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June 30, 2016 03:21
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-bash-4.1$ cat .nextflow.log | |
Jun-29 22:15:56.636 [main] DEBUG nextflow.cli.Launcher - Setting http proxy: [proxy.swmed.edu, 3128] | |
Jun-29 22:15:56.688 [main] DEBUG nextflow.cli.Launcher - Setting https proxy: [proxy.swmed.edu, 3128] | |
Jun-29 22:15:56.688 [main] DEBUG nextflow.cli.Launcher - $> /cm/shared/apps/nextflow/0.20.1/bin/nextflow test.nextflow | |
Jun-29 22:15:56.688 [main] INFO nextflow.cli.CmdRun - N E X T F L O W ~ version 0.20.1 | |
Jun-29 22:15:56.689 [main] INFO nextflow.cli.CmdRun - Launching test.nextflow | |
Jun-29 22:15:57.155 [main] DEBUG nextflow.Session - Session uuid: c95fb10b-1a83-4278-a005-753ebb1cd5a7 | |
Jun-29 22:15:57.156 [main] DEBUG nextflow.Session - Executor pool size: 8 | |
Jun-29 22:15:57.180 [main] DEBUG nextflow.cli.CmdRun - | |
Version: 0.20.1 build 3853 | |
Modified: 18-06-2016 07:00 UTC (02:00 CDT) | |
System: Linux 2.6.32-642.el6.x86_64 | |
Runtime: Groovy 2.4.7 on Java HotSpot(TM) 64-Bit Server VM 1.7.0_51-b13 | |
Encoding: UTF-8 (UTF-8) | |
Process: [email protected] [198.215.54.67] | |
Jun-29 22:15:57.190 [main] DEBUG nextflow.Session - Script base path does not exist or is not a directory: /project/apps/astrocyte-test/bin | |
Jun-29 22:15:57.190 [main] DEBUG nextflow.Session - Session start invoked | |
Jun-29 22:15:57.193 [main] DEBUG nextflow.processor.TaskDispatcher - Dispatcher > start | |
Jun-29 22:15:57.195 [main] DEBUG nextflow.script.ScriptRunner - > Script parsing | |
Jun-29 22:15:57.349 [main] DEBUG nextflow.script.ScriptRunner - > Launching execution | |
Jun-29 22:15:57.449 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null | |
Jun-29 22:15:57.449 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local' | |
Jun-29 22:15:57.455 [main] DEBUG nextflow.executor.Executor - Initializing executor: local | |
Jun-29 22:15:57.457 [main] INFO nextflow.executor.Executor - [warm up] executor > local | |
Jun-29 22:15:57.464 [main] DEBUG n.processor.LocalPollingMonitor - Creating local task monitor for executor 'local' > cpus: 8; memory: 15.6 GB; pollInterval: 100ms; dumpInterval: 5m | |
Jun-29 22:15:57.468 [main] DEBUG nextflow.processor.TaskDispatcher - Starting monitor: LocalPollingMonitor | |
Jun-29 22:15:57.468 [main] DEBUG n.processor.TaskPollingMonitor - >>> barrier register (monitor: local) | |
Jun-29 22:15:57.470 [main] DEBUG nextflow.executor.Executor - Invoke register for executor: local | |
Jun-29 22:15:57.509 [main] DEBUG nextflow.Session - >>> barrier register (process: testproc) | |
Jun-29 22:15:57.523 [main] DEBUG n.processor.ParallelTaskProcessor - Creating operator > testproc -- maxForks: 8 | |
Jun-29 22:15:57.547 [main] DEBUG nextflow.script.ScriptRunner - > Await termination | |
Jun-29 22:15:57.547 [main] DEBUG nextflow.Session - Session await | |
Jun-29 22:20:57.670 [Thread-2] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 0 -- first: null |
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