package/namespace load failed for 'metaGSEA' | |
| Call sequence: | |
| 2: stop(gettextf("package/namespace load failed for '%s'", package), | |
| call. = FALSE, domain = NA) | |
| 1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE) | |
| Execution halted | |
| See the information on DESCRIPTION files in the chapter 'Creating R | |
| packages' of the 'Writing R Extensions' manual. | |
| * checking S3 generic/method consistency ... WARNING | |
| Error: package/namespace load failed for 'metaGSEA' | |
| Call sequence: | |
| 2: stop(gettextf("package/namespace load failed for '%s'", package), | |
| call. = FALSE, domain = NA) | |
| 1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE) | |
| Execution halted | |
| See section 'Generic functions and methods' of the 'Writing R | |
| Extensions' manual. | |
| * checking replacement functions ... WARNING | |
| Error: package/namespace load failed for 'metaGSEA' | |
| Call sequence: | |
| 2: stop(gettextf("package/namespace load failed for '%s'", package), | |
| call. = FALSE, domain = NA) | |
| 1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE) | |
| Execution halted | |
| The argument of a replacement function which corresponds to the right | |
| hand side must be named 'value'. | |
| * checking foreign function calls ... WARNING | |
| Error: package/namespace load failed for 'metaGSEA' | |
| Call sequence: | |
| 2: stop(gettextf("package/namespace load failed for '%s'", package), | |
| call. = FALSE, domain = NA) | |
| 1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE) | |
| Execution halted | |
| See the chapter 'System and foreign language interfaces' of the | |
| 'Writing R Extensions' manual. | |
| * checking R code for possible problems ... OK | |
| * checking Rd files ... OK | |
| * checking Rd metadata ... OK | |
| * checking Rd cross-references ... OK | |
| * checking for missing documentation entries ... ERROR | |
| Error: package/namespace load failed for 'metaGSEA' | |
| Call sequence: | |
| 2: stop(gettextf("package/namespace load failed for '%s'", package), | |
| call. = FALSE, domain = NA) | |
| 1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE) | |
| Execution halted | |
| ## no meesages during R CMD build, INSTALL, or upon package loading: | |
| marcow@prime:R$ R CMD build metaGSEA | |
| Loading required package: utils | |
| ##------ Sun Oct 21 20:39:37 2012 ------## | |
| * checking for file ‘metaGSEA/DESCRIPTION’ ... OK | |
| * preparing ‘metaGSEA’: | |
| * checking DESCRIPTION meta-information ... OK | |
| * checking for LF line-endings in source and make files | |
| * checking for empty or unneeded directories | |
| * building ‘metaGSEA_1.1.2.tar.gz’ | |
| marcow@prime:R$ R CMD INSTALL metaGSEA | |
| Loading required package: utils | |
| ##------ Sun Oct 21 20:39:46 2012 ------## | |
| * installing to library ‘/Library/Frameworks/R.framework/Versions/2.13/Resources/library’ | |
| * installing *source* package ‘metaGSEA’ ... | |
| ** R | |
| ** inst | |
| ** preparing package for lazy loading | |
| Loading required package: gdata | |
| gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED. | |
| gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED. | |
| Attaching package: 'gdata' | |
| The following object(s) are masked from 'package:stats': | |
| nobs | |
| The following object(s) are masked from 'package:utils': | |
| object.size | |
| Attaching package: 'excelIO' | |
| The following object(s) are masked from 'package:gdata': | |
| read.xls | |
| Attaching package: 'mjcbase' | |
| The following object(s) are masked from 'package:excelIO': | |
| write.delim | |
| The following object(s) are masked from 'package:gdata': | |
| trim | |
| The following object(s) are masked from 'package:utils': | |
| zip | |
| The following object(s) are masked from 'package:base': | |
| list2env, prettyNum, sort, trunc | |
| KernSmooth 2.23 loaded | |
| Copyright M. P. Wand 1997-2009 | |
| Attaching package: 'mjcgraphics' | |
| The following object(s) are masked from 'package:grDevices': | |
| dev.off, jpeg, pdf, png | |
| ** help | |
| *** installing help indices | |
| ** building package indices ... | |
| ** testing if installed package can be loaded | |
| Loading required package: utils | |
| ##------ Sun Oct 21 20:39:57 2012 ------## | |
| * DONE (metaGSEA) | |
| marcow@prime:R$ R | |
| Loading required package: utils | |
| ##------ Sun Oct 21 20:38:19 2012 ------## | |
| > library(metaGSEA) | |
| Loading required package: excelIO | |
| Loading required package: gdata | |
| gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED. | |
| gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED. | |
| Attaching package: 'gdata' | |
| The following object(s) are masked from 'package:stats': | |
| nobs | |
| The following object(s) are masked from 'package:utils': | |
| object.size | |
| Attaching package: 'excelIO' | |
| The following object(s) are masked from 'package:gdata': | |
| read.xls | |
| Loading required package: mjcbase | |
| Attaching package: 'mjcbase' | |
| The following object(s) are masked from 'package:excelIO': | |
| write.delim | |
| The following object(s) are masked from 'package:gdata': | |
| trim | |
| The following object(s) are masked from 'package:utils': | |
| zip | |
| The following object(s) are masked from 'package:base': | |
| list2env, prettyNum, sort, trunc | |
| Loading required package: mjcgraphics | |
| KernSmooth 2.23 loaded | |
| Copyright M. P. Wand 1997-2009 | |
| Attaching package: 'mjcgraphics' | |
| The following object(s) are masked from 'package:grDevices': | |
| dev.off, jpeg, pdf, png | |
| > |
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