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October 30, 2020 19:46
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(partial) EasyBuild log for failed build of /tmp/edmondac-admin/eb-v4e12xf8/files_pr11595/j/JAX/JAX-0.1.77-fosscuda-2019b-Python-3.7.4.eb (PR #11595)
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| == 2020-10-30 19:45:14,357 easyblock.py:280 INFO This is EasyBuild 4.3.1.dev0-rb7031917445a536e591f593d1661168bd8cc495c (framework: 4.3.1.dev0-rb7031917445a536e591f593d1661168bd8cc495c, easyblocks: 4.3.1.dev0-r7ade0a3b958033e830a6db97699427e9e685967d) on host bear-pg0306u19a.bear.cluster. | |
| == 2020-10-30 19:45:14,357 easyblock.py:286 INFO This is easyblock ConfigureMake from module easybuild.easyblocks.generic.configuremake (/rds/bear-apps/devel/2019b/edmondac-eb-1/src/easybuild-easyblocks/easybuild/easyblocks/generic/configuremake.py) | |
| == 2020-10-30 19:45:14,357 easyblock.py:894 INFO Build dir set to /dev/shm/build-edmondac-admin/edmondac-admin-1/JAX/0.1.77/fosscuda-2019b-Python-3.7.4 | |
| == 2020-10-30 19:45:14,357 easyblock.py:954 INFO Software install dir set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/JAX/0.1.77-fosscuda-2019b-Python-3.7.4 | |
| == 2020-10-30 19:45:14,357 easyblock.py:959 INFO Module install dir set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/modules/all | |
| == 2020-10-30 19:45:14,357 easyblock.py:265 INFO Init completed for application name JAX version 0.1.77 | |
| == 2020-10-30 19:45:14,357 easyblock.py:3273 INFO Obtained application instance of for JAX (easyblock: ConfigureMake) | |
| == 2020-10-30 19:45:14,358 easyconfig.py:1600 INFO Generating template values... | |
| == 2020-10-30 19:45:14,358 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2020-10-30 19:45:14,358 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2020-10-30 19:45:14,358 easyconfig.py:1619 INFO Template values: arch='ppc64le', bitbucket_account='jax', github_account='jax', mpi_cmd_prefix='mpirun -n 1', name='JAX', nameletter='J', nameletterlower='j', namelower='jax', pymajver='3', pyminver='7', pyshortver='3.7', pyver='3.7.4', toolchain_name='fosscuda', toolchain_version='2019b', version='0.1.77', version_major='0', version_major_minor='0.1', version_minor='1', versionprefix='', versionsuffix='-Python-3.7.4' | |
| == 2020-10-30 19:45:14,359 one.py:159 INFO Skipping reformatting value for parameter 'toolchain' | |
| == 2020-10-30 19:45:14,360 filetools.py:1513 INFO Creating directory /tmp/edmondac-admin/eb-v4e12xf8/reprod_20201030194514_1497313 (parents: True, set_gid: False, sticky: False) | |
| == 2020-10-30 19:45:14,360 easyblock.py:3476 INFO Dumped easyconfig instance to /tmp/edmondac-admin/eb-v4e12xf8/reprod_20201030194514_1497313/JAX-0.1.77-fosscuda-2019b-Python-3.7.4.eb | |
| == 2020-10-30 19:45:14,370 filetools.py:1513 INFO Creating directory /tmp/edmondac-admin/eb-v4e12xf8/reprod_20201030194514_1497313/easyblocks (parents: True, set_gid: False, sticky: False) | |
| == 2020-10-30 19:45:14,381 filetools.py:2032 INFO /rds/bear-apps/devel/2019b/edmondac-eb-1/src/easybuild-easyblocks/easybuild/easyblocks/generic/configuremake.py copied to /tmp/edmondac-admin/eb-v4e12xf8/reprod_20201030194514_1497313/easyblocks/configuremake.py | |
| == 2020-10-30 19:45:14,382 easyblock.py:3456 INFO Dumped easyblock configuremake.py required for reproduction to /tmp/edmondac-admin/eb-v4e12xf8/reprod_20201030194514_1497313/easyblocks | |
| == 2020-10-30 19:45:14,382 filetools.py:1513 INFO Creating directory /tmp/edmondac-admin/eb-v4e12xf8/reprod_20201030194514_1497313/hooks (parents: True, set_gid: False, sticky: False) | |
| == 2020-10-30 19:45:14,382 filetools.py:2032 INFO /rds/bear-sysadmin/tools/apps-scripts/easybuild_hooks.py copied to /tmp/edmondac-admin/eb-v4e12xf8/reprod_20201030194514_1497313/hooks/easybuild_hooks.py | |
| == 2020-10-30 19:45:14,382 easyblock.py:3488 INFO Dumped hooks file /rds/bear-sysadmin/tools/apps-scripts/easybuild_hooks.py which is (potentially) required for reproduction to /tmp/edmondac-admin/eb-v4e12xf8/reprod_20201030194514_1497313/hooks/easybuild_hooks.py | |
| == 2020-10-30 19:45:14,382 easyblock.py:1691 INFO Number of iterations to perform for central part of installation procedure: 1 | |
| == 2020-10-30 19:45:14,382 build_log.py:265 INFO building and installing JAX/0.1.77-fosscuda-2019b-Python-3.7.4... | |
| == 2020-10-30 19:45:14,383 filetools.py:1615 INFO Lock /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/.locks/_rds_bear-apps_devel_2019b_edmondac-eb-1_EL8_EL8-p9_software_JAX_0.1.77-fosscuda-2019b-Python-3.7.4.lock does not exist | |
| == 2020-10-30 19:45:14,383 filetools.py:1556 INFO Creating lock at /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/.locks/_rds_bear-apps_devel_2019b_edmondac-eb-1_EL8_EL8-p9_software_JAX_0.1.77-fosscuda-2019b-Python-3.7.4.lock... | |
| == 2020-10-30 19:45:14,383 filetools.py:1513 INFO Creating directory /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/.locks/_rds_bear-apps_devel_2019b_edmondac-eb-1_EL8_EL8-p9_software_JAX_0.1.77-fosscuda-2019b-Python-3.7.4.lock (parents: True, set_gid: False, sticky: False) | |
| == 2020-10-30 19:45:14,387 filetools.py:1565 INFO Lock created: /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/.locks/_rds_bear-apps_devel_2019b_edmondac-eb-1_EL8_EL8-p9_software_JAX_0.1.77-fosscuda-2019b-Python-3.7.4.lock | |
| == 2020-10-30 19:45:14,387 build_log.py:265 INFO fetching files... | |
| == 2020-10-30 19:45:14,387 easyblock.py:3033 INFO Starting fetch step | |
| == 2020-10-30 19:45:14,387 easyconfig.py:1600 INFO Generating template values... | |
| == 2020-10-30 19:45:14,387 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2020-10-30 19:45:14,387 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2020-10-30 19:45:14,388 easyconfig.py:1619 INFO Template values: arch='ppc64le', bitbucket_account='jax', builddir='/dev/shm/build-edmondac-admin/edmondac-admin-1/JAX/0.1.77/fosscuda-2019b-Python-3.7.4', github_account='jax', installdir='/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/JAX/0.1.77-fosscuda-2019b-Python-3.7.4', mpi_cmd_prefix='mpirun -n 1', name='JAX', nameletter='J', nameletterlower='j', namelower='jax', pymajver='3', pyminver='7', pyshortver='3.7', pyver='3.7.4', toolchain_name='fosscuda', toolchain_version='2019b', version='0.1.77', version_major='0', version_major_minor='0.1', version_minor='1', versionprefix='', versionsuffix='-Python-3.7.4' | |
| == 2020-10-30 19:45:14,388 hooks.py:167 INFO Found pre_fetch_hook hook | |
| == 2020-10-30 19:45:14,388 hooks.py:199 INFO Running 'pre_fetch_hook' hook function (arguments: [<easybuild.easyblocks.generic.configuremake.ConfigureMake object at 0x7fffa88f4f28>])... | |
| == 2020-10-30 19:45:14,944 easyblock.py:3039 INFO Running method fetch_step part of step fetch | |
| == 2020-10-30 19:45:14,944 easyblock.py:1800 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
| == 2020-10-30 19:45:14,945 tools.py:266 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/venv-dev-2019b-1/bin/eb | |
| == 2020-10-30 19:45:14,945 tools.py:282 INFO Not considering /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/venv-dev-2019b-1 (no easybuild/easyconfigs subdir found) | |
| == 2020-10-30 19:45:14,986 easyblock.py:722 INFO Found file jax-v0.1.77.tar.gz at /rds/bear-sysadmin/configmgmt/easybuild/sources/j/JAX/jax-v0.1.77.tar.gz | |
| == 2020-10-30 19:45:14,986 easyblock.py:427 INFO Added sources: [{'name': 'jax-v0.1.77.tar.gz', 'path': '/rds/bear-sysadmin/configmgmt/easybuild/sources/j/JAX/jax-v0.1.77.tar.gz', 'cmd': None, 'checksum': '18fa3bcebf4b1a526349db5a76a508784ec5d05324c192c40f240ccbf9480e26', 'finalpath': '/dev/shm/build-edmondac-admin/edmondac-admin-1/JAX/0.1.77/fosscuda-2019b-Python-3.7.4'}] | |
| == 2020-10-30 19:45:14,986 easyblock.py:1841 INFO no patches provided | |
| == 2020-10-30 19:45:15,046 easyblock.py:1851 INFO md5 checksum for /rds/bear-sysadmin/configmgmt/easybuild/sources/j/JAX/jax-v0.1.77.tar.gz: 7aa1bd3445fd19c7b17b373f35d0d334 | |
| == 2020-10-30 19:45:15,071 easyblock.py:1851 INFO sha256 checksum for /rds/bear-sysadmin/configmgmt/easybuild/sources/j/JAX/jax-v0.1.77.tar.gz: 18fa3bcebf4b1a526349db5a76a508784ec5d05324c192c40f240ccbf9480e26 | |
| == 2020-10-30 19:45:15,072 easyblock.py:1886 INFO Checking dirs that need to be created: ['/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/JAX/0.1.77-fosscuda-2019b-Python-3.7.4', '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/modules/all/JAX', '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/modules/data/JAX'] | |
| == 2020-10-30 19:45:15,072 filetools.py:1513 INFO Creating directory /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/JAX/0.1.77-fosscuda-2019b-Python-3.7.4 (parents: True, set_gid: False, sticky: False) | |
| == 2020-10-30 19:45:15,078 filetools.py:1513 INFO Creating directory /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/modules/all/JAX (parents: True, set_gid: False, sticky: False) | |
| == 2020-10-30 19:45:15,086 filetools.py:1513 INFO Creating directory /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/modules/data/JAX (parents: True, set_gid: False, sticky: False) | |
| == 2020-10-30 19:45:15,110 configuremake.py:93 INFO config.guess version: 2018-08-29 (last updated: 2020-09-15T08:48:54.275476, SHA256 checksum: c02eb9cc55c86cfd1e9a794e548d25db5c9539e7b2154beb649bc6e2cbffc74c) | |
| == 2020-10-30 19:45:15,110 configuremake.py:148 INFO Found config.guess at /rds/bear-sysadmin/configmgmt/easybuild/sources/generic/eb_v4.3.1.dev0/ConfigureMake/config.guess | |
| == 2020-10-30 19:45:15,110 build_log.py:265 INFO creating build dir, resetting environment... | |
| == 2020-10-30 19:45:15,110 easyblock.py:3033 INFO Starting ready step | |
| == 2020-10-30 19:45:15,110 easyconfig.py:1600 INFO Generating template values... | |
| == 2020-10-30 19:45:15,111 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2020-10-30 19:45:15,111 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2020-10-30 19:45:15,111 easyconfig.py:1619 INFO Template values: arch='ppc64le', bitbucket_account='jax', builddir='/dev/shm/build-edmondac-admin/edmondac-admin-1/JAX/0.1.77/fosscuda-2019b-Python-3.7.4', github_account='jax', installdir='/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/JAX/0.1.77-fosscuda-2019b-Python-3.7.4', mpi_cmd_prefix='mpirun -n 1', name='JAX', nameletter='J', nameletterlower='j', namelower='jax', pymajver='3', pyminver='7', pyshortver='3.7', pyver='3.7.4', toolchain_name='fosscuda', toolchain_version='2019b', version='0.1.77', version_major='0', version_major_minor='0.1', version_minor='1', versionprefix='', versionsuffix='-Python-3.7.4' | |
| == 2020-10-30 19:45:15,111 easyblock.py:3039 INFO Running method check_readiness_step part of step ready | |
| == 2020-10-30 19:45:15,116 easyblock.py:1710 INFO Setting parallelism: 144 | |
| == 2020-10-30 19:45:15,186 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') | |
| == 2020-10-30 19:45:15,186 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2020-10-30 19:45:15,186 easyblock.py:1749 WARNING Loaded modules detected: ['slurm-moab-wrappers/2', 'slurm-helpers/3', 'bb-variables/17', 'openmpi-env/6', 'bear-licences/11', 'bb-singularity-conf/2', 'bear-apps/2017a/2', 'bear-apps/2018a/5', 'bear-apps/2018b/5', 'bear-apps/2019a/2', 'bear-apps/2019b/2', 'bear-apps/handbuilt/2020', 'bluebear/25', 'eb-conf/2019b'] | |
| == 2020-10-30 19:45:15,186 easyblock.py:3039 INFO Running method make_builddir part of step ready | |
| == 2020-10-30 19:45:15,187 filetools.py:1513 INFO Creating directory /dev/shm/build-edmondac-admin/edmondac-admin-1/JAX/0.1.77/fosscuda-2019b-Python-3.7.4 (parents: True, set_gid: False, sticky: False) | |
| == 2020-10-30 19:45:15,187 easyblock.py:3039 INFO Running method reset_env part of step ready | |
| == 2020-10-30 19:45:15,187 easyblock.py:3039 INFO Running method handle_iterate_opts part of step ready | |
| == 2020-10-30 19:45:15,187 easyconfig.py:1600 INFO Generating template values... | |
| == 2020-10-30 19:45:15,188 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2020-10-30 19:45:15,188 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2020-10-30 19:45:15,188 easyconfig.py:1619 INFO Template values: arch='ppc64le', bitbucket_account='jax', builddir='/dev/shm/build-edmondac-admin/edmondac-admin-1/JAX/0.1.77/fosscuda-2019b-Python-3.7.4', github_account='jax', installdir='/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/JAX/0.1.77-fosscuda-2019b-Python-3.7.4', mpi_cmd_prefix='mpirun -n 1', name='JAX', nameletter='J', nameletterlower='j', namelower='jax', parallel='144', pymajver='3', pyminver='7', pyshortver='3.7', pyver='3.7.4', toolchain_name='fosscuda', toolchain_version='2019b', version='0.1.77', version_major='0', version_major_minor='0.1', version_minor='1', versionprefix='', versionsuffix='-Python-3.7.4' | |
| == 2020-10-30 19:45:15,188 build_log.py:265 INFO unpacking... | |
| == 2020-10-30 19:45:15,188 easyblock.py:3033 INFO Starting source step | |
| == 2020-10-30 19:45:15,188 easyconfig.py:1600 INFO Generating template values... | |
| == 2020-10-30 19:45:15,188 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2020-10-30 19:45:15,189 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2020-10-30 19:45:15,189 easyconfig.py:1619 INFO Template values: arch='ppc64le', bitbucket_account='jax', builddir='/dev/shm/build-edmondac-admin/edmondac-admin-1/JAX/0.1.77/fosscuda-2019b-Python-3.7.4', github_account='jax', installdir='/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/JAX/0.1.77-fosscuda-2019b-Python-3.7.4', mpi_cmd_prefix='mpirun -n 1', name='JAX', nameletter='J', nameletterlower='j', namelower='jax', parallel='144', pymajver='3', pyminver='7', pyshortver='3.7', pyver='3.7.4', toolchain_name='fosscuda', toolchain_version='2019b', version='0.1.77', version_major='0', version_major_minor='0.1', version_minor='1', versionprefix='', versionsuffix='-Python-3.7.4' | |
| == 2020-10-30 19:45:15,189 easyblock.py:3039 INFO Running method checksum_step part of step source | |
| == 2020-10-30 19:45:15,215 easyblock.py:1902 INFO Checksum verification for /rds/bear-sysadmin/configmgmt/easybuild/sources/j/JAX/jax-v0.1.77.tar.gz using 18fa3bcebf4b1a526349db5a76a508784ec5d05324c192c40f240ccbf9480e26 passed. | |
| == 2020-10-30 19:45:15,215 easyblock.py:3039 INFO Running method extract_step part of step source | |
| == 2020-10-30 19:45:15,215 easyblock.py:1989 INFO Unpacking source jax-v0.1.77.tar.gz | |
| == 2020-10-30 19:45:15,215 run.py:222 INFO running cmd: tar xzf /rds/bear-sysadmin/configmgmt/easybuild/sources/j/JAX/jax-v0.1.77.tar.gz | |
| == 2020-10-30 19:45:15,355 build_log.py:265 INFO patching... | |
| == 2020-10-30 19:45:15,355 easyblock.py:3033 INFO Starting patch step | |
| == 2020-10-30 19:45:15,355 easyconfig.py:1600 INFO Generating template values... | |
| == 2020-10-30 19:45:15,355 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2020-10-30 19:45:15,356 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2020-10-30 19:45:15,356 easyconfig.py:1619 INFO Template values: arch='ppc64le', bitbucket_account='jax', builddir='/dev/shm/build-edmondac-admin/edmondac-admin-1/JAX/0.1.77/fosscuda-2019b-Python-3.7.4', github_account='jax', installdir='/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/JAX/0.1.77-fosscuda-2019b-Python-3.7.4', mpi_cmd_prefix='mpirun -n 1', name='JAX', nameletter='J', nameletterlower='j', namelower='jax', parallel='144', pymajver='3', pyminver='7', pyshortver='3.7', pyver='3.7.4', toolchain_name='fosscuda', toolchain_version='2019b', version='0.1.77', version_major='0', version_major_minor='0.1', version_minor='1', versionprefix='', versionsuffix='-Python-3.7.4' | |
| == 2020-10-30 19:45:15,356 easyblock.py:3039 INFO Running method patch_step part of step patch | |
| == 2020-10-30 19:45:15,356 build_log.py:265 INFO preparing... | |
| == 2020-10-30 19:45:15,356 easyblock.py:3033 INFO Starting prepare step | |
| == 2020-10-30 19:45:15,356 easyconfig.py:1600 INFO Generating template values... | |
| == 2020-10-30 19:45:15,356 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2020-10-30 19:45:15,357 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2020-10-30 19:45:15,357 easyconfig.py:1619 INFO Template values: arch='ppc64le', bitbucket_account='jax', builddir='/dev/shm/build-edmondac-admin/edmondac-admin-1/JAX/0.1.77/fosscuda-2019b-Python-3.7.4', github_account='jax', installdir='/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/JAX/0.1.77-fosscuda-2019b-Python-3.7.4', mpi_cmd_prefix='mpirun -n 1', name='JAX', nameletter='J', nameletterlower='j', namelower='jax', parallel='144', pymajver='3', pyminver='7', pyshortver='3.7', pyver='3.7.4', toolchain_name='fosscuda', toolchain_version='2019b', version='0.1.77', version_major='0', version_major_minor='0.1', version_minor='1', versionprefix='', versionsuffix='-Python-3.7.4' | |
| == 2020-10-30 19:45:15,357 easyblock.py:3039 INFO Running method prepare_step part of step prepare | |
| == 2020-10-30 19:45:15,549 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') | |
| == 2020-10-30 19:45:15,549 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2020-10-30 19:45:15,551 modules.py:606 INFO Checking whether Bazel/2.0.0-GCCcore-8.3.0 exists... | |
| == 2020-10-30 19:45:15,551 modules.py:611 INFO Module Bazel/2.0.0-GCCcore-8.3.0 exists (found in list of available modules) | |
| == 2020-10-30 19:45:15,551 modules.py:634 INFO Result for existence check of Bazel/2.0.0-GCCcore-8.3.0 module: True | |
| == 2020-10-30 19:45:15,551 modules.py:606 INFO Checking whether Python/3.7.4-GCCcore-8.3.0 exists... | |
| == 2020-10-30 19:45:15,551 modules.py:611 INFO Module Python/3.7.4-GCCcore-8.3.0 exists (found in list of available modules) | |
| == 2020-10-30 19:45:15,551 modules.py:634 INFO Result for existence check of Python/3.7.4-GCCcore-8.3.0 module: True | |
| == 2020-10-30 19:45:15,551 modules.py:606 INFO Checking whether SciPy-bundle/2019.10-fosscuda-2019b-Python-3.7.4 exists... | |
| == 2020-10-30 19:45:15,551 modules.py:611 INFO Module SciPy-bundle/2019.10-fosscuda-2019b-Python-3.7.4 exists (found in list of available modules) | |
| == 2020-10-30 19:45:15,552 modules.py:634 INFO Result for existence check of SciPy-bundle/2019.10-fosscuda-2019b-Python-3.7.4 module: True | |
| == 2020-10-30 19:45:15,552 modules.py:606 INFO Checking whether cuDNN/7.6.4.38-gcccuda-2019b exists... | |
| == 2020-10-30 19:45:15,552 modules.py:611 INFO Module cuDNN/7.6.4.38-gcccuda-2019b exists (found in list of available modules) | |
| == 2020-10-30 19:45:15,552 modules.py:634 INFO Result for existence check of cuDNN/7.6.4.38-gcccuda-2019b module: True | |
| == 2020-10-30 19:45:15,552 modules.py:606 INFO Checking whether fosscuda/2019b exists... | |
| == 2020-10-30 19:45:15,552 modules.py:614 INFO Module fosscuda/2019b not found in list of available modules, checking via 'module show'... | |
| == 2020-10-30 19:45:15,719 modules.py:634 INFO Result for existence check of fosscuda/2019b module: True | |
| == 2020-10-30 19:45:15,788 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') | |
| == 2020-10-30 19:45:15,788 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2020-10-30 19:45:16,147 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/ScaLAPACK/2.0.2-gompic-2019b/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/FFTW/3.3.8-gompic-2019b/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenBLAS/0.3.7-GCC-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenMPI/3.1.6-gcccuda-2019b/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/hwloc/1.11.12-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/libpciaccess/0.14-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/libxml2/2.9.9-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/XZ/5.2.4-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/numactl/2.0.12-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0/nvvm/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0/extras/CUPTI/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/binutils/2.32-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/zlib/1.2.11-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GCCcore/8.3.0/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GCCcore/8.3.0/lib (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/ScaLAPACK/2.0.2-gompic-2019b/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/FFTW/3.3.8-gompic-2019b/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenBLAS/0.3.7-GCC-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenMPI/3.1.6-gcccuda-2019b/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/hwloc/1.11.12-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/libpciaccess/0.14-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/libxml2/2.9.9-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/XZ/5.2.4-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/numactl/2.0.12-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0/nvvm/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0/extras/CUPTI/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/binutils/2.32-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/zlib/1.2.11-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GCCcore/8.3.0/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GCCcore/8.3.0/lib') | |
| == 2020-10-30 19:45:16,147 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2020-10-30 19:45:16,266 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/ScaLAPACK/2.0.2-gompic-2019b/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/FFTW/3.3.8-gompic-2019b/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenBLAS/0.3.7-GCC-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenMPI/3.1.6-gcccuda-2019b/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/hwloc/1.11.12-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/libpciaccess/0.14-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/libxml2/2.9.9-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/XZ/5.2.4-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/numactl/2.0.12-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0/nvvm/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0/extras/CUPTI/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/binutils/2.32-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/zlib/1.2.11-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GCCcore/8.3.0/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GCCcore/8.3.0/lib (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/ScaLAPACK/2.0.2-gompic-2019b/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/FFTW/3.3.8-gompic-2019b/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenBLAS/0.3.7-GCC-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenMPI/3.1.6-gcccuda-2019b/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/hwloc/1.11.12-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/libpciaccess/0.14-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/libxml2/2.9.9-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/XZ/5.2.4-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/numactl/2.0.12-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0/nvvm/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0/extras/CUPTI/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/binutils/2.32-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/zlib/1.2.11-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GCCcore/8.3.0/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GCCcore/8.3.0/lib') | |
| == 2020-10-30 19:45:16,266 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2020-10-30 19:45:16,587 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/Java/11.0.6-ppc64le/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/ScaLAPACK/2.0.2-gompic-2019b/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/FFTW/3.3.8-gompic-2019b/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenBLAS/0.3.7-GCC-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenMPI/3.1.6-gcccuda-2019b/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/hwloc/1.11.12-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/libpciaccess/0.14-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/libxml2/2.9.9-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/XZ/5.2.4-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/numactl/2.0.12-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0/nvvm/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0/extras/CUPTI/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/binutils/2.32-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/zlib/1.2.11-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GCCcore/8.3.0/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GCCcore/8.3.0/lib (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/Java/11.0.6-ppc64le/lib') | |
| == 2020-10-30 19:45:16,587 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2020-10-30 19:45:16,965 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/Python/3.7.4-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/libffi/3.2.1-GCCcore-8.3.0/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/libffi/3.2.1-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GMP/6.1.2-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/SQLite/3.29.0-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/Tcl/8.6.9-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/ncurses/6.1-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/libreadline/8.0-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/bzip2/1.0.8-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/Java/11.0.6-ppc64le/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/ScaLAPACK/2.0.2-gompic-2019b/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/FFTW/3.3.8-gompic-2019b/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenBLAS/0.3.7-GCC-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenMPI/3.1.6-gcccuda-2019b/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/hwloc/1.11.12-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/libpciaccess/0.14-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/libxml2/2.9.9-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/XZ/5.2.4-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/numactl/2.0.12-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0/nvvm/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0/extras/CUPTI/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/binutils/2.32-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/zlib/1.2.11-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GCCcore/8.3.0/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GCCcore/8.3.0/lib (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/Python/3.7.4-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/libffi/3.2.1-GCCcore-8.3.0/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/libffi/3.2.1-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GMP/6.1.2-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/SQLite/3.29.0-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/Tcl/8.6.9-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/ncurses/6.1-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/libreadline/8.0-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/bzip2/1.0.8-GCCcore-8.3.0/lib') | |
| == 2020-10-30 19:45:16,965 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2020-10-30 19:45:17,270 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/SciPy-bundle/2019.10-fosscuda-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/SciPy-bundle/2019.10-fosscuda-2019b-Python-3.7.4/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/Python/3.7.4-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/libffi/3.2.1-GCCcore-8.3.0/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/libffi/3.2.1-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GMP/6.1.2-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/SQLite/3.29.0-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/Tcl/8.6.9-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/ncurses/6.1-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/libreadline/8.0-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/bzip2/1.0.8-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/Java/11.0.6-ppc64le/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/ScaLAPACK/2.0.2-gompic-2019b/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/FFTW/3.3.8-gompic-2019b/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenBLAS/0.3.7-GCC-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenMPI/3.1.6-gcccuda-2019b/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/hwloc/1.11.12-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/libpciaccess/0.14-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/libxml2/2.9.9-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/XZ/5.2.4-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/numactl/2.0.12-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0/nvvm/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0/extras/CUPTI/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/binutils/2.32-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/zlib/1.2.11-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GCCcore/8.3.0/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GCCcore/8.3.0/lib (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/SciPy-bundle/2019.10-fosscuda-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/SciPy-bundle/2019.10-fosscuda-2019b-Python-3.7.4/lib') | |
| == 2020-10-30 19:45:17,270 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2020-10-30 19:45:17,547 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/cuDNN/7.6.4.38-gcccuda-2019b/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/SciPy-bundle/2019.10-fosscuda-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/SciPy-bundle/2019.10-fosscuda-2019b-Python-3.7.4/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/Python/3.7.4-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/libffi/3.2.1-GCCcore-8.3.0/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/libffi/3.2.1-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GMP/6.1.2-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/SQLite/3.29.0-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/Tcl/8.6.9-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/ncurses/6.1-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/libreadline/8.0-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/bzip2/1.0.8-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/Java/11.0.6-ppc64le/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/ScaLAPACK/2.0.2-gompic-2019b/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/FFTW/3.3.8-gompic-2019b/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenBLAS/0.3.7-GCC-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenMPI/3.1.6-gcccuda-2019b/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/hwloc/1.11.12-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/libpciaccess/0.14-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/libxml2/2.9.9-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/XZ/5.2.4-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/numactl/2.0.12-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0/nvvm/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0/extras/CUPTI/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/binutils/2.32-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/zlib/1.2.11-GCCcore-8.3.0/lib:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GCCcore/8.3.0/lib64:/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GCCcore/8.3.0/lib (previous value: '/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/cuDNN/7.6.4.38-gcccuda-2019b/lib') | |
| == 2020-10-30 19:45:17,548 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2020-10-30 19:45:17,548 modules.py:606 INFO Checking whether fosscuda/2019b exists... | |
| == 2020-10-30 19:45:17,548 modules.py:614 INFO Module fosscuda/2019b not found in list of available modules, checking via 'module show'... | |
| == 2020-10-30 19:45:17,548 modules.py:634 INFO Result for existence check of fosscuda/2019b module: True | |
| == 2020-10-30 19:45:17,549 toolchain.py:756 INFO List of toolchain dependency modules and toolchain definition match! | |
| == 2020-10-30 19:45:17,549 variables.py:201 WARNING flags_for_subdirs: directory /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0/lib was not found | |
| == 2020-10-30 19:45:17,551 compiler.py:203 WARNING _set_compiler_vars: CUDA_ compiler variable F77 undefined | |
| == 2020-10-30 19:45:17,551 compiler.py:203 WARNING _set_compiler_vars: CUDA_ compiler variable F90 undefined | |
| == 2020-10-30 19:45:17,551 compiler.py:203 WARNING _set_compiler_vars: CUDA_ compiler variable FC undefined | |
| == 2020-10-30 19:45:17,552 compiler.py:347 INFO _set_optimal_architecture: using mcpu=native as optarch for POWER. | |
| == 2020-10-30 19:45:17,568 variables.py:201 WARNING flags_for_subdirs: directory /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/Bazel/2.0.0-GCCcore-8.3.0/include was not found | |
| == 2020-10-30 19:45:17,568 variables.py:201 WARNING flags_for_subdirs: directory /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/Bazel/2.0.0-GCCcore-8.3.0/lib64 was not found | |
| == 2020-10-30 19:45:17,568 variables.py:201 WARNING flags_for_subdirs: directory /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/Bazel/2.0.0-GCCcore-8.3.0/lib was not found | |
| == 2020-10-30 19:45:17,569 variables.py:201 WARNING flags_for_subdirs: directory /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/SciPy-bundle/2019.10-fosscuda-2019b-Python-3.7.4/include was not found | |
| == 2020-10-30 19:45:17,594 environment.py:97 INFO Environment variable BLAS_INC_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenBLAS/0.3.7-GCC-8.3.0/include (previously undefined) | |
| == 2020-10-30 19:45:17,594 environment.py:97 INFO Environment variable EBVARBLAS_INC_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenBLAS/0.3.7-GCC-8.3.0/include (previously undefined) | |
| == 2020-10-30 19:45:17,594 environment.py:97 INFO Environment variable BLAS_LAPACK_INC_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenBLAS/0.3.7-GCC-8.3.0/include (previously undefined) | |
| == 2020-10-30 19:45:17,595 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenBLAS/0.3.7-GCC-8.3.0/include (previously undefined) | |
| == 2020-10-30 19:45:17,595 environment.py:97 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenBLAS/0.3.7-GCC-8.3.0/lib (previously undefined) | |
| == 2020-10-30 19:45:17,595 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenBLAS/0.3.7-GCC-8.3.0/lib (previously undefined) | |
| == 2020-10-30 19:45:17,595 environment.py:97 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2020-10-30 19:45:17,595 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2020-10-30 19:45:17,595 environment.py:97 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2020-10-30 19:45:17,595 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2020-10-30 19:45:17,595 environment.py:97 INFO Environment variable BLAS_LIB_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenBLAS/0.3.7-GCC-8.3.0/lib (previously undefined) | |
| == 2020-10-30 19:45:17,595 environment.py:97 INFO Environment variable EBVARBLAS_LIB_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenBLAS/0.3.7-GCC-8.3.0/lib (previously undefined) | |
| == 2020-10-30 19:45:17,596 environment.py:97 INFO Environment variable BLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2020-10-30 19:45:17,596 environment.py:97 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2020-10-30 19:45:17,596 environment.py:97 INFO Environment variable BLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2020-10-30 19:45:17,596 environment.py:97 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2020-10-30 19:45:17,596 environment.py:97 INFO Environment variable CC set to gcc (previously undefined) | |
| == 2020-10-30 19:45:17,596 environment.py:97 INFO Environment variable EBVARCC set to gcc (previously undefined) | |
| == 2020-10-30 19:45:17,596 environment.py:97 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -mcpu=native -fno-math-errno (previously undefined) | |
| == 2020-10-30 19:45:17,596 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -mcpu=native -fno-math-errno (previously undefined) | |
| == 2020-10-30 19:45:17,596 environment.py:97 INFO Environment variable CPPFLAGS set to -I/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/cuDNN/7.6.4.38-gcccuda-2019b/include -I/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/Python/3.7.4-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/FFTW/3.3.8-gompic-2019b/include -I/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/ScaLAPACK/2.0.2-gompic-2019b/include -I/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenBLAS/0.3.7-GCC-8.3.0/include (previously undefined) | |
| == 2020-10-30 19:45:17,597 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/cuDNN/7.6.4.38-gcccuda-2019b/include -I/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/Python/3.7.4-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/FFTW/3.3.8-gompic-2019b/include -I/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/ScaLAPACK/2.0.2-gompic-2019b/include -I/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenBLAS/0.3.7-GCC-8.3.0/include (previously undefined) | |
| == 2020-10-30 19:45:17,597 environment.py:97 INFO Environment variable CUDA_CC set to nvcc -ccbin="g++" (previously undefined) | |
| == 2020-10-30 19:45:17,597 environment.py:97 INFO Environment variable EBVARCUDA_CC set to nvcc -ccbin="g++" (previously undefined) | |
| == 2020-10-30 19:45:17,597 environment.py:97 INFO Environment variable CUDA_CFLAGS set to -Xcompiler="-O2 -ftree-vectorize -mcpu=native -fno-math-errno" -Xlinker="-L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GCCcore/8.3.0/lib64 -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GCCcore/8.3.0/lib -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0/lib64 -lm -lrt -lcudart -lpthread" (previously undefined) | |
| == 2020-10-30 19:45:17,597 environment.py:97 INFO Environment variable EBVARCUDA_CFLAGS set to -Xcompiler="-O2 -ftree-vectorize -mcpu=native -fno-math-errno" -Xlinker="-L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GCCcore/8.3.0/lib64 -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GCCcore/8.3.0/lib -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0/lib64 -lm -lrt -lcudart -lpthread" (previously undefined) | |
| == 2020-10-30 19:45:17,597 environment.py:97 INFO Environment variable CUDA_CXX set to nvcc -ccbin="g++" (previously undefined) | |
| == 2020-10-30 19:45:17,597 environment.py:97 INFO Environment variable EBVARCUDA_CXX set to nvcc -ccbin="g++" (previously undefined) | |
| == 2020-10-30 19:45:17,597 environment.py:97 INFO Environment variable CUDA_CXXFLAGS set to -Xcompiler="-O2 -ftree-vectorize -mcpu=native -fno-math-errno" -Xlinker="-L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GCCcore/8.3.0/lib64 -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GCCcore/8.3.0/lib -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0/lib64 -lm -lrt -lcudart -lpthread" (previously undefined) | |
| == 2020-10-30 19:45:17,597 environment.py:97 INFO Environment variable EBVARCUDA_CXXFLAGS set to -Xcompiler="-O2 -ftree-vectorize -mcpu=native -fno-math-errno" -Xlinker="-L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GCCcore/8.3.0/lib64 -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GCCcore/8.3.0/lib -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0/lib64 -lm -lrt -lcudart -lpthread" (previously undefined) | |
| == 2020-10-30 19:45:17,598 environment.py:97 INFO Environment variable CUDA_F77 set to (previously undefined) | |
| == 2020-10-30 19:45:17,598 environment.py:97 INFO Environment variable EBVARCUDA_F77 set to (previously undefined) | |
| == 2020-10-30 19:45:17,598 environment.py:97 INFO Environment variable CUDA_F90 set to (previously undefined) | |
| == 2020-10-30 19:45:17,598 environment.py:97 INFO Environment variable EBVARCUDA_F90 set to (previously undefined) | |
| == 2020-10-30 19:45:17,598 environment.py:97 INFO Environment variable CUDA_FC set to (previously undefined) | |
| == 2020-10-30 19:45:17,598 environment.py:97 INFO Environment variable EBVARCUDA_FC set to (previously undefined) | |
| == 2020-10-30 19:45:17,598 environment.py:97 INFO Environment variable CXX set to g++ (previously undefined) | |
| == 2020-10-30 19:45:17,598 environment.py:97 INFO Environment variable EBVARCXX set to g++ (previously undefined) | |
| == 2020-10-30 19:45:17,598 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -mcpu=native -fno-math-errno (previously undefined) | |
| == 2020-10-30 19:45:17,598 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -mcpu=native -fno-math-errno (previously undefined) | |
| == 2020-10-30 19:45:17,599 environment.py:97 INFO Environment variable F77 set to gfortran (previously undefined) | |
| == 2020-10-30 19:45:17,599 environment.py:97 INFO Environment variable EBVARF77 set to gfortran (previously undefined) | |
| == 2020-10-30 19:45:17,599 environment.py:97 INFO Environment variable F90 set to gfortran (previously undefined) | |
| == 2020-10-30 19:45:17,599 environment.py:97 INFO Environment variable EBVARF90 set to gfortran (previously undefined) | |
| == 2020-10-30 19:45:17,599 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -mcpu=native -fno-math-errno (previously undefined) | |
| == 2020-10-30 19:45:17,599 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -mcpu=native -fno-math-errno (previously undefined) | |
| == 2020-10-30 19:45:17,599 environment.py:97 INFO Environment variable FC set to gfortran (previously undefined) | |
| == 2020-10-30 19:45:17,599 environment.py:97 INFO Environment variable EBVARFC set to gfortran (previously undefined) | |
| == 2020-10-30 19:45:17,599 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -mcpu=native -fno-math-errno (previously undefined) | |
| == 2020-10-30 19:45:17,600 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -mcpu=native -fno-math-errno (previously undefined) | |
| == 2020-10-30 19:45:17,600 environment.py:97 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -mcpu=native -fno-math-errno (previously undefined) | |
| == 2020-10-30 19:45:17,600 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -mcpu=native -fno-math-errno (previously undefined) | |
| == 2020-10-30 19:45:17,600 environment.py:97 INFO Environment variable FFTW_INC_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/FFTW/3.3.8-gompic-2019b/include (previously undefined) | |
| == 2020-10-30 19:45:17,600 environment.py:97 INFO Environment variable EBVARFFTW_INC_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/FFTW/3.3.8-gompic-2019b/include (previously undefined) | |
| == 2020-10-30 19:45:17,600 environment.py:97 INFO Environment variable FFTW_LIB_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/FFTW/3.3.8-gompic-2019b/lib (previously undefined) | |
| == 2020-10-30 19:45:17,600 environment.py:97 INFO Environment variable EBVARFFTW_LIB_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/FFTW/3.3.8-gompic-2019b/lib (previously undefined) | |
| == 2020-10-30 19:45:17,600 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2020-10-30 19:45:17,600 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2020-10-30 19:45:17,601 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
| == 2020-10-30 19:45:17,601 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
| == 2020-10-30 19:45:17,601 environment.py:97 INFO Environment variable FFT_INC_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/FFTW/3.3.8-gompic-2019b/include (previously undefined) | |
| == 2020-10-30 19:45:17,601 environment.py:97 INFO Environment variable EBVARFFT_INC_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/FFTW/3.3.8-gompic-2019b/include (previously undefined) | |
| == 2020-10-30 19:45:17,601 environment.py:97 INFO Environment variable FFT_LIB_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/FFTW/3.3.8-gompic-2019b/lib (previously undefined) | |
| == 2020-10-30 19:45:17,601 environment.py:97 INFO Environment variable EBVARFFT_LIB_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/FFTW/3.3.8-gompic-2019b/lib (previously undefined) | |
| == 2020-10-30 19:45:17,601 environment.py:97 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2020-10-30 19:45:17,601 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2020-10-30 19:45:17,601 environment.py:97 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
| == 2020-10-30 19:45:17,601 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
| == 2020-10-30 19:45:17,602 environment.py:97 INFO Environment variable FLIBS set to -lgfortran (previously undefined) | |
| == 2020-10-30 19:45:17,602 environment.py:97 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) | |
| == 2020-10-30 19:45:17,602 environment.py:97 INFO Environment variable LAPACK_INC_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenBLAS/0.3.7-GCC-8.3.0/include (previously undefined) | |
| == 2020-10-30 19:45:17,602 environment.py:97 INFO Environment variable EBVARLAPACK_INC_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenBLAS/0.3.7-GCC-8.3.0/include (previously undefined) | |
| == 2020-10-30 19:45:17,602 environment.py:97 INFO Environment variable LAPACK_LIB_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenBLAS/0.3.7-GCC-8.3.0/lib (previously undefined) | |
| == 2020-10-30 19:45:17,602 environment.py:97 INFO Environment variable EBVARLAPACK_LIB_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenBLAS/0.3.7-GCC-8.3.0/lib (previously undefined) | |
| == 2020-10-30 19:45:17,602 environment.py:97 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2020-10-30 19:45:17,602 environment.py:97 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2020-10-30 19:45:17,602 environment.py:97 INFO Environment variable LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2020-10-30 19:45:17,603 environment.py:97 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2020-10-30 19:45:17,603 environment.py:97 INFO Environment variable LDFLAGS set to -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/cuDNN/7.6.4.38-gcccuda-2019b/lib64 -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/cuDNN/7.6.4.38-gcccuda-2019b/lib -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/SciPy-bundle/2019.10-fosscuda-2019b-Python-3.7.4/lib64 -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/SciPy-bundle/2019.10-fosscuda-2019b-Python-3.7.4/lib -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/Python/3.7.4-GCCcore-8.3.0/lib64 -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/Python/3.7.4-GCCcore-8.3.0/lib -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/FFTW/3.3.8-gompic-2019b/lib64 -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/FFTW/3.3.8-gompic-2019b/lib -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/ScaLAPACK/2.0.2-gompic-2019b/lib64 -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/ScaLAPACK/2.0.2-gompic-2019b/lib -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenBLAS/0.3.7-GCC-8.3.0/lib64 -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenBLAS/0.3.7-GCC-8.3.0/lib -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GCCcore/8.3.0/lib64 -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GCCcore/8.3.0/lib -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0/lib64 (previously undefined) | |
| == 2020-10-30 19:45:17,603 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/cuDNN/7.6.4.38-gcccuda-2019b/lib64 -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/cuDNN/7.6.4.38-gcccuda-2019b/lib -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/SciPy-bundle/2019.10-fosscuda-2019b-Python-3.7.4/lib64 -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/SciPy-bundle/2019.10-fosscuda-2019b-Python-3.7.4/lib -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/Python/3.7.4-GCCcore-8.3.0/lib64 -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/Python/3.7.4-GCCcore-8.3.0/lib -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/FFTW/3.3.8-gompic-2019b/lib64 -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/FFTW/3.3.8-gompic-2019b/lib -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/ScaLAPACK/2.0.2-gompic-2019b/lib64 -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/ScaLAPACK/2.0.2-gompic-2019b/lib -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenBLAS/0.3.7-GCC-8.3.0/lib64 -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenBLAS/0.3.7-GCC-8.3.0/lib -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GCCcore/8.3.0/lib64 -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/GCCcore/8.3.0/lib -L/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0/lib64 (previously undefined) | |
| == 2020-10-30 19:45:17,603 environment.py:97 INFO Environment variable LIBBLAS set to -lopenblas -lgfortran (previously undefined) | |
| == 2020-10-30 19:45:17,603 environment.py:97 INFO Environment variable EBVARLIBBLAS set to -lopenblas -lgfortran (previously undefined) | |
| == 2020-10-30 19:45:17,603 environment.py:97 INFO Environment variable LIBBLAS_MT set to -lopenblas -lgfortran (previously undefined) | |
| == 2020-10-30 19:45:17,603 environment.py:97 INFO Environment variable EBVARLIBBLAS_MT set to -lopenblas -lgfortran (previously undefined) | |
| == 2020-10-30 19:45:17,603 environment.py:97 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined) | |
| == 2020-10-30 19:45:17,603 environment.py:97 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined) | |
| == 2020-10-30 19:45:17,604 environment.py:97 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined) | |
| == 2020-10-30 19:45:17,604 environment.py:97 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined) | |
| == 2020-10-30 19:45:17,604 environment.py:97 INFO Environment variable LIBLAPACK set to -lopenblas -lgfortran (previously undefined) | |
| == 2020-10-30 19:45:17,604 environment.py:97 INFO Environment variable EBVARLIBLAPACK set to -lopenblas -lgfortran (previously undefined) | |
| == 2020-10-30 19:45:17,604 environment.py:97 INFO Environment variable LIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined) | |
| == 2020-10-30 19:45:17,604 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined) | |
| == 2020-10-30 19:45:17,604 environment.py:97 INFO Environment variable LIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined) | |
| == 2020-10-30 19:45:17,604 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined) | |
| == 2020-10-30 19:45:17,604 environment.py:97 INFO Environment variable LIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined) | |
| == 2020-10-30 19:45:17,605 environment.py:97 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined) | |
| == 2020-10-30 19:45:17,605 environment.py:97 INFO Environment variable LIBS set to -lm -lrt -lcudart -lpthread (previously undefined) | |
| == 2020-10-30 19:45:17,605 environment.py:97 INFO Environment variable EBVARLIBS set to -lm -lrt -lcudart -lpthread (previously undefined) | |
| == 2020-10-30 19:45:17,605 environment.py:97 INFO Environment variable LIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined) | |
| == 2020-10-30 19:45:17,605 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined) | |
| == 2020-10-30 19:45:17,605 environment.py:97 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined) | |
| == 2020-10-30 19:45:17,605 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined) | |
| == 2020-10-30 19:45:17,605 environment.py:97 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2020-10-30 19:45:17,605 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2020-10-30 19:45:17,605 environment.py:97 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2020-10-30 19:45:17,606 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2020-10-30 19:45:17,606 environment.py:97 INFO Environment variable MPICC set to mpicc (previously undefined) | |
| == 2020-10-30 19:45:17,606 environment.py:97 INFO Environment variable EBVARMPICC set to mpicc (previously undefined) | |
| == 2020-10-30 19:45:17,606 environment.py:97 INFO Environment variable MPICXX set to mpicxx (previously undefined) | |
| == 2020-10-30 19:45:17,606 environment.py:97 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined) | |
| == 2020-10-30 19:45:17,606 environment.py:97 INFO Environment variable MPIF77 set to mpifort (previously undefined) | |
| == 2020-10-30 19:45:17,606 environment.py:97 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined) | |
| == 2020-10-30 19:45:17,606 environment.py:97 INFO Environment variable MPIF90 set to mpifort (previously undefined) | |
| == 2020-10-30 19:45:17,606 environment.py:97 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined) | |
| == 2020-10-30 19:45:17,607 environment.py:97 INFO Environment variable MPIFC set to mpifort (previously undefined) | |
| == 2020-10-30 19:45:17,607 environment.py:97 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined) | |
| == 2020-10-30 19:45:17,607 environment.py:97 INFO Environment variable MPI_INC_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenMPI/3.1.6-gcccuda-2019b/include (previously undefined) | |
| == 2020-10-30 19:45:17,607 environment.py:97 INFO Environment variable EBVARMPI_INC_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenMPI/3.1.6-gcccuda-2019b/include (previously undefined) | |
| == 2020-10-30 19:45:17,607 environment.py:97 INFO Environment variable MPI_LIB_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenMPI/3.1.6-gcccuda-2019b/lib64 (previously undefined) | |
| == 2020-10-30 19:45:17,607 environment.py:97 INFO Environment variable EBVARMPI_LIB_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenMPI/3.1.6-gcccuda-2019b/lib64 (previously undefined) | |
| == 2020-10-30 19:45:17,607 environment.py:97 INFO Environment variable MPI_LIB_SHARED set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenMPI/3.1.6-gcccuda-2019b/lib64/libmpi.so (previously undefined) | |
| == 2020-10-30 19:45:17,607 environment.py:97 INFO Environment variable EBVARMPI_LIB_SHARED set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/OpenMPI/3.1.6-gcccuda-2019b/lib64/libmpi.so (previously undefined) | |
| == 2020-10-30 19:45:17,607 environment.py:97 INFO Environment variable MPI_LIB_STATIC set to (previously undefined) | |
| == 2020-10-30 19:45:17,608 environment.py:97 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined) | |
| == 2020-10-30 19:45:17,608 environment.py:97 INFO Environment variable OMPI_CC set to gcc (previously undefined) | |
| == 2020-10-30 19:45:17,608 environment.py:97 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined) | |
| == 2020-10-30 19:45:17,608 environment.py:97 INFO Environment variable OMPI_CXX set to g++ (previously undefined) | |
| == 2020-10-30 19:45:17,608 environment.py:97 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined) | |
| == 2020-10-30 19:45:17,608 environment.py:97 INFO Environment variable OMPI_F77 set to gfortran (previously undefined) | |
| == 2020-10-30 19:45:17,608 environment.py:97 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined) | |
| == 2020-10-30 19:45:17,608 environment.py:97 INFO Environment variable OMPI_F90 set to gfortran (previously undefined) | |
| == 2020-10-30 19:45:17,608 environment.py:97 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined) | |
| == 2020-10-30 19:45:17,608 environment.py:97 INFO Environment variable OMPI_FC set to gfortran (previously undefined) | |
| == 2020-10-30 19:45:17,609 environment.py:97 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined) | |
| == 2020-10-30 19:45:17,609 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -mcpu=native (previously undefined) | |
| == 2020-10-30 19:45:17,609 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -mcpu=native (previously undefined) | |
| == 2020-10-30 19:45:17,609 environment.py:97 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) | |
| == 2020-10-30 19:45:17,609 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) | |
| == 2020-10-30 19:45:17,609 environment.py:97 INFO Environment variable SCALAPACK_INC_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/ScaLAPACK/2.0.2-gompic-2019b/include (previously undefined) | |
| == 2020-10-30 19:45:17,609 environment.py:97 INFO Environment variable EBVARSCALAPACK_INC_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/ScaLAPACK/2.0.2-gompic-2019b/include (previously undefined) | |
| == 2020-10-30 19:45:17,609 environment.py:97 INFO Environment variable SCALAPACK_LIB_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/ScaLAPACK/2.0.2-gompic-2019b/lib (previously undefined) | |
| == 2020-10-30 19:45:17,609 environment.py:97 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/ScaLAPACK/2.0.2-gompic-2019b/lib (previously undefined) | |
| == 2020-10-30 19:45:17,610 environment.py:97 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2020-10-30 19:45:17,610 environment.py:97 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2020-10-30 19:45:17,610 environment.py:97 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined) | |
| == 2020-10-30 19:45:17,610 environment.py:97 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined) | |
| == 2020-10-30 19:45:17,610 easyblock.py:1610 INFO Using /dev/shm/build-edmondac-admin/edmondac-admin-1/JAX/0.1.77/fosscuda-2019b-Python-3.7.4/jax-jax-v0.1.77/ as start dir | |
| == 2020-10-30 19:45:17,610 easyblock.py:3008 INFO Skipping configure step (skip: None, skipsteps: ['configure', 'build']) | |
| == 2020-10-30 19:45:17,610 build_log.py:265 INFO configuring [skipped] | |
| == 2020-10-30 19:45:17,611 easyblock.py:3008 INFO Skipping build step (skip: None, skipsteps: ['configure', 'build']) | |
| == 2020-10-30 19:45:17,611 build_log.py:265 INFO building [skipped] | |
| == 2020-10-30 19:45:17,611 build_log.py:265 INFO testing... | |
| == 2020-10-30 19:45:17,611 easyblock.py:3033 INFO Starting test step | |
| == 2020-10-30 19:45:17,611 easyconfig.py:1600 INFO Generating template values... | |
| == 2020-10-30 19:45:17,611 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2020-10-30 19:45:17,611 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2020-10-30 19:45:17,611 easyconfig.py:1619 INFO Template values: arch='ppc64le', bitbucket_account='jax', builddir='/dev/shm/build-edmondac-admin/edmondac-admin-1/JAX/0.1.77/fosscuda-2019b-Python-3.7.4', github_account='jax', installdir='/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/JAX/0.1.77-fosscuda-2019b-Python-3.7.4', mpi_cmd_prefix='mpirun -n 1', name='JAX', nameletter='J', nameletterlower='j', namelower='jax', parallel='144', pymajver='3', pyminver='7', pyshortver='3.7', pyver='3.7.4', toolchain_name='fosscuda', toolchain_version='2019b', version='0.1.77', version_major='0', version_major_minor='0.1', version_minor='1', versionprefix='', versionsuffix='-Python-3.7.4' | |
| == 2020-10-30 19:45:17,612 easyblock.py:3039 INFO Running method test_step part of step test | |
| == 2020-10-30 19:45:17,612 build_log.py:265 INFO installing... | |
| == 2020-10-30 19:45:17,612 easyblock.py:3033 INFO Starting install step | |
| == 2020-10-30 19:45:17,612 easyconfig.py:1600 INFO Generating template values... | |
| == 2020-10-30 19:45:17,612 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2020-10-30 19:45:17,612 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2020-10-30 19:45:17,612 easyconfig.py:1619 INFO Template values: arch='ppc64le', bitbucket_account='jax', builddir='/dev/shm/build-edmondac-admin/edmondac-admin-1/JAX/0.1.77/fosscuda-2019b-Python-3.7.4', github_account='jax', installdir='/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/JAX/0.1.77-fosscuda-2019b-Python-3.7.4', mpi_cmd_prefix='mpirun -n 1', name='JAX', nameletter='J', nameletterlower='j', namelower='jax', parallel='144', pymajver='3', pyminver='7', pyshortver='3.7', pyver='3.7.4', toolchain_name='fosscuda', toolchain_version='2019b', version='0.1.77', version_major='0', version_major_minor='0.1', version_minor='1', versionprefix='', versionsuffix='-Python-3.7.4' | |
| == 2020-10-30 19:45:17,613 hooks.py:167 INFO Found pre_install_hook hook | |
| == 2020-10-30 19:45:17,613 hooks.py:199 INFO Running 'pre_install_hook' hook function (arguments: [<easybuild.easyblocks.generic.configuremake.ConfigureMake object at 0x7fffa88f4f28>])... | |
| == 2020-10-30 19:45:17,887 easyblock.py:3039 INFO Running method stage_install_step part of step install | |
| == 2020-10-30 19:45:17,887 easyblock.py:3039 INFO Running method make_installdir part of step install | |
| == 2020-10-30 19:45:17,887 easyblock.py:979 INFO Found old directory /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/JAX/0.1.77-fosscuda-2019b-Python-3.7.4 | |
| == 2020-10-30 19:45:17,889 filetools.py:330 INFO Path /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/JAX/0.1.77-fosscuda-2019b-Python-3.7.4 successfully removed. | |
| == 2020-10-30 19:45:17,889 easyblock.py:987 INFO Removed old directory /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/JAX/0.1.77-fosscuda-2019b-Python-3.7.4 | |
| == 2020-10-30 19:45:17,890 filetools.py:1513 INFO Creating directory /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/JAX/0.1.77-fosscuda-2019b-Python-3.7.4 (parents: True, set_gid: False, sticky: False) | |
| == 2020-10-30 19:45:17,897 easyblock.py:3039 INFO Running method install_step part of step install | |
| == 2020-10-30 19:45:17,898 run.py:222 INFO running cmd: export TF_CUDA_PATHS=${EBROOTCUDA} && export HOME=/dev/shm/build-edmondac-admin/edmondac-admin-1/JAX/0.1.77/fosscuda-2019b-Python-3.7.4/.home/ && python build/build.py --enable_cuda --cuda_path ${EBROOTCUDA} --cudnn_path ${EBROOTCUDNN} --bazel_path ${EBROOTBAZEL}/bin/bazel --bazel_options=--action_env=PYTHONPATH --noenable_mkl_dnn && (cd build && pip install --prefix /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/JAX/0.1.77-fosscuda-2019b-Python-3.7.4 .) && pip install --prefix /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/JAX/0.1.77-fosscuda-2019b-Python-3.7.4 . | |
| == 2020-10-30 19:46:43,275 build_log.py:169 ERROR EasyBuild crashed with an error (at easybuild/base/exceptions.py:124 in __init__): cmd " export TF_CUDA_PATHS=${EBROOTCUDA} && export HOME=/dev/shm/build-edmondac-admin/edmondac-admin-1/JAX/0.1.77/fosscuda-2019b-Python-3.7.4/.home/ && python build/build.py --enable_cuda --cuda_path ${EBROOTCUDA} --cudnn_path ${EBROOTCUDNN} --bazel_path ${EBROOTBAZEL}/bin/bazel --bazel_options=--action_env=PYTHONPATH --noenable_mkl_dnn && (cd build && pip install --prefix /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/JAX/0.1.77-fosscuda-2019b-Python-3.7.4 .) && pip install --prefix /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/JAX/0.1.77-fosscuda-2019b-Python-3.7.4 . " exited with exit code 1 and output: | |
| Extracting Bazel installation... | |
| Starting local Bazel server and connecting to it... | |
| WARNING: ignoring LD_PRELOAD in environment. | |
| INFO: Options provided by the client: | |
| Inherited 'common' options: --isatty=0 --terminal_columns=158 | |
| INFO: Reading rc options for 'run' from /dev/shm/build-edmondac-admin/edmondac-admin-1/JAX/0.1.77/fosscuda-2019b-Python-3.7.4/jax-jax-v0.1.77/.bazelrc: | |
| Inherited 'common' options: --experimental_repo_remote_exec | |
| INFO: Reading rc options for 'run' from /dev/shm/build-edmondac-admin/edmondac-admin-1/JAX/0.1.77/fosscuda-2019b-Python-3.7.4/jax-jax-v0.1.77/.bazelrc: | |
| Inherited 'build' options: --repo_env PYTHON_BIN_PATH=/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/Python/3.7.4-GCCcore-8.3.0/bin/python --python_path=/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/Python/3.7.4-GCCcore-8.3.0/bin/python --repo_env TF_NEED_CUDA=1 --action_env TF_CUDA_COMPUTE_CAPABILITIES=3.5,5.2,6.0,6.1,7.0 --distinct_host_configuration=false --copt=-Wno-sign-compare -c opt --apple_platform_type=macos --macos_minimum_os=10.9 --announce_rc --define open_source_build=true --define=no_aws_support=true --define=no_gcp_support=true --define=no_hdfs_support=true --define=no_kafka_support=true --define=no_ignite_support=true --define=grpc_no_ares=true --spawn_strategy=standalone --strategy=Genrule=standalone --cxxopt=-std=c++14 --host_cxxopt=-std=c++14 --action_env CUDA_TOOLKIT_PATH=/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0 --action_env CUDNN_INSTALL_PATH=/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/cuDNN/7.6.4.38-gcccuda-2019b | |
| INFO: Found applicable config definition build:short_logs in file /dev/shm/build-edmondac-admin/edmondac-admin-1/JAX/0.1.77/fosscuda-2019b-Python-3.7.4/jax-jax-v0.1.77/.bazelrc: --output_filter=DONT_MATCH_ANYTHING | |
| INFO: Found applicable config definition build:cuda in file /dev/shm/build-edmondac-admin/edmondac-admin-1/JAX/0.1.77/fosscuda-2019b-Python-3.7.4/jax-jax-v0.1.77/.bazelrc: --crosstool_top=@local_config_cuda//crosstool:toolchain --define=using_cuda=true --define=using_cuda_nvcc=true | |
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| Loading: 0 packages loaded | |
| currently loading: build | |
| Loading: 0 packages loaded | |
| currently loading: build | |
| Analyzing: target //build:install_xla_in_source_tree (1 packages loaded, 0 targets configured) | |
| Analyzing: target //build:install_xla_in_source_tree (47 packages loaded, 47 targets configured) | |
| Analyzing: target //build:install_xla_in_source_tree (138 packages loaded, 6174 targets configured) | |
| Analyzing: target //build:install_xla_in_source_tree (139 packages loaded, 6674 targets configured) | |
| Analyzing: target //build:install_xla_in_source_tree (139 packages loaded, 6674 targets configured) | |
| Analyzing: target //build:install_xla_in_source_tree (139 packages loaded, 6674 targets configured) | |
| Analyzing: target //build:install_xla_in_source_tree (139 packages loaded, 6674 targets configured) | |
| WARNING: Download from https://storage.googleapis.com/mirror.tensorflow.org/github.com/llvm/llvm-project/archive/52f0837778b6f3b742b36c22b7c608535a52097b.tar.gz failed: class com.google.devtools.build.lib.bazel.repository.downloader.UnrecoverableHttpException GET returned 404 Not Found | |
| Analyzing: target //build:install_xla_in_source_tree (152 packages loaded, 13072 targets configured) | |
| INFO: Analyzed target //build:install_xla_in_source_tree (152 packages loaded, 13072 targets configured). | |
| INFO: Found 1 target... | |
| [0 / 4] [Prepa] BazelWorkspaceStatusAction stable-status.txt | |
| [1,689 / 4,310] Executing genrule @local_config_cuda//cuda:cuda-lib; 9s local ... (143 actions, 142 running) | |
| ERROR: /dev/shm/build-edmondac-admin/edmondac-admin-1/JAX/0.1.77/fosscuda-2019b-Python-3.7.4/jax-jax-v0.1.77/jaxlib/BUILD:149:1: C++ compilation of rule '//jaxlib:cuda_prng_kernels_lib' failed (Exit 1) | |
| /usr/include/bits/floatn.h(79): error: identifier "__ieee128" is undefined | |
| /usr/include/bits/floatn.h(82): error: invalid argument to attribute "__mode__" | |
| 2 errors detected in the compilation of "/tmp/edmondac-admin/eb-v4e12xf8/tmpxft_002cdeee_00000000-10_cuda_prng_kernels.cu.compute_70.cpp1.ii". | |
| Target //build:install_xla_in_source_tree failed to build | |
| INFO: Elapsed time: 80.895s, Critical Path: 17.07s | |
| INFO: 533 processes: 533 local. | |
| FAILED: Build did NOT complete successfully | |
| ERROR: Build failed. Not running target | |
| FAILED: Build did NOT complete successfully | |
| _ _ __ __ | |
| | | / \ \ \/ / | |
| _ | |/ _ \ \ / | |
| | |_| / ___ \/ \ | |
| \___/_/ \/_/\_\ | |
| Bazel binary path: /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/Bazel/2.0.0-GCCcore-8.3.0/bin/bazel | |
| Python binary path: /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/Python/3.7.4-GCCcore-8.3.0/bin/python | |
| Python version: 3.7 | |
| MKL-DNN enabled: no | |
| -march=native: no | |
| CUDA enabled: yes | |
| CUDA toolkit path: /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/CUDA/10.1.243-GCC-8.3.0 | |
| CUDNN library path: /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/cuDNN/7.6.4.38-gcccuda-2019b | |
| CUDA compute capabilities: 3.5,5.2,6.0,6.1,7.0 | |
| Building XLA and installing it in the jaxlib source tree... | |
| /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/Bazel/2.0.0-GCCcore-8.3.0/bin/bazel run --verbose_failures=true --action_env=PYTHONPATH --config=short_logs --config=cuda --define=xla_python_enable_gpu=true :install_xla_in_source_tree /dev/shm/build-edmondac-admin/edmondac-admin-1/JAX/0.1.77/fosscuda-2019b-Python-3.7.4/jax-jax-v0.1.77/build | |
| Traceback (most recent call last): | |
| File "build/build.py", line 382, in <module> | |
| main() | |
| File "build/build.py", line 377, in main | |
| shell(command) | |
| File "build/build.py", line 47, in shell | |
| output = subprocess.check_output(cmd) | |
| File "/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/subprocess.py", line 395, in check_output | |
| **kwargs).stdout | |
| File "/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/subprocess.py", line 487, in run | |
| output=stdout, stderr=stderr) | |
| subprocess.CalledProcessError: Command '['/rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/Bazel/2.0.0-GCCcore-8.3.0/bin/bazel', 'run', '--verbose_failures=true', '--action_env=PYTHONPATH', '--config=short_logs', '--config=cuda', '--define=xla_python_enable_gpu=true', ':install_xla_in_source_tree', '/dev/shm/build-edmondac-admin/edmondac-admin-1/JAX/0.1.77/fosscuda-2019b-Python-3.7.4/jax-jax-v0.1.77/build']' returned non-zero exit status 1. | |
| (at easybuild/tools/run.py:533 in parse_cmd_output) | |
| == 2020-10-30 19:46:43,275 filetools.py:1623 INFO Removing lock /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/.locks/_rds_bear-apps_devel_2019b_edmondac-eb-1_EL8_EL8-p9_software_JAX_0.1.77-fosscuda-2019b-Python-3.7.4.lock... | |
| == 2020-10-30 19:46:43,276 filetools.py:330 INFO Path /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/.locks/_rds_bear-apps_devel_2019b_edmondac-eb-1_EL8_EL8-p9_software_JAX_0.1.77-fosscuda-2019b-Python-3.7.4.lock successfully removed. | |
| == 2020-10-30 19:46:43,276 filetools.py:1627 INFO Lock removed: /rds/bear-apps/devel/2019b/edmondac-eb-1/EL8/EL8-p9/software/.locks/_rds_bear-apps_devel_2019b_edmondac-eb-1_EL8_EL8-p9_software_JAX_0.1.77-fosscuda-2019b-Python-3.7.4.lock | |
| == 2020-10-30 19:46:43,276 easyblock.py:3311 WARNING build failed (first 300 chars): cmd " export TF_CUDA_PATHS=${EBROOTCUDA} && export HOME=/dev/shm/build-edmondac-admin/edmondac-admin-1/JAX/0.1.77/fosscuda-2019b-Python-3.7.4/.home/ && python build/build.py --enable_cuda --cuda_path ${EBROOTCUDA} --cudnn_path ${EBROOTCUDNN} --bazel_path ${EBROOTBAZEL}/bin/bazel --bazel_options=--ac | |
| == 2020-10-30 19:46:43,276 easyblock.py:295 INFO Closing log for application name JAX version 0.1.77 |
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