Simeon Wong dtxe

Building responsive neuromodulation strategies to help children with epilepsy at SickKids and the University of Toronto

dtxe / temperature anomalies.csv

Created November 27, 2023 05:22

MAT188H1-2023F-HW5 temperature anomalies data

dtxe / eyetracker_visdeg_to_px.py

Last active July 6, 2023 03:25

Convert psychopy visual degrees to monitor pixels. Originally designed for iohub tobii eyetracker recordings.

	import math
	from typing import Tuple

	def vdeg_to_px(
	gaze_vdeg:Tuple[float, float],
	screen_size_cm:Tuple[float, float],
	screen_size_px:Tuple[int, int],
	viewer_distance_cm:float,
	) -> Tuple[float, float]:
	'''

dtxe / mne_interpolate.py

Created March 28, 2023 14:23

MNE interpolate new scalp channels

	import mne

	mneraw = mne.read_raw_edf('file.edf')
	electrodes = ['Fpz', 'Cz']

	# if electrodes to plot are not available, try to interpolate them
	electrodes_not_in_list = [e for e in electrodes if e not in mneraw.ch_names]

	if len(electrodes_not_in_list) > 0:
	try:

dtxe / dump_dicom_headers.py

Last active March 3, 2023 20:10

quick and dirty script to glob a directory of dicom files and extract the header information into a csv file

	''' quick and dirty script to glob a directory of dicom files and extract the header information into a csv file '''

	import pydicom
	import glob
	import pandas as pd
	from tqdm import tqdm
	import numpy as np

	###########################
	# Parameters

dtxe / installgfortran.sh

Last active November 9, 2022 17:43

backport install libgfortran3 and g++-6 on ubuntu 20.04 focal for simbio and fieldtrip

	#!/bin/bash

	cat - << EOF > /etc/apt/sources.d/bionic.list
	deb http://ca.archive.ubuntu.com/ubuntu/ bionic main
	deb http://ca.archive.ubuntu.com/ubuntu/ bionic universe
	EOF

	apt update
	apt install -y g++-6
	apt install -y libgfortran3

dtxe / pass_by_assignment_demo.py

Created February 24, 2022 19:51

dtxe / fixQpdf.sh

Created October 20, 2021 19:42

Use ghostscript to repair all PDFs within a ZIP file (of student submissions from UofT Quercus)

	#!/bin/bash -x

	# fixQpdf.sh [zip file] [output folder]


	BASEDIR=$HOME
	TEMPDIR=$(uuidgen)
	mkdir $BASEDIR/$TEMPDIR
	mkdir $BASEDIR/$2

dtxe / circ_buffer_speedtest.py

Created March 9, 2021 01:11

Test which implementation of circular buffers is fastest for receiving chunks of streaming data

	import numpy as np
	from collections import deque

	import datetime

	iters = 2000
	values = np.random.rand(10000)


	def nproll():

dtxe / scrape_bible_plan.sh

Last active December 11, 2023 17:32

Scrape BibleProject discussion posts from YouVersion bible plans

	#!/bin/bash

	PLANID=12345678
	JWTTOKEN={{TOKEN}}

	for DAY in {1..365}
	do
	curl 'https://plans.youversionapi.com/4.0/together/$PLANID/activities?day=$DAY&page=1&order=desc&talk_it_over=0' \
	-H 'authority: plans.youversionapi.com' \
	-H 'x-youversion-app-version: 4' \

dtxe / extract_scalp_sleep.py

Last active November 20, 2020 15:03