(partial) EasyBuild log for failed build of /scratch/edmondac-admin/eb-n8oE45/files_pr9519/r/R/R-3.6.2-foss-2019b.eb (PR #9519)

R-3.6.2-foss-2019b_partial.log

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moduleclass = 'lang'

== 2019-12-18 18:01:17,226 parser.py:139 INFO Type checking of easyconfig parameter values passed!
== 2019-12-18 18:01:17,228 easyconfig.py:588 INFO setting easyconfig parameter builddependencies: value [('pkg-config', '0.29.2')] (type: <type 'list'>)
== 2019-12-18 18:01:17,228 easyconfig.py:588 INFO setting easyconfig parameter checksums: value ['bd65a45cddfb88f37370fbcee4ac8dd3f1aebeebe47c2f968fd9770ba2bbc954'] (type: <type 'list'>)
== 2019-12-18 18:01:17,228 easyconfig.py:588 INFO setting easyconfig parameter configopts: value --with-pic --enable-threads --enable-R-shlib --with-recommended-packages=no (type: <type 'str'>)
== 2019-12-18 18:01:17,228 easyconfig.py:588 INFO setting easyconfig parameter dependencies: value [('X11', '20190717'), ('Mesa', '19.1.7'), ('libGLU', '9.0.1'), ('cairo', '1.16.0'), ('libreadline', '8.0'), ('ncurses', '6.1'), ('bzip2', '1.0.8'), ('XZ', '5.2.4'), ('zlib', '1.2.11'), ('SQLite', '3.29.0'), ('PCRE', '8.43'), ('libpng', '1.6.37'), ('libjpeg-turbo', '2.0.3'), ('LibTIFF', '4.0.10'), ('Java', '11', '', True), ('Tk', '8.6.9'), ('cURL', '7.66.0'), ('libxml2', '2.9.9'), ('GMP', '6.1.2'), ('NLopt', '2.6.1'), ('FFTW', '3.3.8'), ('libsndfile', '1.0.28'), ('ICU', '64.2'), ('HDF5', '1.10.5'), ('UDUNITS', '2.2.26'), ('GSL', '2.6'), ('ImageMagick', '7.0.9-5')] (type: <type 'list'>)
== 2019-12-18 18:01:17,228 easyconfig.py:588 INFO setting easyconfig parameter description: value R is a free software environment for statistical computing
 and graphics. (type: <type 'str'>)
== 2019-12-18 18:01:17,228 easyconfig.py:588 INFO setting easyconfig parameter easybuild_version: value 3.5.0 (type: <type 'str'>)
== 2019-12-18 18:01:17,228 easyconfig.py:588 INFO setting easyconfig parameter exts_default_options: value {'source_tmpl': '%(name)s_%(version)s.tar.gz', 'source_urls': ['https://cran.r-project.org/src/contrib/Archive/%(name)s', 'https://cran.r-project.org/src/contrib/', 'https://cran.freestatistics.org/src/contrib']} (type: <type 'dict'>)
== 2019-12-18 18:01:17,228 easyconfig.py:588 INFO setting easyconfig parameter exts_list: value ['base', 'datasets', 'graphics', 'grDevices', 'grid', 'methods', 'splines', 'stats', 'stats4', 'tools', 'utils', ('Rmpi', '0.6-9', {'checksums': ['b2e1eac3e56f6b26c7ce744b29d8994ab6507ac88df64ebbb5af439414651ee6']}), ('abind', '1.4-5', {'checksums': ['3a3ace5afbcb86e56889efcebf3bf5c3bb042a282ba7cc4412d450bb246a3f2c']}), ('magic', '1.5-9', {'checksums': ['fa1d5ef2d39e880f262d31b77006a2a7e76ea38e306aae4356e682b90d6cd56a']}), ('Rcpp', '1.0.3', {'checksums': ['2b3500dd3aca16f7b3cb5442625e76dcf4f7c974b4249d33041e9184a5ff030e']}), ('RcppProgress', '0.4.1', {'checksums': ['11764105922f763d4c75c502599ec7dcc2fd629a029964caf53f98b41d0c607a']}), ('lpSolve', '5.6.13.3', {'checksums': ['e64165428c40d730f7686d233c22936bf4b3b91a618a600bdf87acaa905f5ff5']}), ('linprog', '0.9-2', {'checksums': ['8937b2e30692e38de1713f1513b78f505f73da6f5b4a576d151ad60bac2221ce']}), ('geometry', '0.4.5', {'checksums': ['8fedd17c64468721d398e3c17a39706321ab71098b29f5e8d8039dd115a220d8']}), ('bit', '1.1-14', {'checksums': ['5cbaace1fb643a665a6ca69b90f7a6d624270de82420ca7a44f306753fcef254']}), ('filehash', '2.4-2', {'checksums': ['b6d056f75d45e315943a4618f5f62802612cd8931ba3f9f474b595140a3cfb93']}), ('ff', '2.2-14', {'checksums': ['1c6307847275b1b8ad9e2ffdce3f4df3c9d955dc2e8a45e3fd7bfd2b0926e2f0']}), ('bnlearn', '4.5', {'checksums': ['a8047625533260a855d309b3c0785cbeec0f9ec13f284b6664a1f61638138578']}), ('bootstrap', '2019.6', {'checksums': ['5252fdfeb944cf1fae35016d35f9333b1bd1fc8c6d4a14e33901160e21968694']}), ('combinat', '0.0-8', {'checksums': ['1513cf6b6ed74865bfdd9f8ca58feae12b62f38965d1a32c6130bef810ca30c1']}), ('deal', '1.2-39', {'checksums': ['a349db8f1c86cbd8315c068da49314ce9eb585dbb50d2e5ff09300506bd8806b']}), ('fdrtool', '1.2.15', {'checksums': ['65f964aa768d0703ceb7a199adc5e79ca79a6d29d7bc053a262eb533697686c0']}), ('formatR', '1.7', {'checksums': ['a366621b3ff5f8e86a499b6f87858ad47eefdace138341b1377ecc307a5e5ddb']}), ('gtools', '3.8.1', {'checksums': ['051484459bd8ad1b03425b8843d24f6828fea18f7357cfa1c192198cc3f4ba38']}), ('gdata', '2.18.0', {'checksums': ['4b287f59f5bbf5fcbf18db16477852faac4a605b10c5284c46b93fa6e9918d7f']}), ('GSA', '1.03.1', {'checksums': ['e192d4383f53680dbd556223ea5f8cad6bae62a80a337ba5fd8d05a8aee6a917']}), ('highr', '0.8', {'checksums': ['4bd01fba995f68c947a99bdf9aca15327a5320151e10bd0326fad50a6d8bc657']}), ('infotheo', '1.2.0', {'checksums': ['9b47ebc3db5708c88dc014b4ffec6734053a9c255a9241fcede30fec3e63aaa3']}), ('lars', '1.2', {'checksums': ['64745b568f20b2cfdae3dad02fba92ebf78ffee466a71aaaafd4f48c3921922e']}), ('lazy', '1.2-16', {'checksums': ['c796c8b987ed1bd9dfddd593e17312ed681fc4fa3a1ecfe51da2def0ac1e50df']}), ('kernlab', '0.9-29', {'checksums': ['c3da693a0041dd34f869e7b63a8d8cf7d4bc588ac601bcdddcf7d44f68b3106f']}), ('mime', '0.7', {'checksums': 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['c375068c1877c2e8cdc5601cfd5a9c821645c3dff90ddef64817f788f372e179']}), ('mcmc', '0.9-6', {'checksums': ['443a189fff907830627029dd55d925db9a70562d8bda7bfae97414ab955186b9']}), ('MCMCpack', '1.4-5', {'checksums': ['da949cfa44f71bfff1c6ae06caf8fe4252dd6391aa4c8f0fb6e02c7d6b1cdfb5']}), ('shinythemes', '1.1.2', {'checksums': ['2e13d4d5317fc61082e8f3128b15e0b10ed9736ce81e152dd7ae7f6109f9b18a']}), ('csSAM', '1.2.4', {'checksums': ['3d6442ad8c41fa84633cbbc275cd67e88490a160927a5c55d29da55a36e148d7']}), ('bridgedist', '0.1.0', {'checksums': ['dc7c1c8874d6cfa34d550d9af194389e13471dfbc55049a1ab66db112fbf1343']}), ('asnipe', '1.1.12', {'checksums': ['3a1f166f1c71b5877a2acca1384ec6c9b430b67af67ef26125f2abbb53c66206']}), ('liquidSVM', '1.2.4', {'checksums': ['15a9c7f2930e2ed3f4c5bcd9b042884ea580d2b2e52e1c68041600c196046aba']}), ('oddsratio', '2.0.0', {'checksums': ['89bf3c68a6ded6a98f4ee8d487c29605ad00ac5f8db9b8bf1a52144e65332553']}), ('mltools', '0.3.5', {'checksums': 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['094b8f51719cc36ddc56e3412dbb146eafc93c5e8fbb2c5999c2e80ea7a7d216']}), ('GenSA', '1.1.7', {'checksums': ['9d99d3d0a4b7770c3c3a6de44206811272d78ab94481713a8c369f7d6ae7b80f']}), ('rematch2', '2.1.0', {'checksums': ['78677071bd44b40e562df1da6f0c6bdeae44caf973f97ff8286b8c994db59f01']}), ('parsedate', '1.2.0', {'checksums': ['39ab3c507cb3efcd677c6cf453f46d6b1948662bd70c7765845e755ea1e1633d']}), ('circular', '0.4-93', {'checksums': ['76cee2393757390ad91d3db3e5aeb2c2d34c0a46822b7941498571a473417142']}), ('cobs', '1.3-3', {'checksums': ['6b1e760cf8dec6b6e63f042cdc3e5e633de5f982e8bc743a891932f6d9f91bdf']}), ('resample', '0.4', {'checksums': ['f0d5f735e1b812612720845d79167a19f713a438fd10a6a3206e667045fd93e5']}), ('MIIVsem', '0.5.4', {'checksums': ['de918d6b1820c59a7d4324342ad15444c2370ce1d843397a136c307397ed64b9']}), ('medflex', '0.6-6', {'checksums': ['b9d04fb5281d0ea0555ec4f327a0ee951a7f312a3af944578dc175183dc49211']}), ('Rserve', '1.7-3.1', {'checksums': ['3ba1e919706e16a8632def5f45d666b6e44eafa6c14b57064d6ddf3415038f99']}), ('spls', '2.2-3', {'checksums': ['bbd693da80487eef2939c37aba199f6d811ec289828c763d9416a05fa202ab2e']}), ('Boruta', '6.0.0', {'checksums': ['1c9a7aabe09f040e147f6c614f5fe1d0b951d3b0f0024161fbb4c31da8fae8de']}), ('dr', '3.0.10', {'checksums': ['ce523c1bdb62a9dda30afc12b1dd96975cc34695c61913012236f3b80e24bf36']}), ('CovSel', '1.2.1', {'checksums': ['b375d00cc567e125ff106b4357654f43bba3abcadeed2238b6dea4b7a68fda09']}), ('tmle', '1.4.0.1', {'checksums': ['075e7b7fe0496e02785eb35aed0db84476db756c6f14a0047808af2565b33501']}), ('ctmle', '0.1.2', {'checksums': ['e3fa0722cd87aa0e0b209c2dddf3fc44c6d09993f1e66a6c43285fe950948161']}), ('BayesPen', '1.0', {'checksums': ['772df9ae12cd8a3da1d5b7d1f1629602c7693f0eb03945784df2809e2bb061b0']}), ('inline', '0.3.15', {'checksums': ['ff043fe13c1991a3b285bed256ff4a9c0ba10bee764225a34b285875b7d69c68']}), ('BMA', '3.18.11', {'checksums': ['bf4ce8fdb21a4da754dffa4c1869efb11f6bdcfaa7f43a1b009b2695f553698d']}), ('BCEE', '1.2', {'checksums': ['0b1183458d625ef5dd0962fc77ca1326e77754a2c04be11fb002057abcb65a22']}), ('bacr', '1.0.1', {'checksums': ['c847272e2c03fd08ed79b3b739f57fe881af77404b6fd087caa0c398c90ef993']}), ('clue', '0.3-57', {'checksums': ['6e369d07b464a9624209a06b5078bf988f01f7963076e946649d76aea0622d17']}), ('bdsmatrix', '1.3-3', {'checksums': ['70ea81708c97dedd483a5d3866d2e906fa0e9098ff854c41cf0746fbc8dfad9d']}), ('fftwtools', '0.9-8', {'checksums': ['4641c8cd70938c2a8bde0b6da6cf7f83e96175ef52f1ca42ec3920a1dabf1bdb']}), ('imagerExtra', '1.3.2', {'checksums': ['0ebfa1eabb89459d774630ab73c7a97a93b9481ea5afc55482975475acebd5b8']}), ('MALDIquant', '1.19.3', {'checksums': ['a730327c1f8d053d29e558636736b7b66d0671a009e0004720b869d2c76ff32c']}), ('threejs', '0.3.1', {'checksums': ['71750b741672a435ecf749b69c72f0681aa8bb795e317f4e3056d5e33f6d79e8']}), ('LaplacesDemon', '16.1.1', {'checksums': ['779ed1dbfed523a15701b4d5d891d4f1f11ab27518826a8a7725807d4c42bd77']}), ('rda', '1.0.2-2.1', {'checksums': ['6918b62f51252b57f2c05b99debef6136b370f594dc3ae6466268e4c35578ef8']}), ('sampling', '2.8', {'checksums': ['356923f35971bb55f7e97b178aede3366374aa3ad3d24a97be765660553bf21a']}), ('lda', '1.4.2', {'checksums': ['5606a1e1bc24706988853528023f7a004c725791ae1a7309f1aea2fc6681240f']}), ('jiebaRD', '0.1', {'checksums': ['045ee670f5378fe325a45b40fd55136b355cbb225e088cb229f512c51abb4df1']}), ('jiebaR', '0.11', {'checksums': ['adde8b0b21c01ec344735d49cd33929511086719c99f8e10dce4ca9479276623']}), ('hdm', '0.3.1', {'checksums': ['ba087565e9e0a8ea30a6095919141895fd76b7f3c05a03e60e9e24e602732bce']}), ('abe', '3.0.1', {'checksums': ['66d2e9ac78ba64b7d27b22b647fc00378ea832f868e51c18df50d6fffb8029b8']}), ('SignifReg', '2.1', {'checksums': ['d21959ce5b1ee20efd1483f6020b57e5f6616bd525af77a7bd325501cc670606']}), ('bbmle', '1.0.20', {'checksums': ['6c0fe8df7243f8a039e62d14014065df2002b9329c0e8a3c2df4e7ccf591f1f7']}), ('emdbook', '1.3.11', {'checksums': ['f848d4c0a2da50dc8a5af76429d8f9d4960dee3fad1e98f7b507bdfd9b2ca128']}), ('SOAR', '0.99-11', {'checksums': ['d5a0fba3664087308ce5295a1d57d10bad149eb9771b4fe67478deae4b7f68d8']}), ('rasterVis', '0.47', {'checksums': ['123ebe870895c2ba3a4b64d8a18bccab5287c831fa14bb0fe07f0d7de61e51d3']}), ('tictoc', '1.0', {'checksums': ['47da097c1822caa2d8e262381987cfa556ad901131eb96109752742526b2e2fe']}), ('ISOcodes', '2019.04.22', {'checksums': ['2386440c3bed8391ee3a029aab86c107d435d0dd6a970236512d7c105d146b6e']}), ('stopwords', '1.0', {'checksums': ['9b727a5d827ac8dcfa6329140d294dcf964a06d80132b4ca434330d0ee02b1da']}), ('janeaustenr', '0.1.5', {'checksums': ['992f6673653daf7010fe176993a01cd4127d9a88be428da8da7a28241826d6f3']}), ('SnowballC', '0.6.0', {'checksums': ['61617d344444235940f5b9ac1cd6b86938e74a8c76791235724b16b755c3f72c']}), ('tokenizers', '0.2.1', {'checksums': ['28617cdc5ddef5276abfe14a2642999833322b6c34697de1d4e9d6dc7670dd00']}), ('hunspell', '3.0', {'checksums': ['01fb9c87f7cf094aaad3b7098378134f2e503286224351e91d08c00b6ee19857']}), ('topicmodels', '0.2-9', {'checksums': ['40770fb7de6ab6bd6e3ef6a0c777fa6db65d0322e67503c26c84ea857ac9a79c']}), ('tidytext', '0.2.2', {'checksums': ['188f294cf3177fe6fc85e9b7e16a05211cebeab0e0f7b05a9443416790bf2ec0']}), ('splitstackshape', '1.4.8', {'checksums': ['656032c3f1e3dd5b8a3ee19ffcae617e07104c0e342fc3da4d863637a770fe56']}), ('grImport2', '0.2-0', {'checksums': ['a102a2d877e42cd4e4e346e5510a77b2f3e57b43ae3c6d5c272fdceb506b00a7']}), ('preseqR', '4.0.0', {'checksums': ['0143db473fb9a811f9cf582a348226a5763e62d9857ce3ef4ec41412abb559bc']}), ('idr', '1.2', {'checksums': ['8bbfdf82c8c2b5c73eb079127e198b6cb65c437bb36729f502c7bcd6037fdb16']}), ('entropy', '1.2.1', {'checksums': ['edb27144b8f855f1ef21de6b93b6b6c5cf7d4f2c3d592bf625e5158c02226f83']}), ('kedd', '1.0.3', {'checksums': ['38760abd8c8e8f69ad85ca7992803060acc44ce68358de1763bd2415fdf83c9f']})] (type: <type 'list'>)
== 2019-12-18 18:01:17,232 easyconfig.py:588 INFO setting easyconfig parameter homepage: value https://www.r-project.org/ (type: <type 'str'>)
== 2019-12-18 18:01:17,232 easyconfig.py:588 INFO setting easyconfig parameter moduleclass: value lang (type: <type 'str'>)
== 2019-12-18 18:01:17,232 easyconfig.py:588 INFO setting easyconfig parameter name: value R (type: <type 'str'>)
== 2019-12-18 18:01:17,232 easyconfig.py:588 INFO setting easyconfig parameter osdependencies: value [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] (type: <type 'list'>)
== 2019-12-18 18:01:17,232 easyconfig.py:588 INFO setting easyconfig parameter source_urls: value ['https://cloud.r-project.org/src/base/R-%(version_major)s'] (type: <type 'list'>)
== 2019-12-18 18:01:17,232 easyconfig.py:588 INFO setting easyconfig parameter sources: value ['%(name)s-%(version)s.tar.gz'] (type: <type 'list'>)
== 2019-12-18 18:01:17,232 easyconfig.py:588 INFO setting easyconfig parameter toolchain: value {'version': '2019b', 'name': 'foss'} (type: <type 'dict'>)
== 2019-12-18 18:01:17,233 easyconfig.py:588 INFO setting easyconfig parameter version: value 3.6.2 (type: <type 'str'>)
== 2019-12-18 18:01:17,233 easyconfig.py:653 INFO Parsing dependency specifications...
== 2019-12-18 18:01:17,235 easyconfig.py:2079 INFO Minimally resolving dependency {'external_module_metadata': {}, 'short_mod_name': None, 'toolchain': {'version': '2019b', 'name': 'foss'}, 'name': 'pkg-config', 'full_mod_name': None, 'system': False, 'build_only': True, 'versionsuffix': '', 'version': '0.29.2', 'toolchain_inherited': True, 'hidden': False, 'external_module': False} using toolchain {'version': '8.3.0', 'name': 'GCCcore'}
== 2019-12-18 18:01:17,237 easyconfig.py:2079 INFO Minimally resolving dependency {'external_module_metadata': {}, 'short_mod_name': None, 'toolchain': {'version': '2019b', 'name': 'foss'}, 'name': 'X11', 'full_mod_name': None, 'system': False, 'build_only': False, 'versionsuffix': '', 'version': '20190717', 'toolchain_inherited': True, 'hidden': False, 'external_module': False} using toolchain {'version': '8.3.0', 'name': 'GCCcore'}
== 2019-12-18 18:01:17,238 easyconfig.py:2079 INFO Minimally resolving dependency {'external_module_metadata': {}, 'short_mod_name': None, 'toolchain': {'version': '2019b', 'name': 'foss'}, 'name': 'Mesa', 'full_mod_name': None, 'system': False, 'build_only': False, 'versionsuffix': '', 'version': '19.1.7', 'toolchain_inherited': True, 'hidden': False, 'external_module': False} using toolchain {'version': '8.3.0', 'name': 'GCCcore'}
== 2019-12-18 18:01:17,239 easyconfig.py:2079 INFO Minimally resolving dependency {'external_module_metadata': {}, 'short_mod_name': None, 'toolchain': {'version': '2019b', 'name': 'foss'}, 'name': 'libGLU', 'full_mod_name': None, 'system': False, 'build_only': False, 'versionsuffix': '', 'version': '9.0.1', 'toolchain_inherited': True, 'hidden': False, 'external_module': False} using toolchain {'version': '8.3.0', 'name': 'GCCcore'}
== 2019-12-18 18:01:17,241 easyconfig.py:2079 INFO Minimally resolving dependency {'external_module_metadata': {}, 'short_mod_name': None, 'toolchain': {'version': '2019b', 'name': 'foss'}, 'name': 'cairo', 'full_mod_name': None, 'system': False, 'build_only': False, 'versionsuffix': '', 'version': '1.16.0', 'toolchain_inherited': True, 'hidden': False, 'external_module': False} using toolchain {'version': '8.3.0', 'name': 'GCCcore'}
== 2019-12-18 18:01:17,242 easyconfig.py:2079 INFO Minimally resolving dependency {'external_module_metadata': {}, 'short_mod_name': None, 'toolchain': {'version': '2019b', 'name': 'foss'}, 'name': 'libreadline', 'full_mod_name': None, 'system': False, 'build_only': False, 'versionsuffix': '', 'version': '8.0', 'toolchain_inherited': True, 'hidden': False, 'external_module': False} using toolchain {'version': '8.3.0', 'name': 'GCCcore'}
== 2019-12-18 18:01:17,243 easyconfig.py:2079 INFO Minimally resolving dependency {'external_module_metadata': {}, 'short_mod_name': None, 'toolchain': {'version': '2019b', 'name': 'foss'}, 'name': 'ncurses', 'full_mod_name': None, 'system': False, 'build_only': False, 'versionsuffix': '', 'version': '6.1', 'toolchain_inherited': True, 'hidden': False, 'external_module': False} using toolchain {'version': '8.3.0', 'name': 'GCCcore'}
== 2019-12-18 18:01:17,245 easyconfig.py:2079 INFO Minimally resolving dependency {'external_module_metadata': {}, 'short_mod_name': None, 'toolchain': {'version': '2019b', 'name': 'foss'}, 'name': 'bzip2', 'full_mod_name': None, 'system': False, 'build_only': False, 'versionsuffix': '', 'version': '1.0.8', 'toolchain_inherited': True, 'hidden': False, 'external_module': False} using toolchain {'version': '8.3.0', 'name': 'GCCcore'}
== 2019-12-18 18:01:17,246 easyconfig.py:2079 INFO Minimally resolving dependency {'external_module_metadata': {}, 'short_mod_name': None, 'toolchain': {'version': '2019b', 'name': 'foss'}, 'name': 'XZ', 'full_mod_name': None, 'system': False, 'build_only': False, 'versionsuffix': '', 'version': '5.2.4', 'toolchain_inherited': True, 'hidden': False, 'external_module': False} using toolchain {'version': '8.3.0', 'name': 'GCCcore'}
== 2019-12-18 18:01:17,247 easyconfig.py:2079 INFO Minimally resolving dependency {'external_module_metadata': {}, 'short_mod_name': None, 'toolchain': {'version': '2019b', 'name': 'foss'}, 'name': 'zlib', 'full_mod_name': None, 'system': False, 'build_only': False, 'versionsuffix': '', 'version': '1.2.11', 'toolchain_inherited': True, 'hidden': False, 'external_module': False} using toolchain {'version': '8.3.0', 'name': 'GCCcore'}
== 2019-12-18 18:01:17,249 easyconfig.py:2079 INFO Minimally resolving dependency {'external_module_metadata': {}, 'short_mod_name': None, 'toolchain': {'version': '2019b', 'name': 'foss'}, 'name': 'SQLite', 'full_mod_name': None, 'system': False, 'build_only': False, 'versionsuffix': '', 'version': '3.29.0', 'toolchain_inherited': True, 'hidden': False, 'external_module': False} using toolchain {'version': '8.3.0', 'name': 'GCCcore'}
== 2019-12-18 18:01:17,250 easyconfig.py:2079 INFO Minimally resolving dependency {'external_module_metadata': {}, 'short_mod_name': None, 'toolchain': {'version': '2019b', 'name': 'foss'}, 'name': 'PCRE', 'full_mod_name': None, 'system': False, 'build_only': False, 'versionsuffix': '', 'version': '8.43', 'toolchain_inherited': True, 'hidden': False, 'external_module': False} using toolchain {'version': '8.3.0', 'name': 'GCCcore'}
== 2019-12-18 18:01:17,251 easyconfig.py:2079 INFO Minimally resolving dependency {'external_module_metadata': {}, 'short_mod_name': None, 'toolchain': {'version': '2019b', 'name': 'foss'}, 'name': 'libpng', 'full_mod_name': None, 'system': False, 'build_only': False, 'versionsuffix': '', 'version': '1.6.37', 'toolchain_inherited': True, 'hidden': False, 'external_module': False} using toolchain {'version': '8.3.0', 'name': 'GCCcore'}
== 2019-12-18 18:01:17,253 easyconfig.py:2079 INFO Minimally resolving dependency {'external_module_metadata': {}, 'short_mod_name': None, 'toolchain': {'version': '2019b', 'name': 'foss'}, 'name': 'libjpeg-turbo', 'full_mod_name': None, 'system': False, 'build_only': False, 'versionsuffix': '', 'version': '2.0.3', 'toolchain_inherited': True, 'hidden': False, 'external_module': False} using toolchain {'version': '8.3.0', 'name': 'GCCcore'}
== 2019-12-18 18:01:17,254 easyconfig.py:2079 INFO Minimally resolving dependency {'external_module_metadata': {}, 'short_mod_name': None, 'toolchain': {'version': '2019b', 'name': 'foss'}, 'name': 'LibTIFF', 'full_mod_name': None, 'system': False, 'build_only': False, 'versionsuffix': '', 'version': '4.0.10', 'toolchain_inherited': True, 'hidden': False, 'external_module': False} using toolchain {'version': '8.3.0', 'name': 'GCCcore'}
== 2019-12-18 18:01:17,256 easyconfig.py:2079 INFO Minimally resolving dependency {'external_module_metadata': {}, 'short_mod_name': None, 'toolchain': {'version': '2019b', 'name': 'foss'}, 'name': 'Tk', 'full_mod_name': None, 'system': False, 'build_only': False, 'versionsuffix': '', 'version': '8.6.9', 'toolchain_inherited': True, 'hidden': False, 'external_module': False} using toolchain {'version': '8.3.0', 'name': 'GCCcore'}
== 2019-12-18 18:01:17,257 easyconfig.py:2079 INFO Minimally resolving dependency {'external_module_metadata': {}, 'short_mod_name': None, 'toolchain': {'version': '2019b', 'name': 'foss'}, 'name': 'cURL', 'full_mod_name': None, 'system': False, 'build_only': False, 'versionsuffix': '', 'version': '7.66.0', 'toolchain_inherited': True, 'hidden': False, 'external_module': False} using toolchain {'version': '8.3.0', 'name': 'GCCcore'}
== 2019-12-18 18:01:17,258 easyconfig.py:2079 INFO Minimally resolving dependency {'external_module_metadata': {}, 'short_mod_name': None, 'toolchain': {'version': '2019b', 'name': 'foss'}, 'name': 'libxml2', 'full_mod_name': None, 'system': False, 'build_only': False, 'versionsuffix': '', 'version': '2.9.9', 'toolchain_inherited': True, 'hidden': False, 'external_module': False} using toolchain {'version': '8.3.0', 'name': 'GCCcore'}
== 2019-12-18 18:01:17,260 easyconfig.py:2079 INFO Minimally resolving dependency {'external_module_metadata': {}, 'short_mod_name': None, 'toolchain': {'version': '2019b', 'name': 'foss'}, 'name': 'GMP', 'full_mod_name': None, 'system': False, 'build_only': False, 'versionsuffix': '', 'version': '6.1.2', 'toolchain_inherited': True, 'hidden': False, 'external_module': False} using toolchain {'version': '8.3.0', 'name': 'GCCcore'}
== 2019-12-18 18:01:17,261 easyconfig.py:2079 INFO Minimally resolving dependency {'external_module_metadata': {}, 'short_mod_name': None, 'toolchain': {'version': '2019b', 'name': 'foss'}, 'name': 'NLopt', 'full_mod_name': None, 'system': False, 'build_only': False, 'versionsuffix': '', 'version': '2.6.1', 'toolchain_inherited': True, 'hidden': False, 'external_module': False} using toolchain {'version': '8.3.0', 'name': 'GCCcore'}
== 2019-12-18 18:01:17,262 easyconfig.py:2079 INFO Minimally resolving dependency {'external_module_metadata': {}, 'short_mod_name': None, 'toolchain': {'version': '2019b', 'name': 'foss'}, 'name': 'FFTW', 'full_mod_name': None, 'system': False, 'build_only': False, 'versionsuffix': '', 'version': '3.3.8', 'toolchain_inherited': True, 'hidden': False, 'external_module': False} using toolchain {'version': '2019b', 'name': 'gompi'}
== 2019-12-18 18:01:17,263 easyconfig.py:2079 INFO Minimally resolving dependency {'external_module_metadata': {}, 'short_mod_name': None, 'toolchain': {'version': '2019b', 'name': 'foss'}, 'name': 'libsndfile', 'full_mod_name': None, 'system': False, 'build_only': False, 'versionsuffix': '', 'version': '1.0.28', 'toolchain_inherited': True, 'hidden': False, 'external_module': False} using toolchain {'version': '8.3.0', 'name': 'GCCcore'}
== 2019-12-18 18:01:17,265 easyconfig.py:2079 INFO Minimally resolving dependency {'external_module_metadata': {}, 'short_mod_name': None, 'toolchain': {'version': '2019b', 'name': 'foss'}, 'name': 'ICU', 'full_mod_name': None, 'system': False, 'build_only': False, 'versionsuffix': '', 'version': '64.2', 'toolchain_inherited': True, 'hidden': False, 'external_module': False} using toolchain {'version': '8.3.0', 'name': 'GCCcore'}
== 2019-12-18 18:01:17,266 easyconfig.py:2079 INFO Minimally resolving dependency {'external_module_metadata': {}, 'short_mod_name': None, 'toolchain': {'version': '2019b', 'name': 'foss'}, 'name': 'HDF5', 'full_mod_name': None, 'system': False, 'build_only': False, 'versionsuffix': '', 'version': '1.10.5', 'toolchain_inherited': True, 'hidden': False, 'external_module': False} using toolchain {'version': '2019b', 'name': 'gompi'}
== 2019-12-18 18:01:17,267 easyconfig.py:2079 INFO Minimally resolving dependency {'external_module_metadata': {}, 'short_mod_name': None, 'toolchain': {'version': '2019b', 'name': 'foss'}, 'name': 'UDUNITS', 'full_mod_name': None, 'system': False, 'build_only': False, 'versionsuffix': '', 'version': '2.2.26', 'toolchain_inherited': True, 'hidden': False, 'external_module': False} using toolchain {'version': '8.3.0', 'name': 'GCCcore'}
== 2019-12-18 18:01:17,269 easyconfig.py:2079 INFO Minimally resolving dependency {'external_module_metadata': {}, 'short_mod_name': None, 'toolchain': {'version': '2019b', 'name': 'foss'}, 'name': 'GSL', 'full_mod_name': None, 'system': False, 'build_only': False, 'versionsuffix': '', 'version': '2.6', 'toolchain_inherited': True, 'hidden': False, 'external_module': False} using toolchain {'version': '8.3.0', 'name': 'GCC'}
== 2019-12-18 18:01:17,270 easyconfig.py:2079 INFO Minimally resolving dependency {'external_module_metadata': {}, 'short_mod_name': None, 'toolchain': {'version': '2019b', 'name': 'foss'}, 'name': 'ImageMagick', 'full_mod_name': None, 'system': False, 'build_only': False, 'versionsuffix': '', 'version': '7.0.9-5', 'toolchain_inherited': True, 'hidden': False, 'external_module': False} using toolchain {'version': '8.3.0', 'name': 'GCCcore'}
== 2019-12-18 18:01:17,338 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/R/3.6.2-foss-2019b/lib64/R/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/R/3.6.2-foss-2019b/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/ImageMagick/7.0.9-5-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/LittleCMS/2.9-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/JasPer/2.0.14-GCCcore-8.3.0/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/Ghostscript/9.50-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/GSL/2.6-GCC-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/UDUNITS/2.2.26-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/HDF5/1.10.5-gompi-2019b/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/Szip/2.1.1-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/ICU/64.2-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/libsndfile/1.0.28-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/NLopt/2.6.1-GCCcore-8.3.0/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/cURL/7.66.0-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/Tk/8.6.9-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/Java/11.0.2/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/LibTIFF/4.0.10-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/libjpeg-turbo/2.0.3-GCCcore-8.3.0/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/SQLite/3.29.0-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/libreadline/8.0-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/cairo/1.16.0-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/GLib/2.62.0-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/PCRE/8.43-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/gettext/0.20.1-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/libffi/3.2.1-GCCcore-8.3.0/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/libffi/3.2.1-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/pixman/0.38.4-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/libGLU/9.0.1-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/Mesa/19.1.7-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/libunwind/1.3.1-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/LLVM/9.0.0-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/libdrm/2.4.99-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/nettle/3.5.1-GCCcore-8.3.0/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/GMP/6.1.2-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/X11/20190717-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/fontconfig/2.13.1-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/util-linux/2.34-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/ncurses/6.1-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/freetype/2.10.1-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/libpng/1.6.37-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/expat/2.2.7-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/bzip2/1.0.8-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenMPI/3.1.4-GCC-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/hwloc/1.11.12-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/libpciaccess/0.14-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/libxml2/2.9.9-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/XZ/5.2.4-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/numactl/2.0.12-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/binutils/2.32-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/zlib/1.2.11-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/lib (previous value: 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== 2019-12-18 18:01:17,338 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2019-12-18 18:01:17,341 toolchain.py:704 INFO List of toolchain dependency modules and toolchain definition match!
== 2019-12-18 18:01:17,344 options.py:89 WARNING option: option with name _opt_CC returns None
== 2019-12-18 18:01:17,344 options.py:89 WARNING option: option with name _opt_CXX returns None
== 2019-12-18 18:01:17,344 options.py:89 WARNING option: option with name _opt_F77 returns None
== 2019-12-18 18:01:17,345 options.py:89 WARNING option: option with name _opt_F90 returns None
== 2019-12-18 18:01:17,345 options.py:89 WARNING option: option with name _opt_FC returns None
== 2019-12-18 18:01:17,346 compiler.py:347 INFO _set_optimal_architecture: using march=native as optarch for x86_64.
== 2019-12-18 18:01:17,358 variables.py:201 WARNING flags_for_subdirs: directory /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/lib64 was not found
== 2019-12-18 18:01:17,363 variables.py:201 WARNING flags_for_subdirs: directory /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/lib64 was not found
== 2019-12-18 18:01:17,368 variables.py:201 WARNING flags_for_subdirs: directory /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/lib64 was not found
== 2019-12-18 18:01:17,371 variables.py:201 WARNING flags_for_subdirs: directory /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/lib64 was not found
== 2019-12-18 18:01:17,375 environment.py:97 INFO Environment variable BLAS_INC_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include')
== 2019-12-18 18:01:17,375 environment.py:97 INFO Environment variable EBVARBLAS_INC_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include')
== 2019-12-18 18:01:17,375 environment.py:97 INFO Environment variable BLAS_LAPACK_INC_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include')
== 2019-12-18 18:01:17,375 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include')
== 2019-12-18 18:01:17,375 environment.py:97 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/lib (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/lib')
== 2019-12-18 18:01:17,375 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/lib (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/lib')
== 2019-12-18 18:01:17,375 environment.py:97 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a')
== 2019-12-18 18:01:17,375 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a')
== 2019-12-18 18:01:17,376 environment.py:97 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a')
== 2019-12-18 18:01:17,376 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a')
== 2019-12-18 18:01:17,376 environment.py:97 INFO Environment variable BLAS_LIB_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/lib (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/lib')
== 2019-12-18 18:01:17,376 environment.py:97 INFO Environment variable EBVARBLAS_LIB_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/lib (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/lib')
== 2019-12-18 18:01:17,376 environment.py:97 INFO Environment variable BLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a')
== 2019-12-18 18:01:17,376 environment.py:97 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a')
== 2019-12-18 18:01:17,376 environment.py:97 INFO Environment variable BLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a')
== 2019-12-18 18:01:17,376 environment.py:97 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a')
== 2019-12-18 18:01:17,376 environment.py:97 INFO Environment variable CC set to gcc (previous value: 'gcc')
== 2019-12-18 18:01:17,376 environment.py:97 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc')
== 2019-12-18 18:01:17,376 environment.py:97 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2019-12-18 18:01:17,376 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2019-12-18 18:01:17,377 environment.py:97 INFO Environment variable CPPFLAGS set to -I/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include (previous value: '-I/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include')
== 2019-12-18 18:01:17,377 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include (previous value: '-I/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include')
== 2019-12-18 18:01:17,377 environment.py:97 INFO Environment variable CXX set to g++ (previous value: 'g++')
== 2019-12-18 18:01:17,377 environment.py:97 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++')
== 2019-12-18 18:01:17,377 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2019-12-18 18:01:17,377 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2019-12-18 18:01:17,377 environment.py:97 INFO Environment variable F77 set to gfortran (previous value: 'gfortran')
== 2019-12-18 18:01:17,377 environment.py:97 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran')
== 2019-12-18 18:01:17,377 environment.py:97 INFO Environment variable F90 set to gfortran (previous value: 'gfortran')
== 2019-12-18 18:01:17,377 environment.py:97 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran')
== 2019-12-18 18:01:17,378 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2019-12-18 18:01:17,378 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2019-12-18 18:01:17,378 environment.py:97 INFO Environment variable FC set to gfortran (previous value: 'gfortran')
== 2019-12-18 18:01:17,378 environment.py:97 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran')
== 2019-12-18 18:01:17,378 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2019-12-18 18:01:17,378 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2019-12-18 18:01:17,378 environment.py:97 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2019-12-18 18:01:17,378 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2019-12-18 18:01:17,378 environment.py:97 INFO Environment variable FFTW_INC_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include')
== 2019-12-18 18:01:17,378 environment.py:97 INFO Environment variable EBVARFFTW_INC_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include')
== 2019-12-18 18:01:17,378 environment.py:97 INFO Environment variable FFTW_LIB_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/lib (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/lib')
== 2019-12-18 18:01:17,378 environment.py:97 INFO Environment variable EBVARFFTW_LIB_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/lib (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/lib')
== 2019-12-18 18:01:17,379 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a')
== 2019-12-18 18:01:17,379 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a')
== 2019-12-18 18:01:17,379 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a')
== 2019-12-18 18:01:17,379 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a')
== 2019-12-18 18:01:17,379 environment.py:97 INFO Environment variable FFT_INC_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include')
== 2019-12-18 18:01:17,379 environment.py:97 INFO Environment variable EBVARFFT_INC_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include')
== 2019-12-18 18:01:17,379 environment.py:97 INFO Environment variable FFT_LIB_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/lib (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/lib')
== 2019-12-18 18:01:17,379 environment.py:97 INFO Environment variable EBVARFFT_LIB_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/lib (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/lib')
== 2019-12-18 18:01:17,379 environment.py:97 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a')
== 2019-12-18 18:01:17,379 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a')
== 2019-12-18 18:01:17,379 environment.py:97 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a')
== 2019-12-18 18:01:17,379 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a')
== 2019-12-18 18:01:17,380 environment.py:97 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran')
== 2019-12-18 18:01:17,380 environment.py:97 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran')
== 2019-12-18 18:01:17,380 environment.py:97 INFO Environment variable LAPACK_INC_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include')
== 2019-12-18 18:01:17,380 environment.py:97 INFO Environment variable EBVARLAPACK_INC_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include')
== 2019-12-18 18:01:17,380 environment.py:97 INFO Environment variable LAPACK_LIB_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/lib (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/lib')
== 2019-12-18 18:01:17,380 environment.py:97 INFO Environment variable EBVARLAPACK_LIB_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/lib (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/lib')
== 2019-12-18 18:01:17,380 environment.py:97 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a')
== 2019-12-18 18:01:17,380 environment.py:97 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a')
== 2019-12-18 18:01:17,380 environment.py:97 INFO Environment variable LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a')
== 2019-12-18 18:01:17,380 environment.py:97 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a')
== 2019-12-18 18:01:17,380 environment.py:97 INFO Environment variable LDFLAGS set to -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/lib -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/lib -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/lib -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/lib64 -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/lib (previous value: '-L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/lib -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/lib -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/lib -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/lib64 -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/lib')
== 2019-12-18 18:01:17,380 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/lib -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/lib -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/lib -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/lib64 -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/lib (previous value: '-L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/lib -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/lib -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/lib -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/lib64 -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/lib')
== 2019-12-18 18:01:17,381 environment.py:97 INFO Environment variable LIBBLAS set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran')
== 2019-12-18 18:01:17,381 environment.py:97 INFO Environment variable EBVARLIBBLAS set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran')
== 2019-12-18 18:01:17,381 environment.py:97 INFO Environment variable LIBBLAS_MT set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran')
== 2019-12-18 18:01:17,381 environment.py:97 INFO Environment variable EBVARLIBBLAS_MT set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran')
== 2019-12-18 18:01:17,381 environment.py:97 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3')
== 2019-12-18 18:01:17,381 environment.py:97 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3')
== 2019-12-18 18:01:17,381 environment.py:97 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread')
== 2019-12-18 18:01:17,381 environment.py:97 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread')
== 2019-12-18 18:01:17,381 environment.py:97 INFO Environment variable LIBLAPACK set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran')
== 2019-12-18 18:01:17,381 environment.py:97 INFO Environment variable EBVARLIBLAPACK set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran')
== 2019-12-18 18:01:17,381 environment.py:97 INFO Environment variable LIBLAPACK_MT set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran')
== 2019-12-18 18:01:17,382 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran')
== 2019-12-18 18:01:17,382 environment.py:97 INFO Environment variable LIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran')
== 2019-12-18 18:01:17,382 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran')
== 2019-12-18 18:01:17,382 environment.py:97 INFO Environment variable LIBLAPACK_ONLY set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran')
== 2019-12-18 18:01:17,382 environment.py:97 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran')
== 2019-12-18 18:01:17,382 environment.py:97 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread')
== 2019-12-18 18:01:17,382 environment.py:97 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread')
== 2019-12-18 18:01:17,382 environment.py:97 INFO Environment variable LIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previous value: '-lscalapack -lopenblas -lgfortran')
== 2019-12-18 18:01:17,382 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previous value: '-lscalapack -lopenblas -lgfortran')
== 2019-12-18 18:01:17,382 environment.py:97 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previous value: '-lscalapack -lopenblas -lpthread -lgfortran')
== 2019-12-18 18:01:17,382 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previous value: '-lscalapack -lopenblas -lpthread -lgfortran')
== 2019-12-18 18:01:17,382 environment.py:97 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran')
== 2019-12-18 18:01:17,383 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran')
== 2019-12-18 18:01:17,383 environment.py:97 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran')
== 2019-12-18 18:01:17,383 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran')
== 2019-12-18 18:01:17,383 environment.py:97 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc')
== 2019-12-18 18:01:17,383 environment.py:97 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc')
== 2019-12-18 18:01:17,383 environment.py:97 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx')
== 2019-12-18 18:01:17,383 environment.py:97 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx')
== 2019-12-18 18:01:17,383 environment.py:97 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort')
== 2019-12-18 18:01:17,383 environment.py:97 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort')
== 2019-12-18 18:01:17,383 environment.py:97 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort')
== 2019-12-18 18:01:17,383 environment.py:97 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort')
== 2019-12-18 18:01:17,383 environment.py:97 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort')
== 2019-12-18 18:01:17,384 environment.py:97 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort')
== 2019-12-18 18:01:17,384 environment.py:97 INFO Environment variable MPI_INC_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenMPI/3.1.4-GCC-8.3.0/include (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenMPI/3.1.4-GCC-8.3.0/include')
== 2019-12-18 18:01:17,384 environment.py:97 INFO Environment variable EBVARMPI_INC_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenMPI/3.1.4-GCC-8.3.0/include (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenMPI/3.1.4-GCC-8.3.0/include')
== 2019-12-18 18:01:17,384 environment.py:97 INFO Environment variable MPI_LIB_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenMPI/3.1.4-GCC-8.3.0/lib (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenMPI/3.1.4-GCC-8.3.0/lib')
== 2019-12-18 18:01:17,384 environment.py:97 INFO Environment variable EBVARMPI_LIB_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenMPI/3.1.4-GCC-8.3.0/lib (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenMPI/3.1.4-GCC-8.3.0/lib')
== 2019-12-18 18:01:17,384 environment.py:97 INFO Environment variable MPI_LIB_SHARED set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenMPI/3.1.4-GCC-8.3.0/lib/libmpi.so (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenMPI/3.1.4-GCC-8.3.0/lib/libmpi.so')
== 2019-12-18 18:01:17,384 environment.py:97 INFO Environment variable EBVARMPI_LIB_SHARED set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenMPI/3.1.4-GCC-8.3.0/lib/libmpi.so (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/OpenMPI/3.1.4-GCC-8.3.0/lib/libmpi.so')
== 2019-12-18 18:01:17,384 environment.py:97 INFO Environment variable MPI_LIB_STATIC set to  (previous value: '')
== 2019-12-18 18:01:17,384 environment.py:97 INFO Environment variable EBVARMPI_LIB_STATIC set to  (previous value: '')
== 2019-12-18 18:01:17,384 environment.py:97 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc')
== 2019-12-18 18:01:17,384 environment.py:97 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc')
== 2019-12-18 18:01:17,385 environment.py:97 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++')
== 2019-12-18 18:01:17,385 environment.py:97 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++')
== 2019-12-18 18:01:17,385 environment.py:97 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran')
== 2019-12-18 18:01:17,385 environment.py:97 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran')
== 2019-12-18 18:01:17,385 environment.py:97 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran')
== 2019-12-18 18:01:17,385 environment.py:97 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran')
== 2019-12-18 18:01:17,385 environment.py:97 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran')
== 2019-12-18 18:01:17,385 environment.py:97 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran')
== 2019-12-18 18:01:17,385 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native')
== 2019-12-18 18:01:17,385 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native')
== 2019-12-18 18:01:17,385 environment.py:97 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno')
== 2019-12-18 18:01:17,385 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno')
== 2019-12-18 18:01:17,386 environment.py:97 INFO Environment variable SCALAPACK_INC_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include')
== 2019-12-18 18:01:17,386 environment.py:97 INFO Environment variable EBVARSCALAPACK_INC_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include')
== 2019-12-18 18:01:17,386 environment.py:97 INFO Environment variable SCALAPACK_LIB_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/lib (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/lib')
== 2019-12-18 18:01:17,386 environment.py:97 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/lib (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/lib')
== 2019-12-18 18:01:17,386 environment.py:97 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a')
== 2019-12-18 18:01:17,386 environment.py:97 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a')
== 2019-12-18 18:01:17,386 environment.py:97 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a')
== 2019-12-18 18:01:17,386 environment.py:97 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a')
== 2019-12-18 18:01:17,386 run.py:219 INFO running cmd: R RHOME 
== 2019-12-18 18:01:17,604 run.py:534 INFO cmd "R RHOME" exited with exit code 0 and output:
/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/R/3.6.2-foss-2019b/lib64/R

== 2019-12-18 18:01:17,606 run.py:219 INFO running cmd:  R CMD INSTALL /rds/bear-sysadmin/configmgmt/easybuild/sources/r/R/extensions/h2o_3.26.0.2.tar.gz   --library=/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/R/3.6.2-foss-2019b/lib64/R/library --no-clean-on-error  
== 2019-12-18 18:26:31,888 build_log.py:164 ERROR EasyBuild crashed with an error (at easybuild/base/exceptions.py:124 in __init__): cmd " R CMD INSTALL /rds/bear-sysadmin/configmgmt/easybuild/sources/r/R/extensions/h2o_3.26.0.2.tar.gz   --library=/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/R/3.6.2-foss-2019b/lib64/R/library --no-clean-on-error " exited with exit code 1 and output:
* installing *source* package h2o ...
** package h2o successfully unpacked and MD5 sums checked
** using staged installation
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
Performing one-time download of h2o.jar from
     http://s3.amazonaws.com/h2o-release/h2o/rel-yau/2/Rjar/h2o.jar 
(This could take a few minutes, please be patient...)
Warning in download.file(url = h2o_url, destfile = temp_file, mode = "wb",  :
  downloaded length 3670024 != reported length 131104921
Warning in download.file(url = h2o_url, destfile = temp_file, mode = "wb",  :
  URL 'http://s3.amazonaws.com/h2o-release/h2o/rel-yau/2/Rjar/h2o.jar': status was 'Failure when receiving data from the peer'
Error in download.file(url = h2o_url, destfile = temp_file, mode = "wb",  : 
  download from 'http://s3.amazonaws.com/h2o-release/h2o/rel-yau/2/Rjar/h2o.jar' failed
Error: unable to load R code in package h2o
Execution halted
ERROR: lazy loading failed for package h2o
 (at easybuild/tools/run.py:529 in parse_cmd_output)
== 2019-12-18 18:26:31,889 easyblock.py:3094 WARNING build failed (first 300 chars): cmd " R CMD INSTALL /rds/bear-sysadmin/configmgmt/easybuild/sources/r/R/extensions/h2o_3.26.0.2.tar.gz   --library=/rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/R/3.6.2-foss-2019b/lib64/R/library --no-clean-on-error " exited with exit code 1 and output:
* installing *source* pack
== 2019-12-18 18:26:31,889 easyblock.py:295 INFO Closing log for application name R version 3.6.2