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edmondac/NAMD-2.14-fosscuda-2019b_partial.log

Created August 14, 2020 14:51
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(partial) EasyBuild log for failed build of /scratch/edmondac-admin/eb-kbd1svqx/files_pr11090/n/NAMD/NAMD-2.14-fosscuda-2019b.eb (PR #11090)
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NAMD-2.14-fosscuda-2019b_partial.log
lang/flex/2.6.4-GCCcore-8.3.0
lang/Java/11.0.2
lang/NASM/2.14.02-GCCcore-8.2.0
lang/NASM/2.14.02-GCCcore-8.3.0
lang/Perl/5.28.1-GCCcore-8.2.0
lang/Perl/5.30.0-GCCcore-8.3.0
lang/Python/2.7.15-GCCcore-8.2.0
lang/Python/2.7.16-GCCcore-8.3.0
lang/Python/3.7.2-GCCcore-8.2.0
lang/Python/3.7.4-GCCcore-8.3.0
lang/R/3.6.2-foss-2019b
lang/R/3.6.2-fosscuda-2019b
lang/SciPy-bundle/2019.10-foss-2019b-Python-3.7.4
lang/SciPy-bundle/2019.10-fosscuda-2019b-Python-3.7.4
lang/Tcl/8.6.9-GCCcore-8.2.0
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lib/libffi/3.2.1-GCCcore-8.3.0
lib/libgpuarray/0.7.6-fosscuda-2019b
lib/libgpuarray/0.7.6-fosscuda-2019b-Python-3.7.4
lib/libjpeg-turbo/2.0.2-GCCcore-8.2.0
lib/libjpeg-turbo/2.0.3-GCCcore-8.3.0
lib/libpng/1.6.36-GCCcore-8.2.0
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lib/libunwind/1.3.1-GCCcore-8.3.0
lib/libxml2/2.9.8-GCCcore-8.2.0
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lib/NCCL/2.4.8-gcccuda-2019b
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math/Theano/1.0.4-fosscuda-2019b-Python-3.7.4
mpi/OpenMPI/3.1.3-GCC-8.2.0-2.31.1
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numlib/OpenBLAS/0.3.5-GCC-8.2.0-2.31.1
numlib/OpenBLAS/0.3.7-GCC-8.3.0
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system/CUDA/10.1.243
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system/hwloc/1.11.11-GCCcore-8.2.0
system/hwloc/1.11.12-GCCcore-8.3.0
system/libpciaccess/0.14-GCCcore-8.2.0
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toolchain/foss/2019a
toolchain/foss/2019b
toolchain/fosscuda/2019b
toolchain/gcccuda/2019b
toolchain/gompi/2019a
toolchain/gompi/2019b
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mpi/mpich-3.0-x86_64
mpi/mpich-x86_64
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bb-singularity-conf/1(default)
bb-variables/1
bb-variables/10
bb-variables/11
bb-variables/12
bb-variables/13
bb-variables/14
bb-variables/15(default)
bb-variables/2
bb-variables/3
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bb-variables/5
bb-variables/6
bb-variables/7
bb-variables/8
bb-variables/9
bear-apps/2017a/1
bear-apps/2017a/2
bear-apps/2018a/1
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bear-apps/2018b/4
bear-apps/2018b/5
bear-apps/2019a/1
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bear-apps/2019b/1
bear-apps/2019b/2
bear-apps/2020a/1
bear-apps/2020a/2
bear-apps/archive/1
bear-apps/handbuilt/1
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bear-apps/handbuilt/2016
bear-apps/handbuilt/2017
bear-apps/handbuilt/2018
bear-apps/handbuilt/2019
bear-licences/1
bear-licences/10(default)
bear-licences/2
bear-licences/3
bear-licences/4
bear-licences/5
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bear-licences/7
bear-licences/8
bear-licences/9
bear-sysadmin/1(default)
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bluebear/9
eb-conf/2018a
eb-conf/2018b
eb-conf/2019a
eb-conf/2019b
eb-conf/2020a
eb-conf/github
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eb-rds/2018a
eb-rds/2018a-noib
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eb-rds/2018b-noib
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eb-rds/2019b
eb-rds/2019b-noib
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hadoop/2.2.0
hadoop/2.5.1
hadoop/2.8.0
handbuilt/1
handbuilt/2
handbuilt/2016
handbuilt/2017
handbuilt/2018
handbuilt/2019
ofed/1.5
openmpi-env/1
openmpi-env/2
openmpi-env/3
openmpi-env/4
openmpi-env/5(default)
slurm-helpers/1
slurm-helpers/2
slurm-helpers/3(default)
slurm-interactive/1
slurm-interactive/2(default)
slurm-moab-wrappers/1
slurm-moab-wrappers/2(default)
== 2020-08-14 15:51:06,818 modules.py:717 DEBUG No checking of module output implemented for Environment Modules v3
== 2020-08-14 15:51:06,818 modules.py:817 DEBUG Correcting paths in $LD_LIBRARY_PATH from [''] to []
== 2020-08-14 15:51:06,819 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '')
== 2020-08-14 15:51:06,819 modules.py:817 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2020-08-14 15:51:06,819 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2020-08-14 15:51:06,997 build_log.py:169 ERROR EasyBuild crashed with an error (at easybuild/base/exceptions.py:124 in __init__): utility.c(2245):ERROR:50: Cannot open file '/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/modules//chem/NAMD/2.14-fosscuda-2019b' for 'reading' (at easybuild/tools/modules.py:828 in run_module)
== 2020-08-14 15:51:06,997 config.py:569 DEBUG software install path as specified by 'installpath' and 'subdir_software': /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software
== 2020-08-14 15:51:06,997 filetools.py:1605 INFO Removing lock /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/.locks/_rds_bear-apps_devel_2020a_edmondac-eb-1_EL7_EL7-haswell_software_NAMD_2.14-fosscuda-2019b.lock...
== 2020-08-14 15:51:06,998 filetools.py:330 INFO Path /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/.locks/_rds_bear-apps_devel_2020a_edmondac-eb-1_EL7_EL7-haswell_software_NAMD_2.14-fosscuda-2019b.lock successfully removed.
== 2020-08-14 15:51:06,998 filetools.py:1609 INFO Lock removed: /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/.locks/_rds_bear-apps_devel_2020a_edmondac-eb-1_EL7_EL7-haswell_software_NAMD_2.14-fosscuda-2019b.lock
== 2020-08-14 15:51:06,999 easyblock.py:3238 WARNING build failed (first 300 chars): utility.c(2245):ERROR:50: Cannot open file '/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/modules//chem/NAMD/2.14-fosscuda-2019b' for 'reading'
== 2020-08-14 15:51:06,999 easyblock.py:295 INFO Closing log for application name NAMD version 2.14
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