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May 25, 2017 15:29
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Nextflow crash
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| May-23 13:38:56.471 [main] DEBUG nextflow.cli.Launcher - Setting http proxy: [proxy.swmed.edu, 3128] | |
| May-23 13:38:56.555 [main] DEBUG nextflow.cli.Launcher - Setting https proxy: [proxy.swmed.edu, 3128] | |
| May-23 13:38:56.555 [main] DEBUG nextflow.cli.Launcher - $> /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/bin/nextflow run rnaseq-cluster-slurm/main.nf --config /project/SCCC/DOrso_lab/s418665/config.txt --fasta genome.fa --gtf genes.gtf --lib p --readLen 75 --egs 2451960000 --strandInfo frFirstStrand --outdir results_star --aligner star | |
| May-23 13:38:56.620 [main] INFO nextflow.cli.CmdRun - N E X T F L O W ~ version 0.24.1-SNAPSHOT | |
| May-23 13:38:56.655 [main] INFO nextflow.cli.CmdRun - Launching `rnaseq-cluster-slurm/main.nf` [clever_roentgen] - revision: 95d562219a | |
| May-23 13:38:56.668 [main] DEBUG nextflow.config.ConfigBuilder - Found config base: /project/SCCC/DOrso_lab/s418665/rnaseq-cluster-slurm/nextflow.config | |
| May-23 13:38:56.670 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /project/SCCC/DOrso_lab/s418665/rnaseq-cluster-slurm/nextflow.config | |
| May-23 13:38:56.997 [main] DEBUG nextflow.config.ConfigBuilder - Setting config profile: 'standard' | |
| May-23 13:38:57.081 [main] DEBUG nextflow.Session - Session uuid: b274a97f-b819-4b13-9289-87b8e879bf88 | |
| May-23 13:38:57.081 [main] DEBUG nextflow.Session - Run name: clever_roentgen | |
| May-23 13:38:57.082 [main] DEBUG nextflow.Session - Executor pool size: 40 | |
| May-23 13:38:57.098 [main] DEBUG nextflow.cli.CmdRun - | |
| Version: 0.24.1-SNAPSHOT build 4244 | |
| Modified: 24-03-2017 11:25 UTC (06:25 CDT) | |
| System: Linux 2.6.32-279.el6.x86_64 | |
| Runtime: Groovy 2.4.10 on Java HotSpot(TM) 64-Bit Server VM 1.7.0_51-b13 | |
| Encoding: UTF-8 (UTF-8) | |
| Process: 76395@Nucleus005 [192.168.54.5] | |
| CPUs: 40 - Mem: 125.9 GB (101.4 GB) - Swap: 61 GB (51.8 GB) | |
| May-23 13:38:57.124 [main] DEBUG nextflow.Session - Work-dir: /project/SCCC/DOrso_lab/s418665/work [lustre] | |
| May-23 13:38:57.125 [main] DEBUG nextflow.Session - Script base path does not exist or is not a directory: /project/SCCC/DOrso_lab/s418665/rnaseq-cluster-slurm/bin | |
| May-23 13:38:57.277 [main] DEBUG nextflow.Session - Session start invoked | |
| May-23 13:38:57.281 [main] DEBUG nextflow.processor.TaskDispatcher - Dispatcher > start | |
| May-23 13:38:57.282 [main] DEBUG nextflow.script.ScriptRunner - > Script parsing | |
| May-23 13:38:59.177 [main] DEBUG nextflow.script.ScriptRunner - > Launching execution | |
| May-23 13:38:59.202 [main] INFO nextflow.Nextflow - | |
| May-23 13:38:59.202 [main] INFO nextflow.Nextflow - VERSION 1.0.0 - CIPHER | |
| May-23 13:38:59.202 [main] INFO nextflow.Nextflow - ********************************************** | |
| May-23 13:38:59.202 [main] INFO nextflow.Nextflow - | |
| May-23 13:38:59.203 [main] INFO nextflow.Nextflow - config: /project/SCCC/DOrso_lab/s418665/config.txt | |
| May-23 13:38:59.203 [main] INFO nextflow.Nextflow - fasta: /project/SCCC/DOrso_lab/s418665/genome.fa | |
| May-23 13:38:59.203 [main] INFO nextflow.Nextflow - gtf: /project/SCCC/DOrso_lab/s418665/genes.gtf | |
| May-23 13:38:59.203 [main] INFO nextflow.Nextflow - read-length: 75 | |
| May-23 13:38:59.203 [main] INFO nextflow.Nextflow - library: p | |
| May-23 13:38:59.203 [main] INFO nextflow.Nextflow - egs: 2451960000 | |
| May-23 13:38:59.203 [main] INFO nextflow.Nextflow - aligner: star | |
| May-23 13:38:59.203 [main] INFO nextflow.Nextflow - | |
| May-23 13:38:59.204 [main] INFO nextflow.Nextflow - subsample: false | |
| May-23 13:38:59.204 [main] INFO nextflow.Nextflow - | |
| May-23 13:38:59.204 [main] INFO nextflow.Nextflow - ********************************************** | |
| May-23 13:38:59.204 [main] INFO nextflow.Nextflow - | |
| May-23 13:38:59.389 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: slurm | |
| May-23 13:38:59.389 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'slurm' | |
| May-23 13:38:59.402 [main] DEBUG nextflow.executor.Executor - Initializing executor: slurm | |
| May-23 13:38:59.404 [main] INFO nextflow.executor.Executor - [warm up] executor > slurm | |
| May-23 13:38:59.411 [main] DEBUG n.processor.TaskPollingMonitor - Creating task monitor for executor 'slurm' > capacity: 100; pollInterval: 5s; dumpInterval: 5m | |
| May-23 13:38:59.413 [main] DEBUG nextflow.processor.TaskDispatcher - Starting monitor: TaskPollingMonitor | |
| May-23 13:38:59.414 [main] DEBUG n.processor.TaskPollingMonitor - >>> barrier register (monitor: slurm) | |
| May-23 13:38:59.416 [main] DEBUG nextflow.executor.Executor - Invoke register for executor: slurm | |
| May-23 13:38:59.417 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'slurm' > queue-stat-interval: 1m | |
| May-23 13:38:59.458 [main] DEBUG nextflow.Session - >>> barrier register (process: create_mapping_index) | |
| May-23 13:38:59.470 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > create_mapping_index -- maxForks: 40 | |
| May-23 13:38:59.494 [Actor Thread 1] DEBUG nextflow.processor.TaskProcessor - <create_mapping_index> Poison pill arrived | |
| May-23 13:38:59.496 [Actor Thread 3] DEBUG nextflow.processor.StateObj - <create_mapping_index> State before poison: StateObj[submitted: 1; completed: 0; poisoned: false ] | |
| May-23 13:38:59.505 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: slurm | |
| May-23 13:38:59.505 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'slurm' | |
| May-23 13:38:59.505 [main] DEBUG nextflow.executor.Executor - Initializing executor: slurm | |
| May-23 13:38:59.506 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'slurm' > queue-stat-interval: 1m | |
| May-23 13:38:59.506 [main] DEBUG nextflow.Session - >>> barrier register (process: fastqc_preTrim) | |
| May-23 13:38:59.515 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > fastqc_preTrim -- maxForks: 40 | |
| May-23 13:38:59.539 [Actor Thread 4] DEBUG nextflow.processor.TaskProcessor - <fastqc_preTrim> Poison pill arrived | |
| May-23 13:38:59.547 [Actor Thread 3] DEBUG nextflow.processor.StateObj - <fastqc_preTrim> State before poison: StateObj[submitted: 18; completed: 0; poisoned: false ] | |
| May-23 13:38:59.547 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: slurm | |
| May-23 13:38:59.547 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'slurm' | |
| May-23 13:38:59.547 [main] DEBUG nextflow.executor.Executor - Initializing executor: slurm | |
| May-23 13:38:59.548 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'slurm' > queue-stat-interval: 1m | |
| May-23 13:38:59.550 [main] DEBUG nextflow.Session - >>> barrier register (process: trimming) | |
| May-23 13:38:59.558 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > trimming -- maxForks: 40 | |
| May-23 13:40:46.456 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: slurm | |
| May-23 13:40:46.457 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'slurm' | |
| May-23 13:40:46.457 [main] DEBUG nextflow.executor.Executor - Initializing executor: slurm | |
| May-23 13:40:46.457 [Actor Thread 23] DEBUG nextflow.processor.TaskProcessor - <trimming> Poison pill arrived | |
| May-23 13:40:46.457 [Actor Thread 3] DEBUG nextflow.processor.StateObj - <trimming> State before poison: StateObj[submitted: 18; completed: 0; poisoned: false ] | |
| May-23 13:40:46.459 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'slurm' > queue-stat-interval: 1m | |
| May-23 13:40:46.469 [main] DEBUG nextflow.Session - >>> barrier register (process: fastqc_postTrim) | |
| May-23 13:40:46.486 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > fastqc_postTrim -- maxForks: 40 | |
| May-23 13:40:46.515 [main] WARN n.extension.DataflowExtensions - The use of `first` operator is unnecessary when applied to a value channel | |
| May-23 13:40:46.534 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: slurm | |
| May-23 13:40:46.534 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'slurm' | |
| May-23 13:40:46.534 [main] DEBUG nextflow.executor.Executor - Initializing executor: slurm | |
| May-23 13:40:46.535 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'slurm' > queue-stat-interval: 1m | |
| May-23 13:40:46.537 [main] DEBUG nextflow.Session - >>> barrier register (process: mapping) | |
| May-23 13:40:46.551 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > mapping -- maxForks: 40 | |
| May-23 13:40:46.561 [Actor Thread 12] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_preTrim (8) -- work folder: /project/SCCC/DOrso_lab/s418665/work/5a/9752f29b58cbebee5ef92115224ab2 | |
| May-23 13:40:46.573 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: slurm | |
| May-23 13:40:46.573 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'slurm' | |
| May-23 13:40:46.573 [main] DEBUG nextflow.executor.Executor - Initializing executor: slurm | |
| May-23 13:40:46.574 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'slurm' > queue-stat-interval: 1m | |
| May-23 13:40:46.575 [main] DEBUG nextflow.Session - >>> barrier register (process: create_fwd_coverage_tracks) | |
| May-23 13:40:46.584 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > create_fwd_coverage_tracks -- maxForks: 40 | |
| May-23 13:40:46.592 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: slurm | |
| May-23 13:40:46.592 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'slurm' | |
| May-23 13:40:46.592 [main] DEBUG nextflow.executor.Executor - Initializing executor: slurm | |
| May-23 13:40:46.593 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'slurm' > queue-stat-interval: 1m | |
| May-23 13:40:46.594 [main] DEBUG nextflow.Session - >>> barrier register (process: create_rev_coverage_tracks) | |
| May-23 13:40:46.604 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > create_rev_coverage_tracks -- maxForks: 40 | |
| May-23 13:40:46.615 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: slurm | |
| May-23 13:40:46.615 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'slurm' | |
| May-23 13:40:46.615 [main] DEBUG nextflow.executor.Executor - Initializing executor: slurm | |
| May-23 13:40:46.616 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'slurm' > queue-stat-interval: 1m | |
| May-23 13:40:46.618 [main] DEBUG nextflow.Session - >>> barrier register (process: featurecounts_frFirstStrand) | |
| May-23 13:40:46.628 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > featurecounts_frFirstStrand -- maxForks: 40 | |
| May-23 13:40:46.636 [main] DEBUG nextflow.script.ScriptRunner - > Await termination | |
| May-23 13:40:46.636 [main] DEBUG nextflow.Session - Session await | |
| May-23 13:40:46.665 [Actor Thread 19] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_preTrim (16) -- work folder: /project/SCCC/DOrso_lab/s418665/work/48/11d4ef74734cd9422b342a8e10bce9 | |
| May-23 13:40:46.666 [Actor Thread 12] INFO nextflow.Session - [5a/9752f2] Submitted process > fastqc_preTrim (8) | |
| May-23 13:40:46.690 [Actor Thread 31] DEBUG nextflow.executor.GridTaskHandler - Launching process > trimming (8) -- work folder: /project/SCCC/DOrso_lab/s418665/work/bf/8dbf28a9fa79f707585615506e14f5 | |
| May-23 13:40:46.690 [Actor Thread 19] INFO nextflow.Session - [48/11d4ef] Submitted process > fastqc_preTrim (16) | |
| May-23 13:40:46.712 [Actor Thread 31] INFO nextflow.Session - [bf/8dbf28] Submitted process > trimming (8) | |
| May-23 13:40:46.712 [Actor Thread 14] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_preTrim (10) -- work folder: /project/SCCC/DOrso_lab/s418665/work/e0/df23cb16ff92be3c5a4290b34fa2e9 | |
| May-23 13:40:46.734 [Actor Thread 18] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_preTrim (14) -- work folder: /project/SCCC/DOrso_lab/s418665/work/e9/14b5bb9223519e0bee2e7860c21926 | |
| May-23 13:40:46.734 [Actor Thread 14] INFO nextflow.Session - [e0/df23cb] Submitted process > fastqc_preTrim (10) | |
| May-23 13:40:46.755 [Actor Thread 11] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_preTrim (7) -- work folder: /project/SCCC/DOrso_lab/s418665/work/a9/26e1264af4dcc856ba9894fa5ed929 | |
| May-23 13:40:46.755 [Actor Thread 18] INFO nextflow.Session - [e9/14b5bb] Submitted process > fastqc_preTrim (14) | |
| May-23 13:40:46.775 [Actor Thread 5] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_preTrim (1) -- work folder: /project/SCCC/DOrso_lab/s418665/work/02/fcc919adba84b9191ae215681b73d6 | |
| May-23 13:40:46.775 [Actor Thread 11] INFO nextflow.Session - [a9/26e126] Submitted process > fastqc_preTrim (7) | |
| May-23 13:40:46.797 [Actor Thread 5] INFO nextflow.Session - [02/fcc919] Submitted process > fastqc_preTrim (1) | |
| May-23 13:40:46.797 [Actor Thread 6] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_preTrim (2) -- work folder: /project/SCCC/DOrso_lab/s418665/work/31/bba4bfe9360f16f6f1673993f5086d | |
| May-23 13:40:46.822 [Actor Thread 30] DEBUG nextflow.executor.GridTaskHandler - Launching process > trimming (7) -- work folder: /project/SCCC/DOrso_lab/s418665/work/c8/91840945439723b95e8249bd369202 | |
| May-23 13:40:46.822 [Actor Thread 6] INFO nextflow.Session - [31/bba4bf] Submitted process > fastqc_preTrim (2) | |
| May-23 13:40:46.843 [Actor Thread 7] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_preTrim (3) -- work folder: /project/SCCC/DOrso_lab/s418665/work/5b/546b860961965f0952948fb2558f46 | |
| May-23 13:40:46.843 [Actor Thread 30] INFO nextflow.Session - [c8/918409] Submitted process > trimming (7) | |
| May-23 13:40:46.866 [Actor Thread 28] DEBUG nextflow.executor.GridTaskHandler - Launching process > trimming (5) -- work folder: /project/SCCC/DOrso_lab/s418665/work/45/7b13ad97061b1ba1f2c3b62f7f5197 | |
| May-23 13:40:46.866 [Actor Thread 7] INFO nextflow.Session - [5b/546b86] Submitted process > fastqc_preTrim (3) | |
| May-23 13:40:46.888 [Actor Thread 17] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_preTrim (13) -- work folder: /project/SCCC/DOrso_lab/s418665/work/bf/24962db4b019212cff2ed55088b32c | |
| May-23 13:40:46.888 [Actor Thread 28] INFO nextflow.Session - [45/7b13ad] Submitted process > trimming (5) | |
| May-23 13:40:46.908 [Actor Thread 9] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_preTrim (5) -- work folder: /project/SCCC/DOrso_lab/s418665/work/24/d4ca5b3bf1c4e6bafeaf8f732059a5 | |
| May-23 13:40:46.908 [Actor Thread 17] INFO nextflow.Session - [bf/24962d] Submitted process > fastqc_preTrim (13) | |
| May-23 13:40:46.930 [Actor Thread 32] DEBUG nextflow.executor.GridTaskHandler - Launching process > trimming (9) -- work folder: /project/SCCC/DOrso_lab/s418665/work/8c/ed6576d2895da18b54b53b2c775391 | |
| May-23 13:40:46.930 [Actor Thread 9] INFO nextflow.Session - [24/d4ca5b] Submitted process > fastqc_preTrim (5) | |
| May-23 13:40:46.951 [Actor Thread 16] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_preTrim (12) -- work folder: /project/SCCC/DOrso_lab/s418665/work/90/d529aec4c9883d682b0bf379df4775 | |
| May-23 13:40:46.951 [Actor Thread 32] INFO nextflow.Session - [8c/ed6576] Submitted process > trimming (9) | |
| May-23 13:40:46.987 [Actor Thread 16] INFO nextflow.Session - [90/d529ae] Submitted process > fastqc_preTrim (12) | |
| May-23 13:40:46.988 [Actor Thread 27] DEBUG nextflow.executor.GridTaskHandler - Launching process > trimming (4) -- work folder: /project/SCCC/DOrso_lab/s418665/work/b9/997a4f8c3e8434b5bc63e4981a58af | |
| May-23 13:40:47.026 [Actor Thread 24] DEBUG nextflow.executor.GridTaskHandler - Launching process > trimming (1) -- work folder: /project/SCCC/DOrso_lab/s418665/work/1c/7ef4d1611617644281301159df2f63 | |
| May-23 13:40:47.026 [Actor Thread 27] INFO nextflow.Session - [b9/997a4f] Submitted process > trimming (4) | |
| May-23 13:40:47.046 [Actor Thread 34] DEBUG nextflow.executor.GridTaskHandler - Launching process > trimming (11) -- work folder: /project/SCCC/DOrso_lab/s418665/work/16/84655f53a630308e4848ee310e8a2b | |
| May-23 13:40:47.046 [Actor Thread 24] INFO nextflow.Session - [1c/7ef4d1] Submitted process > trimming (1) | |
| May-23 13:40:47.067 [Actor Thread 35] DEBUG nextflow.executor.GridTaskHandler - Launching process > trimming (12) -- work folder: /project/SCCC/DOrso_lab/s418665/work/d8/bc2a1639c4d83b5392afadf91d085a | |
| May-23 13:40:47.067 [Actor Thread 34] INFO nextflow.Session - [16/84655f] Submitted process > trimming (11) | |
| May-23 13:40:47.088 [Actor Thread 39] DEBUG nextflow.executor.GridTaskHandler - Launching process > trimming (16) -- work folder: /project/SCCC/DOrso_lab/s418665/work/29/a4c68aee372c4112a9652c8b487112 | |
| May-23 13:40:47.088 [Actor Thread 35] INFO nextflow.Session - [d8/bc2a16] Submitted process > trimming (12) | |
| May-23 13:40:47.111 [Actor Thread 15] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_preTrim (11) -- work folder: /project/SCCC/DOrso_lab/s418665/work/da/d59b88002eb69af4a3412761fc01f9 | |
| May-23 13:40:47.111 [Actor Thread 39] INFO nextflow.Session - [29/a4c68a] Submitted process > trimming (16) | |
| May-23 13:40:47.156 [Actor Thread 26] DEBUG nextflow.executor.GridTaskHandler - Launching process > trimming (3) -- work folder: /project/SCCC/DOrso_lab/s418665/work/95/1fe6c20060e4ff84cafcef0446c713 | |
| May-23 13:40:47.157 [Actor Thread 15] INFO nextflow.Session - [da/d59b88] Submitted process > fastqc_preTrim (11) | |
| May-23 13:40:47.177 [Actor Thread 8] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_preTrim (4) -- work folder: /project/SCCC/DOrso_lab/s418665/work/1e/9f739d325d5a135310e9ce7720e70e | |
| May-23 13:40:47.177 [Actor Thread 26] INFO nextflow.Session - [95/1fe6c2] Submitted process > trimming (3) | |
| May-23 13:40:47.211 [Actor Thread 29] DEBUG nextflow.executor.GridTaskHandler - Launching process > trimming (6) -- work folder: /project/SCCC/DOrso_lab/s418665/work/17/5f76eb90c974874ca0805acf44be6e | |
| May-23 13:40:47.211 [Actor Thread 8] INFO nextflow.Session - [1e/9f739d] Submitted process > fastqc_preTrim (4) | |
| May-23 13:40:47.234 [Actor Thread 20] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_preTrim (17) -- work folder: /project/SCCC/DOrso_lab/s418665/work/23/deda7c4171da508596b9216a9714c5 | |
| May-23 13:40:47.234 [Actor Thread 29] INFO nextflow.Session - [17/5f76eb] Submitted process > trimming (6) | |
| May-23 13:40:47.255 [Actor Thread 25] DEBUG nextflow.executor.GridTaskHandler - Launching process > trimming (2) -- work folder: /project/SCCC/DOrso_lab/s418665/work/6e/212fc28dcf8e473561793a74a3c8d3 | |
| May-23 13:40:47.255 [Actor Thread 20] INFO nextflow.Session - [23/deda7c] Submitted process > fastqc_preTrim (17) | |
| May-23 13:40:47.275 [Actor Thread 37] DEBUG nextflow.executor.GridTaskHandler - Launching process > trimming (14) -- work folder: /project/SCCC/DOrso_lab/s418665/work/70/4da9ecf45ca8f3f34230f5a070ed99 | |
| May-23 13:40:47.276 [Actor Thread 25] INFO nextflow.Session - [6e/212fc2] Submitted process > trimming (2) | |
| May-23 13:40:47.296 [Actor Thread 40] DEBUG nextflow.executor.GridTaskHandler - Launching process > trimming (17) -- work folder: /project/SCCC/DOrso_lab/s418665/work/4f/722279d3a8dbc100a1848a7827f525 | |
| May-23 13:40:47.297 [Actor Thread 37] INFO nextflow.Session - [70/4da9ec] Submitted process > trimming (14) | |
| May-23 13:40:47.318 [Actor Thread 36] DEBUG nextflow.executor.GridTaskHandler - Launching process > trimming (13) -- work folder: /project/SCCC/DOrso_lab/s418665/work/1b/6f0a1732e26c5da75a96c1394efae5 | |
| May-23 13:40:47.318 [Actor Thread 40] INFO nextflow.Session - [4f/722279] Submitted process > trimming (17) | |
| May-23 13:40:47.339 [Actor Thread 38] DEBUG nextflow.executor.GridTaskHandler - Launching process > trimming (15) -- work folder: /project/SCCC/DOrso_lab/s418665/work/09/889d92eb72f96a2cdcf28cd7643db6 | |
| May-23 13:40:47.339 [Actor Thread 36] INFO nextflow.Session - [1b/6f0a17] Submitted process > trimming (13) | |
| May-23 13:40:47.360 [Actor Thread 22] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_preTrim (15) -- work folder: /project/SCCC/DOrso_lab/s418665/work/92/77261d2f6a484255a783e5de6235f8 | |
| May-23 13:40:47.360 [Actor Thread 38] INFO nextflow.Session - [09/889d92] Submitted process > trimming (15) | |
| May-23 13:40:47.380 [Actor Thread 10] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_preTrim (6) -- work folder: /project/SCCC/DOrso_lab/s418665/work/43/a676f65ebee82453326c5fdc1ff87e | |
| May-23 13:40:47.380 [Actor Thread 22] INFO nextflow.Session - [92/77261d] Submitted process > fastqc_preTrim (15) | |
| May-23 13:40:47.401 [Actor Thread 21] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_preTrim (18) -- work folder: /project/SCCC/DOrso_lab/s418665/work/67/b09eeb49cd555a3c901a019e58fbe9 | |
| May-23 13:40:47.401 [Actor Thread 10] INFO nextflow.Session - [43/a676f6] Submitted process > fastqc_preTrim (6) | |
| May-23 13:40:47.445 [Actor Thread 21] INFO nextflow.Session - [67/b09eeb] Submitted process > fastqc_preTrim (18) | |
| May-23 13:40:47.445 [Actor Thread 33] DEBUG nextflow.executor.GridTaskHandler - Launching process > trimming (10) -- work folder: /project/SCCC/DOrso_lab/s418665/work/51/5f2ee1c8609581afc9a365748858fa | |
| May-23 13:40:47.465 [Actor Thread 33] INFO nextflow.Session - [51/5f2ee1] Submitted process > trimming (10) | |
| May-23 13:40:47.465 [Actor Thread 13] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_preTrim (9) -- work folder: /project/SCCC/DOrso_lab/s418665/work/ad/22e1840424e0f3c63dac8eb3c943f9 | |
| May-23 13:40:47.482 [Actor Thread 2] DEBUG nextflow.executor.GridTaskHandler - Launching process > create_mapping_index -- work folder: /project/SCCC/DOrso_lab/s418665/work/18/b6d883c2605927bdcb3185761a53c0 | |
| May-23 13:40:47.482 [Actor Thread 13] INFO nextflow.Session - [ad/22e184] Submitted process > fastqc_preTrim (9) | |
| May-23 13:40:47.483 [Actor Thread 4] DEBUG nextflow.processor.TaskProcessor - <fastqc_preTrim> After stop | |
| May-23 13:40:47.511 [Actor Thread 41] DEBUG nextflow.executor.GridTaskHandler - Launching process > trimming (18) -- work folder: /project/SCCC/DOrso_lab/s418665/work/5e/aa84f56299d538d66faad5b1b22922 | |
| May-23 13:40:47.511 [Actor Thread 2] INFO nextflow.Session - [18/b6d883] Submitted process > create_mapping_index | |
| May-23 13:40:47.511 [Actor Thread 1] DEBUG nextflow.processor.TaskProcessor - <create_mapping_index> After stop | |
| May-23 13:40:47.527 [Actor Thread 41] INFO nextflow.Session - [5e/aa84f5] Submitted process > trimming (18) | |
| May-23 13:40:47.528 [Actor Thread 23] DEBUG nextflow.processor.TaskProcessor - <trimming> After stop | |
| May-23 13:45:46.482 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 37 -- first: TaskHandler[jobId: 380600; id: 9; name: fastqc_preTrim (8); status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/5a/9752f29b58cbebee5ef92115224ab2 started: 1495564866475; exited: -; ] | |
| May-23 13:45:51.566 [Actor Thread 23] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_postTrim (1) -- work folder: /project/SCCC/DOrso_lab/s418665/work/3e/a278e40fa1a4b7818297e32bb98066 | |
| May-23 13:45:51.588 [Actor Thread 23] INFO nextflow.Session - [3e/a278e4] Submitted process > fastqc_postTrim (1) | |
| May-23 13:47:51.543 [Actor Thread 46] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_postTrim (2) -- work folder: /project/SCCC/DOrso_lab/s418665/work/3d/e4ba2aff5c567073ebc189962791ae | |
| May-23 13:47:51.562 [Actor Thread 46] INFO nextflow.Session - [3d/e4ba2a] Submitted process > fastqc_postTrim (2) | |
| May-23 13:48:26.536 [Actor Thread 48] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_postTrim (3) -- work folder: /project/SCCC/DOrso_lab/s418665/work/79/4f734c90a084a02084a8921f3bab5f | |
| May-23 13:48:26.556 [Actor Thread 48] INFO nextflow.Session - [79/4f734c] Submitted process > fastqc_postTrim (3) | |
| May-23 13:48:46.627 [Actor Thread 51] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_postTrim (4) -- work folder: /project/SCCC/DOrso_lab/s418665/work/6f/e90a521fc677257aab9e5b33b2d45a | |
| May-23 13:48:46.643 [Actor Thread 51] INFO nextflow.Session - [6f/e90a52] Submitted process > fastqc_postTrim (4) | |
| May-23 13:49:01.532 [Actor Thread 52] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_postTrim (5) -- work folder: /project/SCCC/DOrso_lab/s418665/work/32/9a135d1a0fa88c89cddb7614c98862 | |
| May-23 13:49:01.548 [Actor Thread 52] INFO nextflow.Session - [32/9a135d] Submitted process > fastqc_postTrim (5) | |
| May-23 13:49:51.519 [Actor Thread 53] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_postTrim (6) -- work folder: /project/SCCC/DOrso_lab/s418665/work/f2/24f1ec1f2da2a932aad2ea537e6240 | |
| May-23 13:49:51.536 [Actor Thread 53] INFO nextflow.Session - [f2/24f1ec] Submitted process > fastqc_postTrim (6) | |
| May-23 13:50:46.500 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 27 -- first: TaskHandler[jobId: 380612; id: 6; name: fastqc_preTrim (5); status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/24/d4ca5b3bf1c4e6bafeaf8f732059a5 started: 1495565046503; exited: -; ] | |
| May-23 13:52:16.563 [Actor Thread 58] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_postTrim (7) -- work folder: /project/SCCC/DOrso_lab/s418665/work/d7/38ce389bf79fd252f18496f63c1587 | |
| May-23 13:52:16.583 [Actor Thread 58] INFO nextflow.Session - [d7/38ce38] Submitted process > fastqc_postTrim (7) | |
| May-23 13:52:26.571 [Actor Thread 60] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_postTrim (8) -- work folder: /project/SCCC/DOrso_lab/s418665/work/fa/b1423fadd6d580ad8fcf6b6ef1db80 | |
| May-23 13:52:26.596 [Actor Thread 60] INFO nextflow.Session - [fa/b1423f] Submitted process > fastqc_postTrim (8) | |
| May-23 13:52:36.546 [Actor Thread 58] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_postTrim (9) -- work folder: /project/SCCC/DOrso_lab/s418665/work/5d/46141ba08a81e617f369809905e5c4 | |
| May-23 13:52:36.571 [Actor Thread 58] INFO nextflow.Session - [5d/46141b] Submitted process > fastqc_postTrim (9) | |
| May-23 13:53:11.539 [Actor Thread 62] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_postTrim (10) -- work folder: /project/SCCC/DOrso_lab/s418665/work/4e/bded6388171fef9b98f04d53aef956 | |
| May-23 13:53:11.574 [Actor Thread 62] INFO nextflow.Session - [4e/bded63] Submitted process > fastqc_postTrim (10) | |
| May-23 13:54:16.570 [Actor Thread 65] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_postTrim (11) -- work folder: /project/SCCC/DOrso_lab/s418665/work/c7/6a236b37a8897148ceed7ba55501ff | |
| May-23 13:54:16.596 [Actor Thread 65] INFO nextflow.Session - [c7/6a236b] Submitted process > fastqc_postTrim (11) | |
| May-23 13:54:26.545 [Actor Thread 62] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_postTrim (12) -- work folder: /project/SCCC/DOrso_lab/s418665/work/84/f6abc17203c721219a7caf8074c3d8 | |
| May-23 13:54:26.562 [Actor Thread 62] INFO nextflow.Session - [84/f6abc1] Submitted process > fastqc_postTrim (12) | |
| May-23 13:54:36.604 [Actor Thread 67] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_postTrim (13) -- work folder: /project/SCCC/DOrso_lab/s418665/work/f1/7f66fc5e98a2b90fa30366b525d970 | |
| May-23 13:54:36.628 [Actor Thread 67] INFO nextflow.Session - [f1/7f66fc] Submitted process > fastqc_postTrim (13) | |
| May-23 13:54:56.685 [Actor Thread 69] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_postTrim (14) -- work folder: /project/SCCC/DOrso_lab/s418665/work/93/16c9ea12111d04b83b8d4210ad259e | |
| May-23 13:54:56.776 [Actor Thread 69] INFO nextflow.Session - [93/16c9ea] Submitted process > fastqc_postTrim (14) | |
| May-23 13:55:06.540 [Actor Thread 67] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_postTrim (15) -- work folder: /project/SCCC/DOrso_lab/s418665/work/d3/717ac90cb5f7304a3ba766e0237470 | |
| May-23 13:55:06.572 [Actor Thread 67] INFO nextflow.Session - [d3/717ac9] Submitted process > fastqc_postTrim (15) | |
| May-23 13:55:31.587 [Actor Thread 72] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_postTrim (16) -- work folder: /project/SCCC/DOrso_lab/s418665/work/b4/b355cffd1c2580803e71f43f010a3a | |
| May-23 13:55:31.612 [Actor Thread 72] INFO nextflow.Session - [b4/b355cf] Submitted process > fastqc_postTrim (16) | |
| May-23 13:55:46.515 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 23 -- first: TaskHandler[jobId: 380630; id: 16; name: fastqc_preTrim (15); status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/92/77261d2f6a484255a783e5de6235f8 started: 1495565466507; exited: -; ] | |
| May-23 13:57:35.868 [Actor Thread 74] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_postTrim (17) -- work folder: /project/SCCC/DOrso_lab/s418665/work/11/f2fa6b7de37d16ab6488a9a53ec1ca | |
| May-23 13:57:35.888 [Actor Thread 74] INFO nextflow.Session - [11/f2fa6b] Submitted process > fastqc_postTrim (17) | |
| May-23 13:59:05.939 [Actor Thread 73] DEBUG nextflow.processor.TaskProcessor - <trimming> Sending poison pills and terminating process | |
| May-23 13:59:05.943 [Actor Thread 75] DEBUG nextflow.executor.GridTaskHandler - Launching process > fastqc_postTrim (18) -- work folder: /project/SCCC/DOrso_lab/s418665/work/56/48f3b27712de48299366a853fed78b | |
| May-23 13:59:05.949 [Actor Thread 74] DEBUG nextflow.processor.TaskProcessor - <fastqc_postTrim> Poison pill arrived | |
| May-23 13:59:05.950 [Actor Thread 73] DEBUG nextflow.Session - <<< barrier arrive (process: trimming) | |
| May-23 13:59:05.950 [Actor Thread 77] DEBUG nextflow.processor.StateObj - <fastqc_postTrim> State before poison: StateObj[submitted: 18; completed: 0; poisoned: false ] | |
| May-23 13:59:05.976 [Actor Thread 75] INFO nextflow.Session - [56/48f3b2] Submitted process > fastqc_postTrim (18) | |
| May-23 13:59:05.976 [Actor Thread 74] DEBUG nextflow.processor.TaskProcessor - <fastqc_postTrim> After stop | |
| May-23 13:59:35.926 [Actor Thread 78] DEBUG nextflow.processor.TaskProcessor - <fastqc_preTrim> Sending poison pills and terminating process | |
| May-23 13:59:35.927 [Actor Thread 78] DEBUG nextflow.Session - <<< barrier arrive (process: fastqc_preTrim) | |
| May-23 14:00:50.909 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 19 -- first: TaskHandler[jobId: 380635; id: 1; name: create_mapping_index; status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/18/b6d883c2605927bdcb3185761a53c0 started: 1495565586553; exited: -; ] | |
| May-23 14:05:53.641 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 7 -- first: TaskHandler[jobId: 380635; id: 1; name: create_mapping_index; status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/18/b6d883c2605927bdcb3185761a53c0 started: 1495565586553; exited: -; ] | |
| May-23 14:08:28.667 [Actor Thread 90] DEBUG nextflow.processor.TaskProcessor - <fastqc_postTrim> Sending poison pills and terminating process | |
| May-23 14:08:28.667 [Actor Thread 90] DEBUG nextflow.Session - <<< barrier arrive (process: fastqc_postTrim) | |
| May-23 14:10:53.648 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 1 -- first: TaskHandler[jobId: 380635; id: 1; name: create_mapping_index; status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/18/b6d883c2605927bdcb3185761a53c0 started: 1495565586553; exited: -; ] | |
| May-23 14:15:53.660 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 1 -- first: TaskHandler[jobId: 380635; id: 1; name: create_mapping_index; status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/18/b6d883c2605927bdcb3185761a53c0 started: 1495565586553; exited: -; ] | |
| May-23 14:20:53.688 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 1 -- first: TaskHandler[jobId: 380635; id: 1; name: create_mapping_index; status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/18/b6d883c2605927bdcb3185761a53c0 started: 1495565586553; exited: -; ] | |
| May-23 14:25:53.697 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 1 -- first: TaskHandler[jobId: 380635; id: 1; name: create_mapping_index; status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/18/b6d883c2605927bdcb3185761a53c0 started: 1495565586553; exited: -; ] | |
| May-23 14:30:53.705 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 1 -- first: TaskHandler[jobId: 380635; id: 1; name: create_mapping_index; status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/18/b6d883c2605927bdcb3185761a53c0 started: 1495565586553; exited: -; ] | |
| May-23 14:35:53.717 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 1 -- first: TaskHandler[jobId: 380635; id: 1; name: create_mapping_index; status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/18/b6d883c2605927bdcb3185761a53c0 started: 1495565586553; exited: -; ] | |
| May-23 14:40:53.734 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 1 -- first: TaskHandler[jobId: 380635; id: 1; name: create_mapping_index; status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/18/b6d883c2605927bdcb3185761a53c0 started: 1495565586553; exited: -; ] | |
| May-23 14:45:53.792 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 1 -- first: TaskHandler[jobId: 380635; id: 1; name: create_mapping_index; status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/18/b6d883c2605927bdcb3185761a53c0 started: 1495565586553; exited: -; ] | |
| May-23 14:50:53.796 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 1 -- first: TaskHandler[jobId: 380635; id: 1; name: create_mapping_index; status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/18/b6d883c2605927bdcb3185761a53c0 started: 1495565586553; exited: -; ] | |
| May-23 14:55:53.805 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 1 -- first: TaskHandler[jobId: 380635; id: 1; name: create_mapping_index; status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/18/b6d883c2605927bdcb3185761a53c0 started: 1495565586553; exited: -; ] | |
| May-23 15:00:53.823 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 1 -- first: TaskHandler[jobId: 380635; id: 1; name: create_mapping_index; status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/18/b6d883c2605927bdcb3185761a53c0 started: 1495565586553; exited: -; ] | |
| May-23 15:05:53.837 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 1 -- first: TaskHandler[jobId: 380635; id: 1; name: create_mapping_index; status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/18/b6d883c2605927bdcb3185761a53c0 started: 1495565586553; exited: -; ] | |
| May-23 15:10:53.852 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 1 -- first: TaskHandler[jobId: 380635; id: 1; name: create_mapping_index; status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/18/b6d883c2605927bdcb3185761a53c0 started: 1495565586553; exited: -; ] | |
| May-23 15:15:53.865 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 1 -- first: TaskHandler[jobId: 380635; id: 1; name: create_mapping_index; status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/18/b6d883c2605927bdcb3185761a53c0 started: 1495565586553; exited: -; ] | |
| May-23 15:20:53.877 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 1 -- first: TaskHandler[jobId: 380635; id: 1; name: create_mapping_index; status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/18/b6d883c2605927bdcb3185761a53c0 started: 1495565586553; exited: -; ] | |
| May-23 15:25:53.890 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 1 -- first: TaskHandler[jobId: 380635; id: 1; name: create_mapping_index; status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/18/b6d883c2605927bdcb3185761a53c0 started: 1495565586553; exited: -; ] | |
| May-23 15:30:53.904 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 1 -- first: TaskHandler[jobId: 380635; id: 1; name: create_mapping_index; status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/18/b6d883c2605927bdcb3185761a53c0 started: 1495565586553; exited: -; ] | |
| May-23 15:35:53.915 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 1 -- first: TaskHandler[jobId: 380635; id: 1; name: create_mapping_index; status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/18/b6d883c2605927bdcb3185761a53c0 started: 1495565586553; exited: -; ] | |
| May-23 15:37:03.959 [Actor Thread 93] DEBUG nextflow.processor.TaskProcessor - <create_mapping_index> Sending poison pills and terminating process | |
| May-23 15:37:03.981 [Actor Thread 93] DEBUG nextflow.Session - <<< barrier arrive (process: create_mapping_index) | |
| May-23 15:37:03.989 [Actor Thread 91] DEBUG nextflow.processor.TaskProcessor - <mapping> Poison pill arrived | |
| May-23 15:37:03.990 [Actor Thread 93] DEBUG nextflow.processor.StateObj - <mapping> State before poison: StateObj[submitted: 18; completed: 0; poisoned: false ] | |
| May-23 15:37:04.003 [Actor Thread 108] DEBUG nextflow.executor.GridTaskHandler - Launching process > mapping (16) -- work folder: /project/SCCC/DOrso_lab/s418665/work/20/15b0f491a52a556f6f3de5c99c96be | |
| May-23 15:37:04.028 [Actor Thread 101] DEBUG nextflow.executor.GridTaskHandler - Launching process > mapping (9) -- work folder: /project/SCCC/DOrso_lab/s418665/work/8d/ea27f81db3661ec326d6a02f1e9501 | |
| May-23 15:37:04.028 [Actor Thread 108] INFO nextflow.Session - [20/15b0f4] Submitted process > mapping (16) | |
| May-23 15:37:04.042 [Actor Thread 105] DEBUG nextflow.executor.GridTaskHandler - Launching process > mapping (13) -- work folder: /project/SCCC/DOrso_lab/s418665/work/fb/d023f9a4c0545b024bf128f3c06b68 | |
| May-23 15:37:04.042 [Actor Thread 101] INFO nextflow.Session - [8d/ea27f8] Submitted process > mapping (9) | |
| May-23 15:37:04.056 [Actor Thread 106] DEBUG nextflow.executor.GridTaskHandler - Launching process > mapping (14) -- work folder: /project/SCCC/DOrso_lab/s418665/work/f2/94789b8926843cd066ffee691dc87a | |
| May-23 15:37:04.056 [Actor Thread 105] INFO nextflow.Session - [fb/d023f9] Submitted process > mapping (13) | |
| May-23 15:37:04.069 [Actor Thread 97] DEBUG nextflow.executor.GridTaskHandler - Launching process > mapping (5) -- work folder: /project/SCCC/DOrso_lab/s418665/work/a8/a5f50fe15c5c00d2c9d2813b8fb690 | |
| May-23 15:37:04.069 [Actor Thread 106] INFO nextflow.Session - [f2/94789b] Submitted process > mapping (14) | |
| May-23 15:37:04.084 [Actor Thread 102] DEBUG nextflow.executor.GridTaskHandler - Launching process > mapping (10) -- work folder: /project/SCCC/DOrso_lab/s418665/work/69/3b98e4d7e3e07e9d80ba8b9b47ee3d | |
| May-23 15:37:04.084 [Actor Thread 97] INFO nextflow.Session - [a8/a5f50f] Submitted process > mapping (5) | |
| May-23 15:37:04.098 [Actor Thread 99] DEBUG nextflow.executor.GridTaskHandler - Launching process > mapping (7) -- work folder: /project/SCCC/DOrso_lab/s418665/work/c4/6a942ded348e2edd282400c7339627 | |
| May-23 15:37:04.098 [Actor Thread 102] INFO nextflow.Session - [69/3b98e4] Submitted process > mapping (10) | |
| May-23 15:37:04.112 [Actor Thread 96] DEBUG nextflow.executor.GridTaskHandler - Launching process > mapping (4) -- work folder: /project/SCCC/DOrso_lab/s418665/work/7d/a09eada61caa223a636a736b87ff5c | |
| May-23 15:37:04.112 [Actor Thread 99] INFO nextflow.Session - [c4/6a942d] Submitted process > mapping (7) | |
| May-23 15:37:04.126 [Actor Thread 104] DEBUG nextflow.executor.GridTaskHandler - Launching process > mapping (12) -- work folder: /project/SCCC/DOrso_lab/s418665/work/58/20fe79c52ed6c43f3db7715a398b24 | |
| May-23 15:37:04.126 [Actor Thread 96] INFO nextflow.Session - [7d/a09ead] Submitted process > mapping (4) | |
| May-23 15:37:04.140 [Actor Thread 109] DEBUG nextflow.executor.GridTaskHandler - Launching process > mapping (17) -- work folder: /project/SCCC/DOrso_lab/s418665/work/f4/f65d71939a244103b5e78bc2d6fba1 | |
| May-23 15:37:04.140 [Actor Thread 104] INFO nextflow.Session - [58/20fe79] Submitted process > mapping (12) | |
| May-23 15:37:04.153 [Actor Thread 98] DEBUG nextflow.executor.GridTaskHandler - Launching process > mapping (6) -- work folder: /project/SCCC/DOrso_lab/s418665/work/68/c61d5f1969fdb103931f9fa0d305d9 | |
| May-23 15:37:04.153 [Actor Thread 109] INFO nextflow.Session - [f4/f65d71] Submitted process > mapping (17) | |
| May-23 15:37:04.167 [Actor Thread 107] DEBUG nextflow.executor.GridTaskHandler - Launching process > mapping (15) -- work folder: /project/SCCC/DOrso_lab/s418665/work/81/80219b9e5898a91dc45d1b14de4680 | |
| May-23 15:37:04.167 [Actor Thread 98] INFO nextflow.Session - [68/c61d5f] Submitted process > mapping (6) | |
| May-23 15:37:04.181 [Actor Thread 110] DEBUG nextflow.executor.GridTaskHandler - Launching process > mapping (18) -- work folder: /project/SCCC/DOrso_lab/s418665/work/41/de1320302921d1c089069a223587fb | |
| May-23 15:37:04.181 [Actor Thread 107] INFO nextflow.Session - [81/80219b] Submitted process > mapping (15) | |
| May-23 15:37:04.194 [Actor Thread 95] DEBUG nextflow.executor.GridTaskHandler - Launching process > mapping (3) -- work folder: /project/SCCC/DOrso_lab/s418665/work/4b/95fca27f0672b9f80a38650992e04f | |
| May-23 15:37:04.194 [Actor Thread 110] INFO nextflow.Session - [41/de1320] Submitted process > mapping (18) | |
| May-23 15:37:04.208 [Actor Thread 95] INFO nextflow.Session - [4b/95fca2] Submitted process > mapping (3) | |
| May-23 15:37:04.208 [Actor Thread 103] DEBUG nextflow.executor.GridTaskHandler - Launching process > mapping (11) -- work folder: /project/SCCC/DOrso_lab/s418665/work/96/ff5f4c9c57da1fa089665d4c7509e5 | |
| May-23 15:37:04.222 [Actor Thread 103] INFO nextflow.Session - [96/ff5f4c] Submitted process > mapping (11) | |
| May-23 15:37:04.222 [Actor Thread 92] DEBUG nextflow.executor.GridTaskHandler - Launching process > mapping (2) -- work folder: /project/SCCC/DOrso_lab/s418665/work/48/eb69e94cdbaee1443f8012bcb3a4eb | |
| May-23 15:37:04.235 [Actor Thread 100] DEBUG nextflow.executor.GridTaskHandler - Launching process > mapping (8) -- work folder: /project/SCCC/DOrso_lab/s418665/work/0c/6f60c26968b82df54c320b9dbe52d4 | |
| May-23 15:37:04.235 [Actor Thread 92] INFO nextflow.Session - [48/eb69e9] Submitted process > mapping (2) | |
| May-23 15:37:04.249 [Actor Thread 74] DEBUG nextflow.executor.GridTaskHandler - Launching process > mapping (1) -- work folder: /project/SCCC/DOrso_lab/s418665/work/51/a7e5a64d9375cce78f2c41f897dad9 | |
| May-23 15:37:04.249 [Actor Thread 100] INFO nextflow.Session - [0c/6f60c2] Submitted process > mapping (8) | |
| May-23 15:37:04.263 [Actor Thread 74] INFO nextflow.Session - [51/a7e5a6] Submitted process > mapping (1) | |
| May-23 15:37:04.263 [Actor Thread 91] DEBUG nextflow.processor.TaskProcessor - <mapping> After stop | |
| May-23 15:40:53.931 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 18 -- first: TaskHandler[jobId: 380817; id: 71; name: mapping (16); status: SUBMITTED; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/20/15b0f491a52a556f6f3de5c99c96be started: -; exited: -; ] | |
| May-23 15:45:53.947 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 18 -- first: TaskHandler[jobId: 380817; id: 71; name: mapping (16); status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/20/15b0f491a52a556f6f3de5c99c96be started: 1495572133936; exited: -; ] | |
| May-23 15:50:53.955 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 18 -- first: TaskHandler[jobId: 380817; id: 71; name: mapping (16); status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/20/15b0f491a52a556f6f3de5c99c96be started: 1495572133936; exited: -; ] | |
| May-23 15:55:53.966 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 18 -- first: TaskHandler[jobId: 380817; id: 71; name: mapping (16); status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/20/15b0f491a52a556f6f3de5c99c96be started: 1495572133936; exited: -; ] | |
| May-23 16:00:53.982 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 18 -- first: TaskHandler[jobId: 380817; id: 71; name: mapping (16); status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/20/15b0f491a52a556f6f3de5c99c96be started: 1495572133936; exited: -; ] | |
| May-23 16:05:53.996 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 18 -- first: TaskHandler[jobId: 380817; id: 71; name: mapping (16); status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/20/15b0f491a52a556f6f3de5c99c96be started: 1495572133936; exited: -; ] | |
| May-23 16:10:54.044 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 18 -- first: TaskHandler[jobId: 380817; id: 71; name: mapping (16); status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/20/15b0f491a52a556f6f3de5c99c96be started: 1495572133936; exited: -; ] | |
| May-23 16:15:54.051 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 18 -- first: TaskHandler[jobId: 380817; id: 71; name: mapping (16); status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/20/15b0f491a52a556f6f3de5c99c96be started: 1495572133936; exited: -; ] | |
| May-23 16:20:54.083 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 18 -- first: TaskHandler[jobId: 380817; id: 71; name: mapping (16); status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/20/15b0f491a52a556f6f3de5c99c96be started: 1495572133936; exited: -; ] | |
| May-23 16:25:54.102 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 18 -- first: TaskHandler[jobId: 380817; id: 71; name: mapping (16); status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/20/15b0f491a52a556f6f3de5c99c96be started: 1495572133936; exited: -; ] | |
| May-23 16:30:54.134 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 18 -- first: TaskHandler[jobId: 380817; id: 71; name: mapping (16); status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/20/15b0f491a52a556f6f3de5c99c96be started: 1495572133936; exited: -; ] | |
| May-23 16:35:54.146 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 18 -- first: TaskHandler[jobId: 380817; id: 71; name: mapping (16); status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/20/15b0f491a52a556f6f3de5c99c96be started: 1495572133936; exited: -; ] | |
| May-23 16:40:54.160 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 18 -- first: TaskHandler[jobId: 380817; id: 71; name: mapping (16); status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/20/15b0f491a52a556f6f3de5c99c96be started: 1495572133936; exited: -; ] | |
| May-23 16:45:54.176 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 18 -- first: TaskHandler[jobId: 380817; id: 71; name: mapping (16); status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/20/15b0f491a52a556f6f3de5c99c96be started: 1495572133936; exited: -; ] | |
| May-23 16:46:09.315 [Actor Thread 91] DEBUG nextflow.executor.GridTaskHandler - Launching process > featurecounts_frFirstStrand (1) -- work folder: /project/SCCC/DOrso_lab/s418665/work/2f/59d196b03a0ff922434be2a08b162e | |
| May-23 16:46:09.342 [Actor Thread 91] INFO nextflow.Session - [2f/59d196] Submitted process > featurecounts_frFirstStrand (1) | |
| May-23 16:46:09.342 [Actor Thread 111] DEBUG nextflow.executor.GridTaskHandler - Launching process > create_fwd_coverage_tracks (1) -- work folder: /project/SCCC/DOrso_lab/s418665/work/be/ac41eafa38b8ce4e8361c848883f40 | |
| May-23 16:46:09.370 [Actor Thread 111] INFO nextflow.Session - [be/ac41ea] Submitted process > create_fwd_coverage_tracks (1) | |
| May-23 16:46:09.370 [Actor Thread 114] DEBUG nextflow.executor.GridTaskHandler - Launching process > create_rev_coverage_tracks (1) -- work folder: /project/SCCC/DOrso_lab/s418665/work/08/6e13c10c0d727f2b52d92972f65936 | |
| May-23 16:46:09.383 [Actor Thread 114] INFO nextflow.Session - [08/6e13c1] Submitted process > create_rev_coverage_tracks (1) | |
| May-23 16:50:54.182 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 20 -- first: TaskHandler[jobId: 380817; id: 71; name: mapping (16); status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/20/15b0f491a52a556f6f3de5c99c96be started: 1495572133936; exited: -; ] | |
| May-23 16:51:39.240 [Actor Thread 118] DEBUG nextflow.executor.GridTaskHandler - Launching process > create_fwd_coverage_tracks (2) -- work folder: /project/SCCC/DOrso_lab/s418665/work/39/b404c7e509eff31661bde98ec655a6 | |
| May-23 16:51:39.287 [Actor Thread 119] DEBUG nextflow.executor.GridTaskHandler - Launching process > create_rev_coverage_tracks (2) -- work folder: /project/SCCC/DOrso_lab/s418665/work/e5/a956131aa6e13aef2c065878064c21 | |
| May-23 16:51:39.287 [Actor Thread 118] INFO nextflow.Session - [39/b404c7] Submitted process > create_fwd_coverage_tracks (2) | |
| May-23 16:51:39.306 [Actor Thread 115] DEBUG nextflow.executor.GridTaskHandler - Launching process > featurecounts_frFirstStrand (2) -- work folder: /project/SCCC/DOrso_lab/s418665/work/5c/b67d626ad6ae6a6e4f73ecdadd6d83 | |
| May-23 16:51:39.306 [Actor Thread 119] INFO nextflow.Session - [e5/a95613] Submitted process > create_rev_coverage_tracks (2) | |
| May-23 16:51:39.323 [Actor Thread 115] INFO nextflow.Session - [5c/b67d62] Submitted process > featurecounts_frFirstStrand (2) | |
| May-23 16:55:54.197 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 22 -- first: TaskHandler[jobId: 380817; id: 71; name: mapping (16); status: RUNNING; exit: -; workDir: /project/SCCC/DOrso_lab/s418665/work/20/15b0f491a52a556f6f3de5c99c96be started: 1495572133936; exited: -; ] | |
| May-23 16:57:39.277 [Actor Thread 123] DEBUG nextflow.executor.GridTaskHandler - Launching process > create_fwd_coverage_tracks (3) -- work folder: /project/SCCC/DOrso_lab/s418665/work/cc/ebe754773d44fb7a6a39b0403f35be | |
| May-23 16:57:39.313 [Actor Thread 125] DEBUG nextflow.executor.GridTaskHandler - Launching process > create_rev_coverage_tracks (3) -- work folder: /project/SCCC/DOrso_lab/s418665/work/9f/703f86cb378401d390bb9dcd855e19 | |
| May-23 16:57:39.313 [Actor Thread 123] INFO nextflow.Session - [cc/ebe754] Submitted process > create_fwd_coverage_tracks (3) | |
| May-23 16:57:39.327 [Actor Thread 121] DEBUG nextflow.executor.GridTaskHandler - Launching process > featurecounts_frFirstStrand (3) -- work folder: /project/SCCC/DOrso_lab/s418665/work/89/0aa965cf64d320aa109e834c372062 | |
| May-23 16:57:39.327 [Actor Thread 125] INFO nextflow.Session - [9f/703f86] Submitted process > create_rev_coverage_tracks (3) | |
| May-23 16:57:39.342 [Actor Thread 121] INFO nextflow.Session - [89/0aa965] Submitted process > featurecounts_frFirstStrand (3) | |
| May-23 16:58:54.259 [Actor Thread 128] DEBUG nextflow.executor.GridTaskHandler - Launching process > create_fwd_coverage_tracks (4) -- work folder: /project/SCCC/DOrso_lab/s418665/work/bd/91c220c65120ceb45d5a8f3b3a3aa1 | |
| May-23 16:58:54.314 [Actor Thread 128] INFO nextflow.Session - [bd/91c220] Submitted process > create_fwd_coverage_tracks (4) | |
| May-23 16:58:54.314 [Actor Thread 126] DEBUG nextflow.executor.GridTaskHandler - Launching process > featurecounts_frFirstStrand (4) -- work folder: /project/SCCC/DOrso_lab/s418665/work/ab/f1951639125e9641c9d3c90c5a067d | |
| May-23 16:58:54.329 [Actor Thread 130] DEBUG nextflow.executor.GridTaskHandler - Launching process > create_rev_coverage_tracks (4) -- work folder: /project/SCCC/DOrso_lab/s418665/work/86/b3e07f4afc8bee06e48208899ce268 | |
| May-23 16:58:54.329 [Actor Thread 126] INFO nextflow.Session - [ab/f19516] Submitted process > featurecounts_frFirstStrand (4) | |
| May-23 16:58:54.343 [Actor Thread 130] INFO nextflow.Session - [86/b3e07f] Submitted process > create_rev_coverage_tracks (4) | |
| May-23 17:00:39.387 [Actor Thread 133] DEBUG nextflow.executor.GridTaskHandler - Launching process > create_fwd_coverage_tracks (5) -- work folder: /project/SCCC/DOrso_lab/s418665/work/70/4cd9af958bab45d5a28e541067a2ea |
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| # | |
| # A fatal error has been detected by the Java Runtime Environment: | |
| # | |
| # SIGBUS (0x7) at pc=0x0000003af2283947, pid=76395, tid=46912883504896 | |
| # | |
| # JRE version: Java(TM) SE Runtime Environment (7.0_51-b13) (build 1.7.0_51-b13) | |
| # Java VM: Java HotSpot(TM) 64-Bit Server VM (24.51-b03 mixed mode linux-amd64 compressed oops) | |
| # Problematic frame: | |
| # C [libc.so.6+0x83947] memmove+0xa7 | |
| # | |
| # Failed to write core dump. Core dumps have been disabled. To enable core dumping, try "ulimit -c unlimited" before starting Java again | |
| # | |
| # If you would like to submit a bug report, please visit: | |
| # http://bugreport.sun.com/bugreport/crash.jsp | |
| # | |
| --------------- T H R E A D --------------- | |
| Current thread (0x00002aac14014000): JavaThread "Actor Thread 135" daemon [_thread_in_vm, id=74120, stack(0x00002aaac1b1b000,0x00002aaac1c1c000)] | |
| siginfo:si_signo=SIGBUS: si_errno=0, si_code=2 (BUS_ADRERR), si_addr=0x00002aabf315c652 | |
| Registers: | |
| RAX=0x0000000000000007, RBX=0x000000059ab96701, RCX=0x00002aabf315c652, RDX=0x00000000000000f1 | |
| RSP=0x00002aaac1c199b0, RBP=0x00002aabf315c652, RSI=0x000000059ab96700, RDI=0x00002aabf315c652 | |
| R8 =0x0000000000000000, R9 =0x00002aabf315c652, R10=0x00002aaab088bcac, R11=0x00002aaaab587d30 | |
| R12=0x00002aabf315c652, R13=0x0000000000000000, R14=0x00002aabf315c652, R15=0x0000000000000010 | |
| RIP=0x0000003af2283947, EFLAGS=0x0000000000010202, CSGSFS=0x0000000000000033, ERR=0x0000000000000006 | |
| TRAPNO=0x000000000000000e | |
| Top of Stack: (sp=0x00002aaac1c199b0) | |
| 0x00002aaac1c199b0: 0000000000000000 00002aac14014000 | |
| 0x00002aaac1c199c0: 00002aaac1c19a30 00002aaac1c19b20 | |
| 0x00002aaac1c199d0: 0000000000000000 00002aaaab64c132 | |
| 0x00002aaac1c199e0: 00002aac14014000 000000059ab95d10 | |
| 0x00002aaac1c199f0: 00002aac14014000 000000059ab961e8 | |
| 0x00002aaac1c19a00: 00000000000003d2 00000000800ea120 | |
| 0x00002aaac1c19a10: 0000000000000000 00000000800ea120 | |
| 0x00002aaac1c19a20: 00002aaac1c19b28 00002aac14014000 | |
| 0x00002aaac1c19a30: 00002aaac1c19ac8 00002aaab088bcd8 | |
| 0x00002aaac1c19a40: 0000000000000007 00000000000003d2 | |
| 0x00002aaac1c19a50: 0000000000000020 000000059ab961e8 | |
| 0x00002aaac1c19a60: 0000000000000000 00002aac1400dd40 | |
| 0x00002aaac1c19a70: 00002aac14014000 0000000000000000 | |
| 0x00002aaac1c19a80: 0000000000000001 00002aaac1c19a88 | |
| 0x00002aaac1c19a90: 0000000000000000 00002aaac1c19b28 | |
| 0x00002aaac1c19aa0: 00000000800ecd50 0000000000000000 | |
| 0x00002aaac1c19ab0: 00000000800ea120 0000000000000000 | |
| 0x00002aaac1c19ac0: 00002aaac1c19ae8 00002aaac1c19b70 | |
| 0x00002aaac1c19ad0: 00002aaab087f058 0000000000000000 | |
| 0x00002aaac1c19ae0: 00002aaab0887cd8 0000000000000007 | |
| 0x00002aaac1c19af0: ffffffffffffffff 00002aabf315c652 | |
| 0x00002aaac1c19b00: 00002aac14014000 0000000000000000 | |
| 0x00002aaac1c19b10: 0000000000000010 00002aaaab2949de | |
| 0x00002aaac1c19b20: 000000059ab966f0 00000005a13d0278 | |
| 0x00002aaac1c19b30: 00002aaac1c19b30 000000008017768a | |
| 0x00002aaac1c19b40: 00002aaac1c19be0 0000000080178510 | |
| 0x00002aaac1c19b50: 0000000000000000 00000000801776b8 | |
| 0x00002aaac1c19b60: 00002aaac1c19ae8 00002aaac1c19ba0 | |
| 0x00002aaac1c19b70: 00002aaac1c19c28 00002aaab087f058 | |
| 0x00002aaac1c19b80: 0000000000000007 0000000000000000 | |
| 0x00002aaac1c19b90: 0000000000000010 0000000000000000 | |
| 0x00002aaac1c19ba0: 0000000000000007 0000000000000007 | |
| Instructions: (pc=0x0000003af2283947) | |
| 0x0000003af2283927: c3 48 01 c5 4c 89 e8 83 e0 07 48 85 c0 74 1e 66 | |
| 0x0000003af2283937: 2e 0f 1f 84 00 00 00 00 00 0f b6 13 48 83 c3 01 | |
| 0x0000003af2283947: 88 55 00 48 83 c5 01 48 83 e8 01 75 ec 48 83 c4 | |
| 0x0000003af2283957: 08 4c 89 e0 5b 5d 41 5c 41 5d c3 66 0f 1f 44 00 | |
| Register to memory mapping: | |
| RAX=0x0000000000000007 is an unknown value | |
| RBX=0x000000059ab96701 is an unknown value | |
| RCX=0x00002aabf315c652 is an unknown value | |
| RDX=0x00000000000000f1 is an unknown value | |
| RSP=0x00002aaac1c199b0 is pointing into the stack for thread: 0x00002aac14014000 | |
| RBP=0x00002aabf315c652 is an unknown value | |
| RSI=0x000000059ab96700 is an unknown value | |
| RDI=0x00002aabf315c652 is an unknown value | |
| R8 =0x0000000000000000 is an unknown value | |
| R9 =0x00002aabf315c652 is an unknown value | |
| R10=0x00002aaab088bcac is at code_begin+620 in an Interpreter codelet | |
| method entry point (kind = native) [0x00002aaab088ba40, 0x00002aaab088c2a0] 2144 bytes | |
| R11=0x00002aaaab587d30: <offset 0x8a7d30> in /cm/shared/apps/java/oracle/jdk1.7.0_51/jre/lib/amd64/server/libjvm.so at 0x00002aaaaace0000 | |
| R12=0x00002aabf315c652 is an unknown value | |
| R13=0x0000000000000000 is an unknown value | |
| R14=0x00002aabf315c652 is an unknown value | |
| R15=0x0000000000000010 is an unknown value | |
| Stack: [0x00002aaac1b1b000,0x00002aaac1c1c000], sp=0x00002aaac1c199b0, free space=1018k | |
| Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native code) | |
| C [libc.so.6+0x83947] memmove+0xa7 | |
| Java frames: (J=compiled Java code, j=interpreted, Vv=VM code) | |
| j sun.misc.Unsafe.copyMemory(Ljava/lang/Object;JLjava/lang/Object;JJ)V+0 | |
| j java.nio.Bits.copyFromArray(Ljava/lang/Object;JJJJ)V+42 | |
| j java.nio.DirectByteBuffer.put([BII)Ljava/nio/ByteBuffer;+98 | |
| j org.iq80.leveldb.util.Slice.getBytes(ILjava/nio/ByteBuffer;)V+33 | |
| j org.iq80.leveldb.impl.MMapLogWriter.writeChunk(Lorg/iq80/leveldb/impl/LogChunkType;Lorg/iq80/leveldb/util/Slice;)V+79 | |
| j org.iq80.leveldb.impl.MMapLogWriter.addRecord(Lorg/iq80/leveldb/util/Slice;Z)V+200 | |
| j org.iq80.leveldb.impl.DbImpl.writeInternal(Lorg/iq80/leveldb/impl/WriteBatchImpl;Lorg/iq80/leveldb/WriteOptions;)Lorg/iq80/leveldb/Snapshot;+72 | |
| j org.iq80.leveldb.impl.DbImpl.put([B[BLorg/iq80/leveldb/WriteOptions;)Lorg/iq80/leveldb/Snapshot;+14 | |
| j org.iq80.leveldb.impl.DbImpl.put([B[B)V+10 | |
| j nextflow.CacheDB.writeTaskEntry0(Lnextflow/processor/TaskHandler;)V+179 | |
| j sun.reflect.GeneratedMethodAccessor717.invoke(Ljava/lang/Object;[Ljava/lang/Object;)Ljava/lang/Object;+40 | |
| J org.codehaus.groovy.reflection.CachedMethod.invoke(Ljava/lang/Object;[Ljava/lang/Object;)Ljava/lang/Object; | |
| j groovy.lang.MetaMethod.doMethodInvoke(Ljava/lang/Object;[Ljava/lang/Object;)Ljava/lang/Object;+9 | |
| j groovy.lang.MetaClassImpl.invokeMethod(Ljava/lang/Class;Ljava/lang/Object;Ljava/lang/String;[Ljava/lang/Object;ZZ)Ljava/lang/Object;+1071 | |
| j groovy.lang.MetaClassImpl.invokeMethod(Ljava/lang/Object;Ljava/lang/String;[Ljava/lang/Object;)Ljava/lang/Object;+10 | |
| J org.codehaus.groovy.runtime.InvokerHelper.invokeMethod(Ljava/lang/Object;Ljava/lang/String;Ljava/lang/Object;)Ljava/lang/Object; | |
| j org.codehaus.groovy.runtime.InvokerHelper.invokeMethodSafe(Ljava/lang/Object;Ljava/lang/String;Ljava/lang/Object;)Ljava/lang/Object;+7 | |
| j nextflow.CacheDB$_putTaskAsync_closure1.doCall(Ljava/lang/Object;)Ljava/lang/Object;+23 | |
| j nextflow.CacheDB$_putTaskAsync_closure1.call(Ljava/lang/Object;)Ljava/lang/Object;+2 | |
| j groovyx.gpars.agent.AgentBase.onMessage(Lgroovy/lang/Closure;)V+45 | |
| j groovyx.gpars.agent.Agent.handleMessage(Ljava/lang/Object;)V+12 | |
| j groovyx.gpars.agent.AgentCore$1.handleMessage(Ljava/lang/Object;)V+5 | |
| j groovyx.gpars.util.AsyncMessagingCore.run()V+51 | |
| j java.util.concurrent.ThreadPoolExecutor.runWorker(Ljava/util/concurrent/ThreadPoolExecutor$Worker;)V+95 | |
| j java.util.concurrent.ThreadPoolExecutor$Worker.run()V+5 | |
| j java.lang.Thread.run()V+11 | |
| v ~StubRoutines::call_stub | |
| --------------- P R O C E S S --------------- | |
| Java Threads: ( => current thread ) | |
| =>0x00002aac14014000 JavaThread "Actor Thread 135" daemon [_thread_in_vm, id=74120, stack(0x00002aaac1b1b000,0x00002aaac1c1c000)] | |
| 0x00002aac14013800 JavaThread "pool-3-thread-12" [_thread_in_native, id=74119, stack(0x00002aaac1111000,0x00002aaac1212000)] | |
| 0x00002aacac00b800 JavaThread "Actor Thread 134" daemon [_thread_blocked, id=74118, stack(0x00002aaabba65000,0x00002aaabbb66000)] | |
| 0x00002aac68007800 JavaThread "Actor Thread 133" daemon [_thread_in_native, id=74117, stack(0x00002aaabbc67000,0x00002aaabbd68000)] | |
| 0x00002aac14013000 JavaThread "Actor Thread 132" daemon [_thread_blocked, id=74116, stack(0x00002aaabbd68000,0x00002aaabbe69000)] | |
| 0x00002aac14006800 JavaThread "Actor Thread 131" daemon [_thread_blocked, id=74115, stack(0x00002aaac2323000,0x00002aaac2424000)] | |
| 0x00002aac14003800 JavaThread "process reaper" daemon [_thread_in_native, id=72882, stack(0x00002aaabbf6a000,0x00002aaabbfa3000)] | |
| 0x00002aacac00c800 JavaThread "Actor Thread 130" daemon [_thread_blocked, id=70624, stack(0x00002aaac1313000,0x00002aaac1414000)] | |
| 0x00002aac14016000 JavaThread "Actor Thread 120" daemon [_thread_blocked, id=55614, stack(0x00002aaac1d1d000,0x00002aaac1e1e000)] | |
| 0x00002aaaac89f800 JavaThread "Thread-1" [_thread_blocked, id=77044, stack(0x00002aaabbb66000,0x00002aaabbc67000)] | |
| 0x00002aaaac0ce000 JavaThread "Service Thread" daemon [_thread_blocked, id=76971, stack(0x00002aabf2194000,0x00002aabf2295000)] | |
| 0x00002aaaac0cb800 JavaThread "C2 CompilerThread1" daemon [_thread_blocked, id=76970, stack(0x00002aabf2093000,0x00002aabf2194000)] | |
| 0x00002aaaac0c9000 JavaThread "C2 CompilerThread0" daemon [_thread_blocked, id=76969, stack(0x00002aabf1f92000,0x00002aabf2093000)] | |
| 0x00002aaaac0be800 JavaThread "Signal Dispatcher" daemon [_thread_blocked, id=76968, stack(0x00002aabf1e91000,0x00002aabf1f92000)] | |
| 0x00002aaaac0a7000 JavaThread "Finalizer" daemon [_thread_blocked, id=76967, stack(0x00002aabdde6f000,0x00002aabddf70000)] | |
| 0x00002aaaac0a3000 JavaThread "Reference Handler" daemon [_thread_blocked, id=76966, stack(0x00002aabddd6e000,0x00002aabdde6f000)] | |
| 0x00002aaaac00d000 JavaThread "main" [_thread_blocked, id=76935, stack(0x00002aaaabb46000,0x00002aaaabc47000)] | |
| Other Threads: | |
| 0x00002aaaac0a1000 VMThread [stack: 0x00002aabddc6d000,0x00002aabddd6e000] [id=76965] | |
| 0x00002aaaac0e1000 WatcherThread [stack: 0x00002aabf2295000,0x00002aabf2396000] [id=76972] | |
| VM state:synchronizing (normal execution) | |
| VM Mutex/Monitor currently owned by a thread: ([mutex/lock_event]) | |
| [0x00002aaaac00a070] Threads_lock - owner thread: 0x00002aaaac0a1000 | |
| Heap | |
| PSYoungGen total 602112K, used 443618K [0x0000000581b00000, 0x00000005cb300000, 0x0000000800000000) | |
| eden space 516096K, 79% used [0x0000000581b00000,0x000000059abd62c8,0x00000005a1300000) | |
| from space 86016K, 38% used [0x00000005a1300000,0x00000005a3362600,0x00000005a6700000) | |
| to space 86016K, 0% used [0x00000005c5f00000,0x00000005c5f00000,0x00000005cb300000) | |
| ParOldGen total 1375232K, used 8K [0x0000000085200000, 0x00000000d9100000, 0x0000000581b00000) | |
| object space 1375232K, 0% used [0x0000000085200000,0x0000000085202000,0x00000000d9100000) | |
| PSPermGen total 25600K, used 25357K [0x0000000080000000, 0x0000000081900000, 0x0000000085200000) | |
| object space 25600K, 99% used [0x0000000080000000,0x00000000818c37a0,0x0000000081900000) | |
| Card table byte_map: [0x00002aaab3939000,0x00002aaab753a000] byte_map_base: 0x00002aaab3539000 | |
| Polling page: 0x00002aaab022b000 | |
| Code Cache [0x00002aaab0879000, 0x00002aaab0bd9000, 0x00002aaab3879000) | |
| total_blobs=1314 nmethods=753 adapters=512 free_code_cache=45792Kb largest_free_block=46844992 | |
| Compilation events (10 events): | |
| Event: 11404.346 Thread 0x00002aaaac0cb800 807 sun.reflect.UnsafeObjectFieldAccessorImpl::get (17 bytes) | |
| Event: 11404.353 Thread 0x00002aaaac0cb800 nmethod 807 0x00002aaab0ba6850 code [0x00002aaab0ba69a0, 0x00002aaab0ba6ae8] | |
| Event: 11539.366 Thread 0x00002aaaac0c9000 808 ! org.slf4j.Logger$isTraceEnabled$3::call (34 bytes) | |
| Event: 11539.389 Thread 0x00002aaaac0c9000 nmethod 808 0x00002aaab0bb1110 code [0x00002aaab0bb12e0, 0x00002aaab0bb16d8] | |
| Event: 11804.363 Thread 0x00002aaaac0cb800 809 org.codehaus.groovy.runtime.dgmimpl.NumberNumberMultiply::invoke (14 bytes) | |
| Event: 11804.393 Thread 0x00002aaaac0cb800 nmethod 809 0x00002aaab0bb0cd0 code [0x00002aaab0bb0e40, 0x00002aaab0bb0f68] | |
| Event: 11919.397 Thread 0x00002aaaac0c9000 810 ! nextflow.executor.AbstractGridExecutor$checkActiveStatus$4::call (38 bytes) | |
| Event: 11919.457 Thread 0x00002aaaac0c9000 nmethod 810 0x00002aaab0bc79d0 code [0x00002aaab0bc7e60, 0x00002aaab0bc9548] | |
| Event: 11924.444 Thread 0x00002aaaac0cb800 811 java.util.regex.Matcher::appendReplacement (535 bytes) | |
| Event: 11924.458 Thread 0x00002aaaac0cb800 nmethod 811 0x00002aaab0bacad0 code [0x00002aaab0bacdc0, 0x00002aaab0bad930] | |
| GC Heap History (2 events): | |
| Event: 4.737 GC heap before | |
| {Heap before GC invocations=1 (full 0): | |
| PSYoungGen total 602112K, used 516096K [0x0000000581b00000, 0x00000005abb00000, 0x0000000800000000) | |
| eden space 516096K, 100% used [0x0000000581b00000,0x00000005a1300000,0x00000005a1300000) | |
| from space 86016K, 0% used [0x00000005a6700000,0x00000005a6700000,0x00000005abb00000) | |
| to space 86016K, 0% used [0x00000005a1300000,0x00000005a1300000,0x00000005a6700000) | |
| ParOldGen total 1375232K, used 0K [0x0000000085200000, 0x00000000d9100000, 0x0000000581b00000) | |
| object space 1375232K, 0% used [0x0000000085200000,0x0000000085200000,0x00000000d9100000) | |
| PSPermGen total 22016K, used 21674K [0x0000000080000000, 0x0000000081580000, 0x0000000085200000) | |
| object space 22016K, 98% used [0x0000000080000000,0x000000008152a818,0x0000000081580000) | |
| Event: 111.616 GC heap after | |
| Heap after GC invocations=1 (full 0): | |
| PSYoungGen total 602112K, used 33161K [0x0000000581b00000, 0x00000005cb300000, 0x0000000800000000) | |
| eden space 516096K, 0% used [0x0000000581b00000,0x0000000581b00000,0x00000005a1300000) | |
| from space 86016K, 38% used [0x00000005a1300000,0x00000005a3362600,0x00000005a6700000) | |
| to space 86016K, 0% used [0x00000005c5f00000,0x00000005c5f00000,0x00000005cb300000) | |
| ParOldGen total 1375232K, used 8K [0x0000000085200000, 0x00000000d9100000, 0x0000000581b00000) | |
| object space 1375232K, 0% used [0x0000000085200000,0x0000000085202000,0x00000000d9100000) | |
| PSPermGen total 22016K, used 21674K [0x0000000080000000, 0x0000000081580000, 0x0000000085200000) | |
| object space 22016K, 98% used [0x0000000080000000,0x000000008152a818,0x0000000081580000) | |
| } | |
| Deoptimization events (10 events): | |
| Event: 416.715 Thread 0x00002aaaac89f800 Uncommon trap: reason=unreached action=reinterpret pc=0x00002aaab0a27cb8 method=org.codehaus.groovy.runtime.ScriptBytecodeAdapter.compareEqual(Ljava/lang/Object;Ljava/lang/Object;)Z @ 44 | |
| Event: 416.715 Thread 0x00002aaaac89f800 Uncommon trap: reason=predicate action=maybe_recompile pc=0x00002aaab0a2ba44 method=java.util.ArrayList.indexOf(Ljava/lang/Object;)I @ 44 | |
| Event: 416.728 Thread 0x00002aaaac89f800 Uncommon trap: reason=unreached action=reinterpret pc=0x00002aaab0b15478 method=org.codehaus.groovy.runtime.metaclass.MetaMethodIndex.getMethods(Ljava/lang/Class;Ljava/lang/String;)Lorg/codehaus/groovy/runtime/metaclass/MetaMethodIndex$Entry; @ 61 | |
| Event: 416.806 Thread 0x00002aac0c006000 Uncommon trap: reason=unreached action=reinterpret pc=0x00002aaab0b060a0 method=groovyjarjarasm.asm.Type.a(Ljava/lang/StringBuffer;Ljava/lang/Class;)V @ 52 | |
| Event: 711.661 Thread 0x00002aaaac89f800 Uncommon trap: reason=bimorphic action=maybe_recompile pc=0x00002aaab0b75580 method=java.lang.AbstractStringBuilder.append(Ljava/lang/CharSequence;II)Ljava/lang/AbstractStringBuilder; @ 18 | |
| Event: 711.661 Thread 0x00002aaaac89f800 Uncommon trap: reason=bimorphic action=maybe_recompile pc=0x00002aaab0b75580 method=java.lang.AbstractStringBuilder.append(Ljava/lang/CharSequence;II)Ljava/lang/AbstractStringBuilder; @ 18 | |
| Event: 7089.129 Thread 0x00002aac14013000 Uncommon trap: reason=unloaded action=reinterpret pc=0x00002aaab0add7f0 method=org.codehaus.groovy.reflection.CachedMethod.invoke(Ljava/lang/Object;[Ljava/lang/Object;)Ljava/lang/Object; @ 30 | |
| Event: 7089.131 Thread 0x00002aacac005800 Uncommon trap: reason=unreached action=reinterpret pc=0x00002aaab0b24008 method=org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(Ljava/lang/Object;Ljava/lang/Object;)Ljava/lang/Object; @ 15 | |
| Event: 11299.472 Thread 0x00002aaaac89f800 Uncommon trap: reason=null_check action=make_not_entrant pc=0x00002aaab0bba824 method=nextflow.executor.GridTaskHandler.readExitStatus()Ljava/lang/Integer; @ 1544 | |
| Event: 12004.525 Thread 0x00002aaaac89f800 Uncommon trap: reason=null_check action=make_not_entrant pc=0x00002aaab0bc8f2c method=nextflow.executor.AbstractGridExecutor.checkActiveStatus(Ljava/lang/Object;Ljava/lang/Object;)Z @ 33 | |
| Internal exceptions (10 events): | |
| Event: 12104.550 Thread 0x00002aac68007800 Threw 0x000000059a9a1760 at /HUDSON/workspace/7u-2-build-linux-amd64@2/jdk7u51/527/hotspot/src/share/vm/prims/jni.cpp:717 | |
| Event: 12104.551 Thread 0x00002aaaac89f800 Threw 0x000000059a503f00 at /HUDSON/workspace/7u-2-build-linux-amd64@2/jdk7u51/527/hotspot/src/share/vm/prims/jni.cpp:717 | |
| Event: 12104.551 Thread 0x00002aacac00c800 Threw 0x000000059a2a4538 at /HUDSON/workspace/7u-2-build-linux-amd64@2/jdk7u51/527/hotspot/src/share/vm/prims/jni.cpp:717 | |
| Event: 12104.551 Thread 0x00002aaaac89f800 Threw 0x000000059a504760 at /HUDSON/workspace/7u-2-build-linux-amd64@2/jdk7u51/527/hotspot/src/share/vm/prims/jni.cpp:717 | |
| Event: 12104.551 Thread 0x00002aaaac89f800 Threw 0x000000059a504fc0 at /HUDSON/workspace/7u-2-build-linux-amd64@2/jdk7u51/527/hotspot/src/share/vm/prims/jni.cpp:717 | |
| Event: 12104.552 Thread 0x00002aaaac89f800 Threw 0x000000059a505820 at /HUDSON/workspace/7u-2-build-linux-amd64@2/jdk7u51/527/hotspot/src/share/vm/prims/jni.cpp:717 | |
| Event: 12104.552 Thread 0x00002aac14006800 Threw 0x000000059a886640 at /HUDSON/workspace/7u-2-build-linux-amd64@2/jdk7u51/527/hotspot/src/share/vm/prims/jni.cpp:717 | |
| Event: 12104.552 Thread 0x00002aac14006800 Threw 0x000000059a886d98 at /HUDSON/workspace/7u-2-build-linux-amd64@2/jdk7u51/527/hotspot/src/share/vm/prims/jni.cpp:717 | |
| Event: 12104.552 Thread 0x00002aac14006800 Threw 0x000000059a887280 at /HUDSON/workspace/7u-2-build-linux-amd64@2/jdk7u51/527/hotspot/src/share/vm/prims/jni.cpp:717 | |
| Event: 12104.552 Thread 0x00002aaaac89f800 Threw 0x000000059a506080 at /HUDSON/workspace/7u-2-build-linux-amd64@2/jdk7u51/527/hotspot/src/share/vm/prims/jni.cpp:717 | |
| Events (10 events): | |
| Event: 12094.486 Executing VM operation: RevokeBias done | |
| Event: 12094.486 Executing VM operation: RevokeBias | |
| Event: 12094.486 Executing VM operation: RevokeBias done | |
| Event: 12094.486 Thread 0x00002aac14006800 Thread exited: 0x00002aac14006800 | |
| Event: 12104.507 Thread 0x00002aac14006800 Thread added: 0x00002aac14006800 | |
| Event: 12104.507 Thread 0x00002aac14013000 Thread added: 0x00002aac14013000 | |
| Event: 12104.507 Thread 0x00002aac68007800 Thread added: 0x00002aac68007800 | |
| Event: 12104.508 Thread 0x00002aacac00b800 Thread added: 0x00002aacac00b800 | |
| Event: 12104.508 Thread 0x00002aac14013800 Thread added: 0x00002aac14013800 | |
| Event: 12104.516 Thread 0x00002aac14014000 Thread added: 0x00002aac14014000 | |
| Dynamic libraries: | |
| 00400000-00401000 r-xp 00000000 00:12 143279745 /cm/shared/apps/java/oracle/jdk1.7.0_51/bin/java | |
| 00600000-00601000 rw-p 00000000 00:12 143279745 /cm/shared/apps/java/oracle/jdk1.7.0_51/bin/java | |
| 00601000-00622000 rw-p 00000000 00:00 0 [heap] | |
| 80000000-81900000 rw-p 00000000 00:00 0 | |
| 81900000-85200000 rw-p 00000000 00:00 0 | |
| 85200000-d9100000 rw-p 00000000 00:00 0 | |
| d9100000-581b00000 rw-p 00000000 00:00 0 | |
| 581b00000-5cb300000 rw-p 00000000 00:00 0 | |
| 5cb300000-800000000 rw-p 00000000 00:00 0 | |
| 3af1a00000-3af1a20000 r-xp 00000000 08:01 899598 /lib64/ld-2.12.so | |
| 3af1c1f000-3af1c20000 r--p 0001f000 08:01 899598 /lib64/ld-2.12.so | |
| 3af1c20000-3af1c21000 rw-p 00020000 08:01 899598 /lib64/ld-2.12.so | |
| 3af1c21000-3af1c22000 rw-p 00000000 00:00 0 | |
| 3af1e00000-3af1e02000 r-xp 00000000 08:01 899874 /lib64/libdl-2.12.so | |
| 3af1e02000-3af2002000 ---p 00002000 08:01 899874 /lib64/libdl-2.12.so | |
| 3af2002000-3af2003000 r--p 00002000 08:01 899874 /lib64/libdl-2.12.so | |
| 3af2003000-3af2004000 rw-p 00003000 08:01 899874 /lib64/libdl-2.12.so | |
| 3af2200000-3af238a000 r-xp 00000000 08:01 899845 /lib64/libc-2.12.so | |
| 3af238a000-3af258a000 ---p 0018a000 08:01 899845 /lib64/libc-2.12.so | |
| 3af258a000-3af258e000 r--p 0018a000 08:01 899845 /lib64/libc-2.12.so | |
| 3af258e000-3af258f000 rw-p 0018e000 08:01 899845 /lib64/libc-2.12.so | |
| 3af258f000-3af2594000 rw-p 00000000 00:00 0 | |
| 3af2600000-3af2617000 r-xp 00000000 08:01 899875 /lib64/libpthread-2.12.so | |
| 3af2617000-3af2817000 ---p 00017000 08:01 899875 /lib64/libpthread-2.12.so | |
| 3af2817000-3af2818000 r--p 00017000 08:01 899875 /lib64/libpthread-2.12.so | |
| 3af2818000-3af2819000 rw-p 00018000 08:01 899875 /lib64/libpthread-2.12.so | |
| 3af2819000-3af281d000 rw-p 00000000 00:00 0 | |
| 3af2a00000-3af2a07000 r-xp 00000000 08:01 899876 /lib64/librt-2.12.so | |
| 3af2a07000-3af2c06000 ---p 00007000 08:01 899876 /lib64/librt-2.12.so | |
| 3af2c06000-3af2c07000 r--p 00006000 08:01 899876 /lib64/librt-2.12.so | |
| 3af2c07000-3af2c08000 rw-p 00007000 08:01 899876 /lib64/librt-2.12.so | |
| 3af2e00000-3af2e83000 r-xp 00000000 08:01 899870 /lib64/libm-2.12.so | |
| 3af2e83000-3af3082000 ---p 00083000 08:01 899870 /lib64/libm-2.12.so | |
| 3af3082000-3af3083000 r--p 00082000 08:01 899870 /lib64/libm-2.12.so | |
| 3af3083000-3af3084000 rw-p 00083000 08:01 899870 /lib64/libm-2.12.so | |
| 3af3e00000-3af3e16000 r-xp 00000000 08:01 899882 /lib64/libresolv-2.12.so | |
| 3af3e16000-3af4016000 ---p 00016000 08:01 899882 /lib64/libresolv-2.12.so | |
| 3af4016000-3af4017000 r--p 00016000 08:01 899882 /lib64/libresolv-2.12.so | |
| 3af4017000-3af4018000 rw-p 00017000 08:01 899882 /lib64/libresolv-2.12.so | |
| 3af4018000-3af401a000 rw-p 00000000 00:00 0 | |
| 2aaaaaaab000-2aaaaaaac000 r-xp 00000000 00:00 0 [vdso] | |
| 2aaaaaaac000-2aaaaaaad000 rw-p 00000000 00:00 0 | |
| 2aaaaaac5000-2aaaaaac6000 rw-p 00000000 00:00 0 | |
| 2aaaaaac6000-2aaaaaadc000 r-xp 00000000 00:12 143279810 /cm/shared/apps/java/oracle/jdk1.7.0_51/lib/amd64/jli/libjli.so | |
| 2aaaaaadc000-2aaaaacdc000 ---p 00016000 00:12 143279810 /cm/shared/apps/java/oracle/jdk1.7.0_51/lib/amd64/jli/libjli.so | |
| 2aaaaacdc000-2aaaaacdd000 rw-p 00016000 00:12 143279810 /cm/shared/apps/java/oracle/jdk1.7.0_51/lib/amd64/jli/libjli.so | |
| 2aaaaacdd000-2aaaaace0000 rw-p 00000000 00:00 0 | |
| 2aaaaace0000-2aaaab842000 r-xp 00000000 00:12 145088982 /cm/shared/apps/java/oracle/jdk1.7.0_51/jre/lib/amd64/server/libjvm.so | |
| 2aaaab842000-2aaaaba42000 ---p 00b62000 00:12 145088982 /cm/shared/apps/java/oracle/jdk1.7.0_51/jre/lib/amd64/server/libjvm.so | |
| 2aaaaba42000-2aaaabb05000 rw-p 00b62000 00:12 145088982 /cm/shared/apps/java/oracle/jdk1.7.0_51/jre/lib/amd64/server/libjvm.so | |
| 2aaaabb05000-2aaaabb46000 rw-p 00000000 00:00 0 | |
| 2aaaabb46000-2aaaabb49000 ---p 00000000 00:00 0 | |
| 2aaaabb49000-2aaaabc47000 rw-p 00000000 00:00 0 | |
| 2aaaabc47000-2aaaabc54000 r-xp 00000000 00:12 144901405 /cm/shared/apps/java/oracle/jdk1.7.0_51/jre/lib/amd64/libverify.so | |
| 2aaaabc54000-2aaaabe53000 ---p 0000d000 00:12 144901405 /cm/shared/apps/java/oracle/jdk1.7.0_51/jre/lib/amd64/libverify.so | |
| 2aaaabe53000-2aaaabe55000 rw-p 0000c000 00:12 144901405 /cm/shared/apps/java/oracle/jdk1.7.0_51/jre/lib/amd64/libverify.so | |
| 2aaaac000000-2aaaaca96000 rw-p 00000000 00:00 0 | |
| 2aaaaca96000-2aaab0000000 ---p 00000000 00:00 0 | |
| 2aaab0000000-2aaab0029000 r-xp 00000000 00:12 144901407 /cm/shared/apps/java/oracle/jdk1.7.0_51/jre/lib/amd64/libjava.so | |
| 2aaab0029000-2aaab0229000 ---p 00029000 00:12 144901407 /cm/shared/apps/java/oracle/jdk1.7.0_51/jre/lib/amd64/libjava.so | |
| 2aaab0229000-2aaab022b000 rw-p 00029000 00:12 144901407 /cm/shared/apps/java/oracle/jdk1.7.0_51/jre/lib/amd64/libjava.so | |
| 2aaab022b000-2aaab022c000 ---p 00000000 00:00 0 | |
| 2aaab022c000-2aaab022d000 rw-p 00000000 00:00 0 | |
| 2aaab022d000-2aaab0235000 rw-s 00000000 08:03 1933314 /tmp/hsperfdata_s418665/76395 | |
| 2aaab0245000-2aaab0251000 r-xp 00000000 08:01 899576 /lib64/libnss_files-2.12.so | |
| 2aaab0251000-2aaab0451000 ---p 0000c000 08:01 899576 /lib64/libnss_files-2.12.so | |
| 2aaab0451000-2aaab0452000 r--p 0000c000 08:01 899576 /lib64/libnss_files-2.12.so | |
| 2aaab0452000-2aaab0453000 rw-p 0000d000 08:01 899576 /lib64/libnss_files-2.12.so | |
| 2aaab0453000-2aaab045e000 r-xp 00000000 08:01 899578 /lib64/libnss_ldap.so.2 | |
| 2aaab045e000-2aaab065d000 ---p 0000b000 08:01 899578 /lib64/libnss_ldap.so.2 | |
| 2aaab065d000-2aaab065e000 rw-p 0000a000 08:01 899578 /lib64/libnss_ldap.so.2 | |
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| 2aabf2483000-2aabf2485000 r--s 00013000 00:12 15042615 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/ch/grengine/grengine/1.0.3/grengine-1.0.3.jar | |
| 2aabf2485000-2aabf248a000 r--s 00041000 00:12 15051699 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/commons-lang/commons-lang/2.6/commons-lang-2.6.jar | |
| 2aabf248a000-2aabf248c000 r--s 0000d000 00:12 14642088 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/com/beust/jcommander/1.35/jcommander-1.35.jar | |
| 2aabf248c000-2aabf2492000 r--s 0004d000 00:12 14329273 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/com/esotericsoftware/kryo/kryo/2.24.0/kryo-2.24.0.jar | |
| 2aabf2492000-2aabf2497000 r--s 00034000 00:12 14904205 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/org/iq80/leveldb/leveldb/0.7/leveldb-0.7.jar | |
| 2aabf2497000-2aabf24ba000 r--s 0021b000 00:12 14887848 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/org/eclipse/jgit/org.eclipse.jgit/4.3.1.201605051710-r/org.eclipse.jgit-4.3.1.201605051710-r.jar | |
| 2aabf24ba000-2aabf24bc000 r--s 0000a000 00:12 14961587 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/io/nextflow/nxf-s3fs/1.0.0/nxf-s3fs-1.0.0.jar | |
| 2aabf24bc000-2aabf24ca000 r--s 00091000 00:12 14642065 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/com/amazonaws/aws-java-sdk-s3/1.11.25/aws-java-sdk-s3-1.11.25.jar | |
| 2aabf24ca000-2aabf24fa000 r--s 00344000 00:12 14412710 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/com/amazonaws/aws-java-sdk-ec2/1.11.25/aws-java-sdk-ec2-1.11.25.jar | |
| 2aabf24fa000-2aabf2502000 r--s 00078000 00:12 15042640 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/javax/mail/mail/1.4.7/mail-1.4.7.jar | |
| 2aabf2502000-2aabf2509000 r--s 0003f000 00:12 14904213 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/org/yaml/snakeyaml/1.18/snakeyaml-1.18.jar | |
| 2aabf2509000-2aabf2534000 r--s 001f5000 00:12 14388115 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/com/google/guava/guava/16.0.1/guava-16.0.1.jar | |
| 2aabf2534000-2aabf2538000 r--s 00031000 00:12 14691241 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/org/codehaus/groovy/groovy-xml/2.4.10/groovy-xml-2.4.10.jar | |
| 2aabf2538000-2aabf253e000 r--s 00037000 00:12 14961573 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/org/multiverse/multiverse-core/0.7.0/multiverse-core-0.7.0.jar | |
| 2aabf253e000-2aabf253f000 r--s 0000e000 00:12 14691233 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/org/codehaus/jsr166-mirror/jsr166y/1.7.0/jsr166y-1.7.0.jar | |
| 2aabf253f000-2aabf2541000 r--s 00009000 00:12 14683044 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/org/objenesis/objenesis/2.1/objenesis-2.1.jar | |
| 2aabf2541000-2aabf2543000 r--s 00001000 00:12 14904193 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/org/iq80/leveldb/leveldb-api/0.7/leveldb-api-0.7.jar | |
| 2aabf2543000-2aabf2548000 r--s 00040000 00:12 14642073 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/com/jcraft/jsch/0.1.53/jsch-0.1.53.jar | |
| 2aabf2548000-2aabf254b000 r--s 0001c000 00:12 14388129 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/com/googlecode/javaewah/JavaEWAH/0.7.9/JavaEWAH-0.7.9.jar | |
| 2aabf254b000-2aabf2552000 r--s 00058000 00:12 14419838 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/com/amazonaws/aws-java-sdk-kms/1.11.25/aws-java-sdk-kms-1.11.25.jar | |
| 2aabf2552000-2aabf2563000 r--s 00097000 00:12 14412722 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/com/amazonaws/aws-java-sdk-core/1.11.25/aws-java-sdk-core-1.11.25.jar | |
| 2aabf2563000-2aabf2565000 r--s 00005000 00:12 14642058 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/com/amazonaws/jmespath-java/1.0/jmespath-java-1.0.jar | |
| 2aabf2565000-2aabf2567000 r--s 0000e000 00:12 15042632 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/javax/activation/activation/1.1/activation-1.1.jar | |
| 2aabf2567000-2aabf2578000 r--s 0010d000 00:12 14388146 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/com/fasterxml/jackson/core/jackson-databind/2.6.6/jackson-databind-2.6.6.jar | |
| 2aabf2578000-2aabf2579000 r--s 0000b000 00:12 14412693 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/com/fasterxml/jackson/dataformat/jackson-dataformat-cbor/2.6.6/jackson-dataformat-cbor-2.6.6.jar | |
| 2aabf2579000-2aabf2589000 r--s 00088000 00:12 15051691 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/joda-time/joda-time/2.8.1/joda-time-2.8.1.jar | |
| 2aabf2589000-2aabf258c000 r--s 00009000 00:12 14412676 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/com/fasterxml/jackson/core/jackson-annotations/2.6.0/jackson-annotations-2.6.0.jar | |
| 2aabf258c000-2aabf2590000 r--s 0003c000 00:12 14388139 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/com/fasterxml/jackson/core/jackson-core/2.6.6/jackson-core-2.6.6.jar | |
| 2aabf2590000-2aabf2592000 r--s 00009000 00:12 14961565 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/org/slf4j/slf4j-api/1.7.22/slf4j-api-1.7.22.jar | |
| 2aabf2592000-2aabf259f000 r--s 000a7000 00:12 14699439 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/org/apache/httpcomponents/httpclient/4.5.2/httpclient-4.5.2.jar | |
| 2aabf259f000-2aabf25a6000 r--s 00049000 00:12 14699422 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/org/apache/httpcomponents/httpcore/4.4.4/httpcore-4.4.4.jar | |
| 2aabf25a6000-2aabf25ad000 r--s 0003a000 00:12 15042623 /cm/shared/apps/nextflow/0.24.1-SNAPSHOT/capsule/deps/commons-codec/commons-codec/1.9/commons-codec-1.9.jar | |
| 2aabf25ad000-2aabf25c3000 r-xp 00000000 00:12 144901378 /cm/shared/apps/java/oracle/jdk1.7.0_51/jre/lib/amd64/libnet.so | |
| 2aabf25c3000-2aabf27c3000 ---p 00016000 00:12 144901378 /cm/shared/apps/java/oracle/jdk1.7.0_51/jre/lib/amd64/libnet.so | |
| 2aabf27c3000-2aabf27c4000 rw-p 00016000 00:12 144901378 /cm/shared/apps/java/oracle/jdk1.7.0_51/jre/lib/amd64/libnet.so | |
| 2aabf27c4000-2aabf2ac5000 rw-p 00000000 00:00 0 | |
| 2aabf2ac5000-2aabf2ad5000 r-xp 00000000 00:12 144901373 /cm/shared/apps/java/oracle/jdk1.7.0_51/jre/lib/amd64/libnio.so | |
| 2aabf2ad5000-2aabf2cd5000 ---p 00010000 00:12 144901373 /cm/shared/apps/java/oracle/jdk1.7.0_51/jre/lib/amd64/libnio.so | |
| 2aabf2cd5000-2aabf2cd6000 rw-p 00010000 00:12 144901373 /cm/shared/apps/java/oracle/jdk1.7.0_51/jre/lib/amd64/libnio.so | |
| 2aabf2cd6000-2aabf2ce1000 r--s 0037c000 00:12 144729309 /cm/shared/apps/java/oracle/jdk1.7.0_51/jre/lib/charsets.jar | |
| 2aabf2ce1000-2aabf2ce5000 r--s 000f7000 00:12 145293396 /cm/shared/apps/java/oracle/jdk1.7.0_51/jre/lib/ext/localedata.jar | |
| 2aabf2ce5000-2aabf2ce9000 r--s 0008a000 00:12 144729316 /cm/shared/apps/java/oracle/jdk1.7.0_51/jre/lib/jsse.jar | |
| 2aabf2ce9000-2aabf2cf3000 r--s 00250000 00:12 144729321 /cm/shared/apps/java/oracle/jdk1.7.0_51/jre/lib/resources.jar | |
| 2aabf2cf3000-2aabf2cfb000 r-xp 00000000 00:12 144901414 /cm/shared/apps/java/oracle/jdk1.7.0_51/jre/lib/amd64/libmanagement.so | |
| 2aabf2cfb000-2aabf2efa000 ---p 00008000 00:12 144901414 /cm/shared/apps/java/oracle/jdk1.7.0_51/jre/lib/amd64/libmanagement.so | |
| 2aabf2efa000-2aabf2efb000 rw-p 00007000 00:12 144901414 /cm/shared/apps/java/oracle/jdk1.7.0_51/jre/lib/amd64/libmanagement.so | |
| 2aabf2f13000-2aabf2f18000 r-xp 00000000 08:01 899575 /lib64/libnss_dns-2.12.so | |
| 2aabf2f18000-2aabf3117000 ---p 00005000 08:01 899575 /lib64/libnss_dns-2.12.so | |
| 2aabf3117000-2aabf3118000 r--p 00004000 08:01 899575 /lib64/libnss_dns-2.12.so | |
| 2aabf3118000-2aabf3119000 rw-p 00005000 08:01 899575 /lib64/libnss_dns-2.12.so | |
| 2aabf3119000-2aabf311c000 ---p 00000000 00:00 0 | |
| 2aabf311c000-2aabf3152000 rw-p 00000000 00:00 0 | |
| 2aabf3152000-2aabf3252000 rw-s 00000000 a7b:20ecc 144116292016711815 /project/SCCC/DOrso_lab/s418665/.nextflow/cache/b274a97f-b819-4b13-9289-87b8e879bf88/db/000003.log | |
| 2aabf3252000-2aabf3352000 rw-s 00000000 a7b:20ecc 144116292016711816 /project/SCCC/DOrso_lab/s418665/.nextflow/cache/b274a97f-b819-4b13-9289-87b8e879bf88/db/MANIFEST-000002 | |
| 2aabf4000000-2aabf4021000 rw-p 00000000 00:00 0 | |
| 2aabf4021000-2aabf8000000 ---p 00000000 00:00 0 | |
| 2aabf8000000-2aabf90ad000 rw-p 00000000 00:00 0 | |
| 2aabf90ad000-2aabfc000000 ---p 00000000 00:00 0 | |
| 2aabfc000000-2aabfd0bc000 rw-p 00000000 00:00 0 | |
| 2aabfd0bc000-2aac00000000 ---p 00000000 00:00 0 | |
| 2aac00000000-2aac00021000 rw-p 00000000 00:00 0 | |
| 2aac00021000-2aac04000000 ---p 00000000 00:00 0 | |
| 2aac04000000-2aac04021000 rw-p 00000000 00:00 0 | |
| 2aac04021000-2aac08000000 ---p 00000000 00:00 0 | |
| 2aac08000000-2aac08021000 rw-p 00000000 00:00 0 | |
| 2aac08021000-2aac0c000000 ---p 00000000 00:00 0 | |
| 2aac0c000000-2aac0c021000 rw-p 00000000 00:00 0 | |
| 2aac0c021000-2aac10000000 ---p 00000000 00:00 0 | |
| 2aac10000000-2aac10038000 rw-p 00000000 00:00 0 | |
| 2aac10038000-2aac14000000 ---p 00000000 00:00 0 | |
| 2aac14000000-2aac14262000 rw-p 00000000 00:00 0 | |
| 2aac14262000-2aac18000000 ---p 00000000 00:00 0 | |
| 2aac18000000-2aac1815f000 rw-p 00000000 00:00 0 | |
| 2aac1815f000-2aac1c000000 ---p 00000000 00:00 0 | |
| 2aac1c000000-2aac1c034000 rw-p 00000000 00:00 0 | |
| 2aac1c034000-2aac20000000 ---p 00000000 00:00 0 | |
| 2aac20000000-2aac20022000 rw-p 00000000 00:00 0 | |
| 2aac20022000-2aac24000000 ---p 00000000 00:00 0 | |
| 2aac24000000-2aac24021000 rw-p 00000000 00:00 0 | |
| 2aac24021000-2aac28000000 ---p 00000000 00:00 0 | |
| 2aac28000000-2aac28021000 rw-p 00000000 00:00 0 | |
| 2aac28021000-2aac2c000000 ---p 00000000 00:00 0 | |
| 2aac2c000000-2aac2c021000 rw-p 00000000 00:00 0 | |
| 2aac2c021000-2aac30000000 ---p 00000000 00:00 0 | |
| 2aac30000000-2aac30024000 rw-p 00000000 00:00 0 | |
| 2aac30024000-2aac34000000 ---p 00000000 00:00 0 | |
| 2aac34000000-2aac34021000 rw-p 00000000 00:00 0 | |
| 2aac34021000-2aac38000000 ---p 00000000 00:00 0 | |
| 2aac38000000-2aac38026000 rw-p 00000000 00:00 0 | |
| 2aac38026000-2aac3c000000 ---p 00000000 00:00 0 | |
| 2aac3c000000-2aac3c0a7000 rw-p 00000000 00:00 0 | |
| 2aac3c0a7000-2aac40000000 ---p 00000000 00:00 0 | |
| 2aac40000000-2aac40021000 rw-p 00000000 00:00 0 | |
| 2aac40021000-2aac44000000 ---p 00000000 00:00 0 | |
| 2aac44000000-2aac44021000 rw-p 00000000 00:00 0 | |
| 2aac44021000-2aac48000000 ---p 00000000 00:00 0 | |
| 2aac48000000-2aac48021000 rw-p 00000000 00:00 0 | |
| 2aac48021000-2aac4c000000 ---p 00000000 00:00 0 | |
| 2aac4c000000-2aac4c021000 rw-p 00000000 00:00 0 | |
| 2aac4c021000-2aac50000000 ---p 00000000 00:00 0 | |
| 2aac50000000-2aac50021000 rw-p 00000000 00:00 0 | |
| 2aac50021000-2aac54000000 ---p 00000000 00:00 0 | |
| 2aac54000000-2aac54021000 rw-p 00000000 00:00 0 | |
| 2aac54021000-2aac58000000 ---p 00000000 00:00 0 | |
| 2aac58000000-2aac58021000 rw-p 00000000 00:00 0 | |
| 2aac58021000-2aac5c000000 ---p 00000000 00:00 0 | |
| 2aac5c000000-2aac5c021000 rw-p 00000000 00:00 0 | |
| 2aac5c021000-2aac60000000 ---p 00000000 00:00 0 | |
| 2aac60000000-2aac60021000 rw-p 00000000 00:00 0 | |
| 2aac60021000-2aac64000000 ---p 00000000 00:00 0 | |
| 2aac64000000-2aac64021000 rw-p 00000000 00:00 0 | |
| 2aac64021000-2aac68000000 ---p 00000000 00:00 0 | |
| 2aac68000000-2aac68035000 rw-p 00000000 00:00 0 | |
| 2aac68035000-2aac6c000000 ---p 00000000 00:00 0 | |
| 2aac6c000000-2aac6c021000 rw-p 00000000 00:00 0 | |
| 2aac6c021000-2aac70000000 ---p 00000000 00:00 0 | |
| 2aac70000000-2aac70021000 rw-p 00000000 00:00 0 | |
| 2aac70021000-2aac74000000 ---p 00000000 00:00 0 | |
| 2aac74000000-2aac74021000 rw-p 00000000 00:00 0 | |
| 2aac74021000-2aac78000000 ---p 00000000 00:00 0 | |
| 2aac78000000-2aac78021000 rw-p 00000000 00:00 0 | |
| 2aac78021000-2aac7c000000 ---p 00000000 00:00 0 | |
| 2aac7c000000-2aac7c021000 rw-p 00000000 00:00 0 | |
| 2aac7c021000-2aac80000000 ---p 00000000 00:00 0 | |
| 2aac80000000-2aac80021000 rw-p 00000000 00:00 0 | |
| 2aac80021000-2aac84000000 ---p 00000000 00:00 0 | |
| 2aac84000000-2aac84021000 rw-p 00000000 00:00 0 | |
| 2aac84021000-2aac88000000 ---p 00000000 00:00 0 | |
| 2aac88000000-2aac88021000 rw-p 00000000 00:00 0 | |
| 2aac88021000-2aac8c000000 ---p 00000000 00:00 0 | |
| 2aac8c000000-2aac8c021000 rw-p 00000000 00:00 0 | |
| 2aac8c021000-2aac90000000 ---p 00000000 00:00 0 | |
| 2aac90000000-2aac90021000 rw-p 00000000 00:00 0 | |
| 2aac90021000-2aac94000000 ---p 00000000 00:00 0 | |
| 2aac94000000-2aac94029000 rw-p 00000000 00:00 0 | |
| 2aac94029000-2aac98000000 ---p 00000000 00:00 0 | |
| 2aac98000000-2aac98021000 rw-p 00000000 00:00 0 | |
| 2aac98021000-2aac9c000000 ---p 00000000 00:00 0 | |
| 2aac9c000000-2aac9c021000 rw-p 00000000 00:00 0 | |
| 2aac9c021000-2aaca0000000 ---p 00000000 00:00 0 | |
| 2aaca0000000-2aaca0021000 rw-p 00000000 00:00 0 | |
| 2aaca0021000-2aaca4000000 ---p 00000000 00:00 0 | |
| 2aaca4000000-2aaca4021000 rw-p 00000000 00:00 0 | |
| 2aaca4021000-2aaca8000000 ---p 00000000 00:00 0 | |
| 2aaca8000000-2aaca8021000 rw-p 00000000 00:00 0 | |
| 2aaca8021000-2aacac000000 ---p 00000000 00:00 0 | |
| 2aacac000000-2aacac021000 rw-p 00000000 00:00 0 | |
| 2aacac021000-2aacb0000000 ---p 00000000 00:00 0 | |
| 2aacb0000000-2aacb0021000 rw-p 00000000 00:00 0 | |
| 2aacb0021000-2aacb4000000 ---p 00000000 00:00 0 | |
| 2aacb4000000-2aacb4021000 rw-p 00000000 00:00 0 | |
| 2aacb4021000-2aacb8000000 ---p 00000000 00:00 0 | |
| 7ffffffe7000-7ffffffff000 rw-p 00000000 00:00 0 [stack] | |
| ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall] | |
| VM Arguments: | |
| jvm_args: -Xverify:none -Dhttp.proxyPort=3128 -Djava.io.tmpdir=/tmp/s418665/nextflow-temp -Dcapsule.app=nextflow_0.24.1-SNAPSHOT -Djava.awt.headless=true -Djava.library.path=/cm/shared/apps/libevent/gcc/2.1.8/lib:/cm/shared/apps/java/oracle/jdk1.7.0_51/lib:/cm/shared/apps/bcftools/intel/1.3/libexec/bcftools:/cm/shared/apps/intel/composer_xe_2015.0.090/compiler/lib/intel64:/cm/shared/apps/intel/composer_xe_2015.0.090/mpirt/lib/intel64:/cm/shared/apps/intel/composer_xe_2015.0.090/ipp/../compiler/lib/intel64:/cm/shared/apps/intel/composer_xe_2015.0.090/ipp/lib/intel64:/cm/shared/apps/intel/composer_xe_2015.0.090/compiler/lib/intel64:/cm/shared/apps/intel/composer_xe_2015.0.090/mkl/lib/intel64:/cm/shared/apps/java/oracle/jdk1.8.0_65/lib:/cm/shared/apps/perl/5.18.2/lib:/cm/shared/apps/gcc/5.4.0/lib:/cm/shared/apps/gcc/5.4.0/lib64:/cm/shared/apps/slurm/2.5.7/lib64/slurm:/cm/shared/apps/slurm/2.5.7/lib64:/usr/java/packages/lib/amd64:/usr/lib64:/lib64:/lib:/usr/lib -Dcapsule.jar=/cm/shared/apps/nextflow/0.24.1-SNAPSHOT/framework/0.24.1-SNAPSHOT/nextflow-0.24.1-SNAPSHOT-one.jar -Dhttp.proxyHost=proxy.swmed.edu -Dfile.encoding=UTF-8 -Dhttp.proxyHost=proxy.swmed.edu -Dhttp.proxyPort=3128 | |
| java_command: nextflow.cli.Launcher run rnaseq-cluster-slurm/main.nf --config /project/SCCC/DOrso_lab/s418665/config.txt --fasta genome.fa --gtf genes.gtf --lib p --readLen 75 --egs 2451960000 --strandInfo frFirstStrand --outdir results_star --aligner star | |
| Launcher Type: SUN_STANDARD | |
| Environment Variables: | |
| JAVA_HOME=/cm/shared/apps/java/oracle/jdk1.7.0_51 | |
| _JAVA_OPTIONS=-Dhttp.proxyHost=proxy.swmed.edu -Dhttp.proxyPort=3128 | |
| PATH=/cm/shared/apps/tmux/gcc/2.3/bin:/cm/shared/apps/libevent/gcc/2.1.8/bin:/cm/shared/apps/nextflow/0.24.1-SNAPSHOT/bin:/cm/shared/apps/java/oracle/jdk1.7.0_51/bin:/cm/shared/apps/fastqc/0.11.5:/cm/shared/apps/subread/1.5.0-intel/bin:/cm/shared/apps/bcftools/intel/1.2/bin:/cm/shared/apps/deeptools/2.5.0.1/bin:/cm/shared/apps/samtools/intel/1.3/bin:/cm/shared/apps/bcftools/intel/1.3/bin:/cm/shared/apps/python/2.7.x-anaconda/bin:/cm/shared/apps/intel/composer_xe_2015.0.090/bin/intel64:/cm/shared/apps/intel/composer_xe_2015.0.090/mpirt/bin/intel64:/cm/shared/apps/intel/composer_xe_2015.0.090/debugger/gdb/intel64_mic/py26/bin:/cm/shared/apps/intel/composer_xe_2015.0.090/debugger/gdb/intel64/py26/bin:/cm/shared/apps/intel/composer_xe_2015.0.090/bin/intel64:/cm/shared/apps/intel/composer_xe_2015.0.090/bin/intel64_mic:/cm/shared/apps/bbmap/36.92:/cm/shared/apps/java/oracle/jdk1.8.0_65/bin:/cm/shared/apps/star/2.5.2b/STAR/STAR-Fusion/FusionFilter:/cm/shared/apps/star/2.5.2b/STAR/STAR-Fusion:/cm/shared/apps/star/2.5.2b/STAR/STAR/bin/Linux_x86_64_static:/cm/shared/apps/perl/5.18.2/bin:/cm/shared/apps/gcc/5.4.0/bin:/cm/shared/apps/slurm/2.5.7/sbin:/cm/shared/apps/slurm/2.5.7/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/opt/ibutils/bin:/sbin:/usr/sbin:/opt/dell/srvadmin/bin:/home2/s418665/bin:/sbin:/usr/sbin:/home2/s418665/bin | |
| LD_LIBRARY_PATH=/cm/shared/apps/libevent/gcc/2.1.8/lib:/cm/shared/apps/java/oracle/jdk1.7.0_51/lib:/cm/shared/apps/bcftools/intel/1.3/libexec/bcftools:/cm/shared/apps/intel/composer_xe_2015.0.090/compiler/lib/intel64:/cm/shared/apps/intel/composer_xe_2015.0.090/mpirt/lib/intel64:/cm/shared/apps/intel/composer_xe_2015.0.090/ipp/../compiler/lib/intel64:/cm/shared/apps/intel/composer_xe_2015.0.090/ipp/lib/intel64:/cm/shared/apps/intel/composer_xe_2015.0.090/compiler/lib/intel64:/cm/shared/apps/intel/composer_xe_2015.0.090/mkl/lib/intel64:/cm/shared/apps/java/oracle/jdk1.8.0_65/lib:/cm/shared/apps/perl/5.18.2/lib:/cm/shared/apps/gcc/5.4.0/lib:/cm/shared/apps/gcc/5.4.0/lib64:/cm/shared/apps/slurm/2.5.7/lib64/slurm:/cm/shared/apps/slurm/2.5.7/lib64 | |
| SHELL=/bin/bash | |
| Signal Handlers: | |
| SIGSEGV: [libjvm.so+0x993870], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004 | |
| SIGBUS: [libjvm.so+0x993870], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004 | |
| SIGFPE: [libjvm.so+0x8105b0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004 | |
| SIGPIPE: [libjvm.so+0x8105b0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004 | |
| SIGXFSZ: [libjvm.so+0x8105b0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004 | |
| SIGILL: [libjvm.so+0x8105b0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004 | |
| SIGUSR1: SIG_DFL, sa_mask[0]=0x00000000, sa_flags=0x00000000 | |
| SIGUSR2: [libjvm.so+0x811aa0], sa_mask[0]=0x00000000, sa_flags=0x10000004 | |
| SIGHUP: [libjvm.so+0x812a10], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004 | |
| SIGINT: [libjvm.so+0x812a10], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004 | |
| SIGTERM: [libjvm.so+0x812a10], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004 | |
| SIGQUIT: [libjvm.so+0x812a10], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004 | |
| --------------- S Y S T E M --------------- | |
| OS:Red Hat Enterprise Linux Server release 6.6 (Santiago) | |
| uname:Linux 2.6.32-279.el6.x86_64 #1 SMP Wed Jun 13 18:24:36 EDT 2012 x86_64 | |
| libc:glibc 2.12 NPTL 2.12 | |
| rlimit: STACK infinity, CORE 0k, NPROC 1024, NOFILE 65536, AS infinity | |
| load average:3.04 2.97 3.11 | |
| /proc/meminfo: | |
| MemTotal: 132055256 kB | |
| MemFree: 91508632 kB | |
| Buffers: 3392 kB | |
| Cached: 14748900 kB | |
| SwapCached: 93068 kB | |
| Active: 18749764 kB | |
| Inactive: 14705632 kB | |
| Active(anon): 17954280 kB | |
| Inactive(anon): 804260 kB | |
| Active(file): 795484 kB | |
| Inactive(file): 13901372 kB | |
| Unevictable: 1100604 kB | |
| Mlocked: 196228 kB | |
| SwapTotal: 63999992 kB | |
| SwapFree: 54223384 kB | |
| Dirty: 216 kB | |
| Writeback: 0 kB | |
| AnonPages: 19799260 kB | |
| Mapped: 327528 kB | |
| Shmem: 3104 kB | |
| Slab: 3107596 kB | |
| SReclaimable: 297724 kB | |
| SUnreclaim: 2809872 kB | |
| KernelStack: 22872 kB | |
| PageTables: 172480 kB | |
| NFS_Unstable: 0 kB | |
| Bounce: 0 kB | |
| WritebackTmp: 0 kB | |
| CommitLimit: 130027620 kB | |
| Committed_AS: 38113920 kB | |
| VmallocTotal: 34359738367 kB | |
| VmallocUsed: 1326892 kB | |
| VmallocChunk: 34289841484 kB | |
| HardwareCorrupted: 0 kB | |
| AnonHugePages: 3524608 kB | |
| HugePages_Total: 0 | |
| HugePages_Free: 0 | |
| HugePages_Rsvd: 0 | |
| HugePages_Surp: 0 | |
| Hugepagesize: 2048 kB | |
| DirectMap4k: 7168 kB | |
| DirectMap2M: 2015232 kB | |
| DirectMap1G: 132120576 kB | |
| CPU:total 40 (10 cores per cpu, 2 threads per core) family 6 model 63 stepping 2, cmov, cx8, fxsr, mmx, sse, sse2, sse3, ssse3, sse4.1, sse4.2, popcnt, avx, avx2, aes, erms, ht, tsc, tscinvbit | |
| /proc/cpuinfo: | |
| processor : 0 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 0 | |
| siblings : 20 | |
| core id : 0 | |
| cpu cores : 10 | |
| apicid : 0 | |
| initial apicid : 0 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4600.16 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 1 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 1 | |
| siblings : 20 | |
| core id : 0 | |
| cpu cores : 10 | |
| apicid : 32 | |
| initial apicid : 32 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4599.33 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 2 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 0 | |
| siblings : 20 | |
| core id : 1 | |
| cpu cores : 10 | |
| apicid : 2 | |
| initial apicid : 2 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4600.16 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 3 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 1 | |
| siblings : 20 | |
| core id : 1 | |
| cpu cores : 10 | |
| apicid : 34 | |
| initial apicid : 34 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4599.33 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 4 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 0 | |
| siblings : 20 | |
| core id : 2 | |
| cpu cores : 10 | |
| apicid : 4 | |
| initial apicid : 4 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4600.16 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 5 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 1 | |
| siblings : 20 | |
| core id : 2 | |
| cpu cores : 10 | |
| apicid : 36 | |
| initial apicid : 36 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4599.33 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 6 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 0 | |
| siblings : 20 | |
| core id : 3 | |
| cpu cores : 10 | |
| apicid : 6 | |
| initial apicid : 6 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4600.16 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 7 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 1 | |
| siblings : 20 | |
| core id : 3 | |
| cpu cores : 10 | |
| apicid : 38 | |
| initial apicid : 38 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4599.33 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 8 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 0 | |
| siblings : 20 | |
| core id : 4 | |
| cpu cores : 10 | |
| apicid : 8 | |
| initial apicid : 8 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4600.16 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 9 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 1 | |
| siblings : 20 | |
| core id : 4 | |
| cpu cores : 10 | |
| apicid : 40 | |
| initial apicid : 40 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4599.33 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 10 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 0 | |
| siblings : 20 | |
| core id : 8 | |
| cpu cores : 10 | |
| apicid : 16 | |
| initial apicid : 16 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4600.16 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 11 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 1 | |
| siblings : 20 | |
| core id : 8 | |
| cpu cores : 10 | |
| apicid : 48 | |
| initial apicid : 48 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4599.33 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 12 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 0 | |
| siblings : 20 | |
| core id : 9 | |
| cpu cores : 10 | |
| apicid : 18 | |
| initial apicid : 18 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4600.16 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 13 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 1 | |
| siblings : 20 | |
| core id : 9 | |
| cpu cores : 10 | |
| apicid : 50 | |
| initial apicid : 50 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4599.33 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 14 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 0 | |
| siblings : 20 | |
| core id : 10 | |
| cpu cores : 10 | |
| apicid : 20 | |
| initial apicid : 20 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4600.16 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 15 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 1 | |
| siblings : 20 | |
| core id : 10 | |
| cpu cores : 10 | |
| apicid : 52 | |
| initial apicid : 52 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4599.33 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 16 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 0 | |
| siblings : 20 | |
| core id : 11 | |
| cpu cores : 10 | |
| apicid : 22 | |
| initial apicid : 22 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4600.16 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 17 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 1 | |
| siblings : 20 | |
| core id : 11 | |
| cpu cores : 10 | |
| apicid : 54 | |
| initial apicid : 54 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4599.33 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 18 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 0 | |
| siblings : 20 | |
| core id : 12 | |
| cpu cores : 10 | |
| apicid : 24 | |
| initial apicid : 24 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4600.16 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 19 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 1 | |
| siblings : 20 | |
| core id : 12 | |
| cpu cores : 10 | |
| apicid : 56 | |
| initial apicid : 56 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4599.33 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 20 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 0 | |
| siblings : 20 | |
| core id : 0 | |
| cpu cores : 10 | |
| apicid : 1 | |
| initial apicid : 1 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4600.16 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 21 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 1 | |
| siblings : 20 | |
| core id : 0 | |
| cpu cores : 10 | |
| apicid : 33 | |
| initial apicid : 33 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4599.33 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 22 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 0 | |
| siblings : 20 | |
| core id : 1 | |
| cpu cores : 10 | |
| apicid : 3 | |
| initial apicid : 3 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4600.16 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 23 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 1 | |
| siblings : 20 | |
| core id : 1 | |
| cpu cores : 10 | |
| apicid : 35 | |
| initial apicid : 35 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4599.33 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 24 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 0 | |
| siblings : 20 | |
| core id : 2 | |
| cpu cores : 10 | |
| apicid : 5 | |
| initial apicid : 5 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4600.16 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 25 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 1 | |
| siblings : 20 | |
| core id : 2 | |
| cpu cores : 10 | |
| apicid : 37 | |
| initial apicid : 37 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4599.33 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 26 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 0 | |
| siblings : 20 | |
| core id : 3 | |
| cpu cores : 10 | |
| apicid : 7 | |
| initial apicid : 7 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4600.16 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 27 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 1 | |
| siblings : 20 | |
| core id : 3 | |
| cpu cores : 10 | |
| apicid : 39 | |
| initial apicid : 39 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4599.33 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 28 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 0 | |
| siblings : 20 | |
| core id : 4 | |
| cpu cores : 10 | |
| apicid : 9 | |
| initial apicid : 9 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4600.16 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 29 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 1 | |
| siblings : 20 | |
| core id : 4 | |
| cpu cores : 10 | |
| apicid : 41 | |
| initial apicid : 41 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4599.33 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 30 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 0 | |
| siblings : 20 | |
| core id : 8 | |
| cpu cores : 10 | |
| apicid : 17 | |
| initial apicid : 17 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4600.16 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 31 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 1 | |
| siblings : 20 | |
| core id : 8 | |
| cpu cores : 10 | |
| apicid : 49 | |
| initial apicid : 49 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4599.33 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 32 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 0 | |
| siblings : 20 | |
| core id : 9 | |
| cpu cores : 10 | |
| apicid : 19 | |
| initial apicid : 19 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4600.16 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 33 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 1 | |
| siblings : 20 | |
| core id : 9 | |
| cpu cores : 10 | |
| apicid : 51 | |
| initial apicid : 51 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4599.33 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 34 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 0 | |
| siblings : 20 | |
| core id : 10 | |
| cpu cores : 10 | |
| apicid : 21 | |
| initial apicid : 21 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4600.16 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 35 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 1 | |
| siblings : 20 | |
| core id : 10 | |
| cpu cores : 10 | |
| apicid : 53 | |
| initial apicid : 53 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4599.33 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 36 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 0 | |
| siblings : 20 | |
| core id : 11 | |
| cpu cores : 10 | |
| apicid : 23 | |
| initial apicid : 23 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4600.16 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 37 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 1 | |
| siblings : 20 | |
| core id : 11 | |
| cpu cores : 10 | |
| apicid : 55 | |
| initial apicid : 55 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4599.33 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 38 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 0 | |
| siblings : 20 | |
| core id : 12 | |
| cpu cores : 10 | |
| apicid : 25 | |
| initial apicid : 25 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4600.16 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| processor : 39 | |
| vendor_id : GenuineIntel | |
| cpu family : 6 | |
| model : 63 | |
| model name : Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz | |
| stepping : 2 | |
| cpu MHz : 2300.082 | |
| cache size : 25600 KB | |
| physical id : 1 | |
| siblings : 20 | |
| core id : 12 | |
| cpu cores : 10 | |
| apicid : 57 | |
| initial apicid : 57 | |
| fpu : yes | |
| fpu_exception : yes | |
| cpuid level : 15 | |
| wp : yes | |
| flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 fma cx16 xtpr pdcm dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm ida arat epb xsaveopt pln pts dts tpr_shadow vnmi flexpriority ept vpid fsgsbase bmi1 smep erms | |
| bogomips : 4599.33 | |
| clflush size : 64 | |
| cache_alignment : 64 | |
| address sizes : 46 bits physical, 48 bits virtual | |
| power management: | |
| Memory: 4k page, physical 132055256k(91508136k free), swap 63999992k(54223384k free) | |
| vm_info: Java HotSpot(TM) 64-Bit Server VM (24.51-b03) for linux-amd64 JRE (1.7.0_51-b13), built on Dec 18 2013 18:48:01 by "java_re" with gcc 4.3.0 20080428 (Red Hat 4.3.0-8) | |
| time: Tue May 23 17:00:39 2017 | |
| elapsed time: 12104 seconds | |
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