Created
June 15, 2017 16:55
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create stimulus analysis objects from NWB + analysis file
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from allensdk.brain_observatory.locally_sparse_noise import LocallySparseNoise | |
from allensdk.core.brain_observatory_cache import BrainObservatoryCache | |
import allensdk.brain_observatory.stimulus_info as stiminfo | |
experiment_id = 12345 # dummy id | |
analysis_file = '/path/to/analysis.h5' | |
boc = BrainObservatoryCache(manifest_file='boc/manifest.json') | |
data_set = boc.get_ophys_experiment_data(experiment_id) | |
# if it's one of the newer experiments, use si.LOCALLY_SPARSE_4DEG | |
# or si.LOCALLY_SPARSE_NOISE_8DEG instead | |
lsn = LocallySparseNoise.from_analysis_file(data_set, | |
analysis_file, | |
si.LOCALLY_SPARSE_NOISE) |
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