dyf

import matplotlib.pyplot as plt
import imageio
import numpy as np
from scipy.signal import medfilt

# from here
# https://www.nasa.gov/multimedia/imagegallery/image_feature_539.html
im = imageio.imread('jupiter_bottom.jpg')
off = [16,-1]
rtrim = 200

dyf

import matplotlib.pyplot as plt
import numpy as np
import matplotlib.patches as mpatch
from matplotlib.collections import PatchCollection
import matplotlib.colors as mcolors
import matplotlib.colorbar 
import matplotlib.gridspec as gridspec

def mega_paw_plot(sdata_list=None, sdata_bg_list=None, cdata_list=None, 
                  cmap=None, clim=None, 

dyf

from allensdk.core.mouse_connectivity_cache import MouseConnectivityCache
mcc = MouseConnectivityCache(manifest_file="/data/dynamic-brain-workshop/mouse_connectivity_cache/manifest.json",
                             resolution=10)
tv, _ = mcc.get_template_volume()
fig, ax = plt.subplots(figsize=(10,10))
plt.imshow(tv[:,515,:], cmap='gray')
plt.show()

dyf

from allensdk.api.queries.rma_api import RmaApi
import allensdk.core.json_utilities as ju


all_structs = []

root = RmaApi().model_query("Structure", criteria="[graph_id$eq1],[acronym$eqgrey]")[0]

all_structs.append(root)