Created
August 14, 2020 14:17
-
-
Save edmondac/872929b4f6cdf7c3953454585943544f to your computer and use it in GitHub Desktop.
(partial) EasyBuild log for failed build of /scratch/edmondac-admin/eb-mr3_fr7f/files_pr11090/n/NAMD/NAMD-2.14-foss-2019b-mpi.eb (PR #11090)
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/stl_algo.h:66, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/algorithm:62, | |
from ../../src/xlat-i/xi-AstNode.h:5, | |
from ../../src/xlat-i/xi-Chare.h:6, | |
from ../../src/xlat-i/xi-Chare.C:1: | |
/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/limits:1602:7: internal compiler error: Illegal instruction | |
max() _GLIBCXX_USE_NOEXCEPT { return __FLT_MAX__; } | |
^~~ | |
In file included from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/uniform_int_dist.h:35, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/stl_algo.h:66, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/algorithm:62, | |
from ../../src/xlat-i/xi-AstNode.h:5, | |
from ../../src/xlat-i/xi-Construct.h:4, | |
from ../../src/xlat-i/xi-Module.h:4, | |
from ../../src/xlat-i/xi-Module.C:1: | |
/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/limits:1602:7: internal compiler error: Illegal instruction | |
max() _GLIBCXX_USE_NOEXCEPT { return __FLT_MAX__; } | |
^~~ | |
In file included from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/uniform_int_dist.h:35, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/stl_algo.h:66, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/algorithm:62, | |
from ../../src/xlat-i/xi-AstNode.h:5, | |
from ../../src/xlat-i/xi-Construct.h:4, | |
from ../../src/xlat-i/xi-Template.h:4, | |
from ../../src/xlat-i/xi-Message.h:4, | |
from ../../src/xlat-i/xi-Message.C:1: | |
/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/limits:1602:7: internal compiler error: Illegal instruction | |
max() _GLIBCXX_USE_NOEXCEPT { return __FLT_MAX__; } | |
^~~ | |
In file included from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/uniform_int_dist.h:35, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/stl_algo.h:66, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/algorithm:62, | |
from ../../src/xlat-i/xi-AstNode.h:5, | |
from ../../src/xlat-i/xi-Construct.h:4, | |
from ../../src/xlat-i/xi-Template.h:4, | |
from ../../src/xlat-i/xi-Type.C:2: | |
/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/limits:1602:7: internal compiler error: Illegal instruction | |
max() _GLIBCXX_USE_NOEXCEPT { return __FLT_MAX__; } | |
^~~ | |
0xbb802f crash_signal | |
../../gcc/toplev.c:325 | |
Please submit a full bug report, | |
with preprocessed source if appropriate. | |
Please include the complete backtrace with any bug report. | |
See <https://gcc.gnu.org/bugs/> for instructions. | |
Fatal Error by charmc in directory /dev/shm/build-edmondac-admin/edmondac-admin-1/NAMD/2.14/foss-2019b-mpi/NAMD_2.14_Source/charm-6.10.2/mpi-linux-x86_64-mpicxx/tmp | |
Command g++ -m64 -fPIC -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I../bin/../include -D__CHARMC__=1 -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c ../../src/xlat-i/xi-Construct.C -o xi-Construct.o returned error code 1 | |
charmc exiting... | |
0xbb802f crash_signal | |
../../gcc/toplev.c:325 | |
Please submit a full bug report, | |
with preprocessed source if appropriate. | |
Please include the complete backtrace with any bug report. | |
See <https://gcc.gnu.org/bugs/> for instructions. | |
Fatal Error by charmc in directory /dev/shm/build-edmondac-admin/edmondac-admin-1/NAMD/2.14/foss-2019b-mpi/NAMD_2.14_Source/charm-6.10.2/mpi-linux-x86_64-mpicxx/tmp | |
Command g++ -m64 -fPIC -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I../bin/../include -D__CHARMC__=1 -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c ../../src/xlat-i/xi-Chare.C -o xi-Chare.o returned error code 1 | |
charmc exiting... | |
In file included from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/uniform_int_dist.h:35, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/stl_algo.h:66, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/algorithm:62, | |
from ../../src/xlat-i/xi-AstNode.h:5, | |
from ../../src/xlat-i/xi-symbol.h:9, | |
from ../../src/xlat-i/sdag/CParsedFile.h:7, | |
from ../../src/xlat-i/xi-SdagCollection.h:4, | |
from ../../src/xlat-i/xi-SdagCollection.C:1: | |
/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/limits:1602:7: internal compiler error: Illegal instruction | |
max() _GLIBCXX_USE_NOEXCEPT { return __FLT_MAX__; } | |
^~~ | |
0xbb802f crash_signal | |
../../gcc/toplev.c:325 | |
Please submit a full bug report, | |
with preprocessed source if appropriate. | |
Please include the complete backtrace with any bug report. | |
See <https://gcc.gnu.org/bugs/> for instructions. | |
Fatal Error by charmc in directory /dev/shm/build-edmondac-admin/edmondac-admin-1/NAMD/2.14/foss-2019b-mpi/NAMD_2.14_Source/charm-6.10.2/mpi-linux-x86_64-mpicxx/tmp | |
Command g++ -m64 -fPIC -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I../bin/../include -D__CHARMC__=1 -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c ../../src/xlat-i/xi-Module.C -o xi-Module.o returned error code 1 | |
charmc exiting... | |
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c -o CEntry.o ../../src/xlat-i/sdag/CEntry.C | |
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c -o CParsedFile.o ../../src/xlat-i/sdag/CParsedFile.C | |
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c -o CStateVar.o ../../src/xlat-i/sdag/CStateVar.C | |
0xbb802f crash_signal | |
../../gcc/toplev.c:325 | |
Please submit a full bug report, | |
with preprocessed source if appropriate. | |
Please include the complete backtrace with any bug report. | |
See <https://gcc.gnu.org/bugs/> for instructions. | |
0xbb802f crash_signal | |
../../gcc/toplev.c:325 | |
Please submit a full bug report, | |
with preprocessed source if appropriate. | |
Please include the complete backtrace with any bug report. | |
See <https://gcc.gnu.org/bugs/> for instructions. | |
Fatal Error by charmc in directory /dev/shm/build-edmondac-admin/edmondac-admin-1/NAMD/2.14/foss-2019b-mpi/NAMD_2.14_Source/charm-6.10.2/mpi-linux-x86_64-mpicxx/tmp | |
Fatal Error by charmc in directory /dev/shm/build-edmondac-admin/edmondac-admin-1/NAMD/2.14/foss-2019b-mpi/NAMD_2.14_Source/charm-6.10.2/mpi-linux-x86_64-mpicxx/tmp | |
Command g++ -m64 -fPIC -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I../bin/../include -D__CHARMC__=1 -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c ../../src/xlat-i/xi-Message.C -o xi-Message.o returned error code 1 | |
charmc exiting... | |
Command g++ -m64 -fPIC -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I../bin/../include -D__CHARMC__=1 -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c ../../src/xlat-i/xi-Type.C -o xi-Type.o returned error code 1 | |
charmc exiting... | |
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c -o Serial.o ../../src/xlat-i/sdag/constructs/Serial.C | |
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c -o Case.o ../../src/xlat-i/sdag/constructs/Case.C | |
0xbb802f crash_signal | |
../../gcc/toplev.c:325 | |
Please submit a full bug report, | |
with preprocessed source if appropriate. | |
Please include the complete backtrace with any bug report. | |
See <https://gcc.gnu.org/bugs/> for instructions. | |
Fatal Error by charmc in directory /dev/shm/build-edmondac-admin/edmondac-admin-1/NAMD/2.14/foss-2019b-mpi/NAMD_2.14_Source/charm-6.10.2/mpi-linux-x86_64-mpicxx/tmp | |
Command g++ -m64 -fPIC -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I../bin/../include -D__CHARMC__=1 -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c ../../src/xlat-i/xi-SdagCollection.C -o xi-SdagCollection.o returned error code 1 | |
charmc exiting... | |
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c -o CaseList.o ../../src/xlat-i/sdag/constructs/CaseList.C | |
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c -o Else.o ../../src/xlat-i/sdag/constructs/Else.C | |
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c -o Forall.o ../../src/xlat-i/sdag/constructs/Forall.C | |
In file included from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/uniform_int_dist.h:35, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/stl_algo.h:66, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/algorithm:62, | |
from ../../src/xlat-i/xi-AstNode.h:5, | |
from ../../src/xlat-i/xi-symbol.h:9, | |
from ../../src/xlat-i/sdag/CStateVar.h:4, | |
from ../../src/xlat-i/sdag/CEntry.C:2: | |
/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/limits:1602:7: internal compiler error: Illegal instruction | |
max() _GLIBCXX_USE_NOEXCEPT { return __FLT_MAX__; } | |
^~~ | |
In file included from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/uniform_int_dist.h:35, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/stl_algo.h:66, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/algorithm:62, | |
from ../../src/xlat-i/xi-AstNode.h:5, | |
from ../../src/xlat-i/xi-symbol.h:9, | |
from ../../src/xlat-i/sdag/CParsedFile.h:7, | |
from ../../src/xlat-i/sdag/CParsedFile.C:1: | |
/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/limits:1602:7: internal compiler error: Illegal instruction | |
max() _GLIBCXX_USE_NOEXCEPT { return __FLT_MAX__; } | |
^~~ | |
In file included from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/uniform_int_dist.h:35, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/stl_algo.h:66, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/algorithm:62, | |
from ../../src/xlat-i/xi-AstNode.h:5, | |
from ../../src/xlat-i/xi-Construct.h:4, | |
from ../../src/xlat-i/xi-Template.h:4, | |
from ../../src/xlat-i/xi-util.C:1: | |
/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/limits:1602:7: internal compiler error: Illegal instruction | |
max() _GLIBCXX_USE_NOEXCEPT { return __FLT_MAX__; } | |
^~~ | |
In file included from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/uniform_int_dist.h:35, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/stl_algo.h:66, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/algorithm:62, | |
from ../../src/xlat-i/xi-AstNode.h:5, | |
from ../../src/xlat-i/xi-symbol.h:9, | |
from ../../src/xlat-i/sdag/CParsedFile.h:7, | |
from ../../src/xlat-i/sdag/CSdagConstruct.C:1: | |
/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/limits:1602:7: internal compiler error: Illegal instruction | |
max() _GLIBCXX_USE_NOEXCEPT { return __FLT_MAX__; } | |
^~~ | |
In file included from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/uniform_int_dist.h:35, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/stl_algo.h:66, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/algorithm:62, | |
from ../../src/xlat-i/xi-AstNode.h:5, | |
from ../../src/xlat-i/xi-symbol.h:9, | |
from ../../src/xlat-i/sdag/CStateVar.h:4, | |
from ../../src/xlat-i/sdag/CStateVar.C:1: | |
/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/limits:1602:7: internal compiler error: Illegal instruction | |
max() _GLIBCXX_USE_NOEXCEPT { return __FLT_MAX__; } | |
^~~ | |
0xbb802f crash_signal | |
../../gcc/toplev.c:325 | |
Please submit a full bug report, | |
with preprocessed source if appropriate. | |
Please include the complete backtrace with any bug report. | |
See <https://gcc.gnu.org/bugs/> for instructions. | |
Fatal Error by charmc in directory /dev/shm/build-edmondac-admin/edmondac-admin-1/NAMD/2.14/foss-2019b-mpi/NAMD_2.14_Source/charm-6.10.2/mpi-linux-x86_64-mpicxx/tmp | |
Command g++ -m64 -fPIC -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I../bin/../include -D__CHARMC__=1 -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c ../../src/xlat-i/sdag/CEntry.C -o CEntry.o returned error code 1 | |
charmc exiting... | |
In file included from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/uniform_int_dist.h:35, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/stl_algo.h:66, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/algorithm:62, | |
from ../../src/xlat-i/xi-AstNode.h:5, | |
from ../../src/xlat-i/xi-symbol.h:9, | |
from ../../src/xlat-i/sdag/CParsedFile.h:7, | |
from ../../src/xlat-i/sdag/constructs/Case.h:4, | |
from ../../src/xlat-i/sdag/constructs/Case.C:1: | |
/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/limits:1602:7: internal compiler error: Illegal instruction | |
max() _GLIBCXX_USE_NOEXCEPT { return __FLT_MAX__; } | |
^~~ | |
In file included from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/uniform_int_dist.h:35, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/stl_algo.h:66, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/algorithm:62, | |
from ../../src/xlat-i/xi-AstNode.h:5, | |
from ../../src/xlat-i/xi-symbol.h:9, | |
from ../../src/xlat-i/sdag/CParsedFile.h:7, | |
from ../../src/xlat-i/sdag/constructs/Serial.h:4, | |
from ../../src/xlat-i/sdag/constructs/Serial.C:1: | |
/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/limits:1602:7: internal compiler error: Illegal instruction | |
max() _GLIBCXX_USE_NOEXCEPT { return __FLT_MAX__; } | |
^~~ | |
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c -o For.o ../../src/xlat-i/sdag/constructs/For.C | |
0xbb802f crash_signal | |
../../gcc/toplev.c:325 | |
Please submit a full bug report, | |
with preprocessed source if appropriate. | |
Please include the complete backtrace with any bug report. | |
See <https://gcc.gnu.org/bugs/> for instructions. | |
Fatal Error by charmc in directory /dev/shm/build-edmondac-admin/edmondac-admin-1/NAMD/2.14/foss-2019b-mpi/NAMD_2.14_Source/charm-6.10.2/mpi-linux-x86_64-mpicxx/tmp | |
Command g++ -m64 -fPIC -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I../bin/../include -D__CHARMC__=1 -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c ../../src/xlat-i/sdag/CParsedFile.C -o CParsedFile.o returned error code 1 | |
charmc exiting... | |
0xbb802f crash_signal | |
../../gcc/toplev.c:325 | |
Please submit a full bug report, | |
with preprocessed source if appropriate. | |
Please include the complete backtrace with any bug report. | |
See <https://gcc.gnu.org/bugs/> for instructions. | |
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c -o If.o ../../src/xlat-i/sdag/constructs/If.C | |
Fatal Error by charmc in directory /dev/shm/build-edmondac-admin/edmondac-admin-1/NAMD/2.14/foss-2019b-mpi/NAMD_2.14_Source/charm-6.10.2/mpi-linux-x86_64-mpicxx/tmp | |
Command g++ -m64 -fPIC -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I../bin/../include -D__CHARMC__=1 -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c ../../src/xlat-i/xi-util.C -o xi-util.o returned error code 1 | |
charmc exiting... | |
In file included from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/uniform_int_dist.h:35, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/stl_algo.h:66, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/algorithm:62, | |
from ../../src/xlat-i/xi-AstNode.h:5, | |
from ../../src/xlat-i/xi-symbol.h:9, | |
from ../../src/xlat-i/sdag/CStateVar.h:4, | |
from ../../src/xlat-i/xi-BlockConstruct.h:4, | |
from ../../src/xlat-i/sdag/constructs/CaseList.h:4, | |
from ../../src/xlat-i/sdag/constructs/CaseList.C:1: | |
/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/limits:1602:7: internal compiler error: Illegal instruction | |
max() _GLIBCXX_USE_NOEXCEPT { return __FLT_MAX__; } | |
^~~ | |
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c -o IntExpr.o ../../src/xlat-i/sdag/constructs/IntExpr.C | |
0xbb802f crash_signal | |
../../gcc/toplev.c:325 | |
Please submit a full bug report, | |
with preprocessed source if appropriate. | |
Please include the complete backtrace with any bug report. | |
See <https://gcc.gnu.org/bugs/> for instructions. | |
0xbb802f crash_signal | |
../../gcc/toplev.c:325 | |
Please submit a full bug report, | |
with preprocessed source if appropriate. | |
Please include the complete backtrace with any bug report. | |
See <https://gcc.gnu.org/bugs/> for instructions. | |
Fatal Error by charmc in directory /dev/shm/build-edmondac-admin/edmondac-admin-1/NAMD/2.14/foss-2019b-mpi/NAMD_2.14_Source/charm-6.10.2/mpi-linux-x86_64-mpicxx/tmp | |
Fatal Error by charmc in directory /dev/shm/build-edmondac-admin/edmondac-admin-1/NAMD/2.14/foss-2019b-mpi/NAMD_2.14_Source/charm-6.10.2/mpi-linux-x86_64-mpicxx/tmp | |
Command g++ -m64 -fPIC -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I../bin/../include -D__CHARMC__=1 -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c ../../src/xlat-i/sdag/CSdagConstruct.C -o CSdagConstruct.o returned error code 1 | |
charmc exiting... | |
Command g++ -m64 -fPIC -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I../bin/../include -D__CHARMC__=1 -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c ../../src/xlat-i/sdag/CStateVar.C -o CStateVar.o returned error code 1 | |
charmc exiting... | |
0xbb802f crash_signal | |
../../gcc/toplev.c:325 | |
Please submit a full bug report, | |
with preprocessed source if appropriate. | |
Please include the complete backtrace with any bug report. | |
See <https://gcc.gnu.org/bugs/> for instructions. | |
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c -o OList.o ../../src/xlat-i/sdag/constructs/OList.C | |
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c -o Overlap.o ../../src/xlat-i/sdag/constructs/Overlap.C | |
Fatal Error by charmc in directory /dev/shm/build-edmondac-admin/edmondac-admin-1/NAMD/2.14/foss-2019b-mpi/NAMD_2.14_Source/charm-6.10.2/mpi-linux-x86_64-mpicxx/tmp | |
Command g++ -m64 -fPIC -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I../bin/../include -D__CHARMC__=1 -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c ../../src/xlat-i/sdag/constructs/Case.C -o Case.o returned error code 1 | |
charmc exiting... | |
0xbb802f crash_signal | |
../../gcc/toplev.c:325 | |
Please submit a full bug report, | |
with preprocessed source if appropriate. | |
Please include the complete backtrace with any bug report. | |
See <https://gcc.gnu.org/bugs/> for instructions. | |
Fatal Error by charmc in directory /dev/shm/build-edmondac-admin/edmondac-admin-1/NAMD/2.14/foss-2019b-mpi/NAMD_2.14_Source/charm-6.10.2/mpi-linux-x86_64-mpicxx/tmp | |
Command g++ -m64 -fPIC -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I../bin/../include -D__CHARMC__=1 -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c ../../src/xlat-i/sdag/constructs/Serial.C -o Serial.o returned error code 1 | |
charmc exiting... | |
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c -o SdagEntry.o ../../src/xlat-i/sdag/constructs/SdagEntry.C | |
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c -o SList.o ../../src/xlat-i/sdag/constructs/SList.C | |
0xbb802f crash_signal | |
../../gcc/toplev.c:325 | |
Please submit a full bug report, | |
with preprocessed source if appropriate. | |
Please include the complete backtrace with any bug report. | |
See <https://gcc.gnu.org/bugs/> for instructions. | |
Fatal Error by charmc in directory /dev/shm/build-edmondac-admin/edmondac-admin-1/NAMD/2.14/foss-2019b-mpi/NAMD_2.14_Source/charm-6.10.2/mpi-linux-x86_64-mpicxx/tmp | |
Command g++ -m64 -fPIC -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I../bin/../include -D__CHARMC__=1 -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c ../../src/xlat-i/sdag/constructs/CaseList.C -o CaseList.o returned error code 1 | |
charmc exiting... | |
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c -o Template.o ../../src/xlat-i/sdag/constructs/Template.C | |
In file included from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/uniform_int_dist.h:35, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/stl_algo.h:66, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/algorithm:62, | |
from ../../src/xlat-i/xi-AstNode.h:5, | |
from ../../src/xlat-i/xi-symbol.h:9, | |
from ../../src/xlat-i/sdag/CStateVar.h:4, | |
from ../../src/xlat-i/xi-BlockConstruct.h:4, | |
from ../../src/xlat-i/sdag/constructs/Forall.h:4, | |
from ../../src/xlat-i/sdag/constructs/Forall.C:1: | |
/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/limits:1602:7: internal compiler error: Illegal instruction | |
max() _GLIBCXX_USE_NOEXCEPT { return __FLT_MAX__; } | |
^~~ | |
In file included from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/uniform_int_dist.h:35, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/stl_algo.h:66, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/algorithm:62, | |
from ../../src/xlat-i/xi-AstNode.h:5, | |
from ../../src/xlat-i/xi-symbol.h:9, | |
from ../../src/xlat-i/sdag/CParsedFile.h:7, | |
from ../../src/xlat-i/sdag/constructs/Else.C:1: | |
/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/limits:1602:7: internal compiler error: Illegal instruction | |
max() _GLIBCXX_USE_NOEXCEPT { return __FLT_MAX__; } | |
^~~ | |
0xbb802f crash_signal | |
../../gcc/toplev.c:325 | |
Please submit a full bug report, | |
with preprocessed source if appropriate. | |
Please include the complete backtrace with any bug report. | |
See <https://gcc.gnu.org/bugs/> for instructions. | |
Fatal Error by charmc in directory /dev/shm/build-edmondac-admin/edmondac-admin-1/NAMD/2.14/foss-2019b-mpi/NAMD_2.14_Source/charm-6.10.2/mpi-linux-x86_64-mpicxx/tmp | |
Command g++ -m64 -fPIC -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I../bin/../include -D__CHARMC__=1 -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c ../../src/xlat-i/sdag/constructs/Forall.C -o Forall.o returned error code 1 | |
charmc exiting... | |
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c -o When.o ../../src/xlat-i/sdag/constructs/When.C | |
0xbb802f crash_signal | |
../../gcc/toplev.c:325 | |
Please submit a full bug report, | |
with preprocessed source if appropriate. | |
Please include the complete backtrace with any bug report. | |
See <https://gcc.gnu.org/bugs/> for instructions. | |
Fatal Error by charmc in directory /dev/shm/build-edmondac-admin/edmondac-admin-1/NAMD/2.14/foss-2019b-mpi/NAMD_2.14_Source/charm-6.10.2/mpi-linux-x86_64-mpicxx/tmp | |
Command g++ -m64 -fPIC -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I../bin/../include -D__CHARMC__=1 -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c ../../src/xlat-i/sdag/constructs/Else.C -o Else.o returned error code 1 | |
charmc exiting... | |
../bin/charmc -host -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c -o While.o ../../src/xlat-i/sdag/constructs/While.C | |
In file included from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/uniform_int_dist.h:35, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/stl_algo.h:66, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/algorithm:62, | |
from ../../src/xlat-i/xi-AstNode.h:5, | |
from ../../src/xlat-i/xi-symbol.h:9, | |
from ../../src/xlat-i/sdag/CStateVar.h:4, | |
from ../../src/xlat-i/xi-BlockConstruct.h:4, | |
from ../../src/xlat-i/sdag/constructs/If.h:4, | |
from ../../src/xlat-i/sdag/constructs/If.C:1: | |
/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/limits:1602:7: internal compiler error: Illegal instruction | |
max() _GLIBCXX_USE_NOEXCEPT { return __FLT_MAX__; } | |
^~~ | |
In file included from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/uniform_int_dist.h:35, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/stl_algo.h:66, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/algorithm:62, | |
from ../../src/xlat-i/xi-AstNode.h:5, | |
from ../../src/xlat-i/xi-symbol.h:9, | |
from ../../src/xlat-i/sdag/CParsedFile.h:7, | |
from ../../src/xlat-i/sdag/constructs/For.h:4, | |
from ../../src/xlat-i/sdag/constructs/For.C:1: | |
/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/limits:1602:7: internal compiler error: Illegal instruction | |
max() _GLIBCXX_USE_NOEXCEPT { return __FLT_MAX__; } | |
^~~ | |
In file included from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/uniform_int_dist.h:35, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/stl_algo.h:66, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/algorithm:62, | |
from ../../src/xlat-i/xi-AstNode.h:5, | |
from ../../src/xlat-i/xi-symbol.h:9, | |
from ../../src/xlat-i/sdag/CStateVar.h:4, | |
from ../../src/xlat-i/sdag/constructs/SdagEntry.C:1: | |
/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/limits:1602:7: internal compiler error: Illegal instruction | |
max() _GLIBCXX_USE_NOEXCEPT { return __FLT_MAX__; } | |
^~~ | |
In file included from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/uniform_int_dist.h:35, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/stl_algo.h:66, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/algorithm:62, | |
from ../../src/xlat-i/xi-AstNode.h:5, | |
from ../../src/xlat-i/xi-symbol.h:9, | |
from ../../src/xlat-i/sdag/CParsedFile.h:7, | |
from ../../src/xlat-i/sdag/constructs/OList.C:1: | |
/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/limits:1602:7: internal compiler error: Illegal instruction | |
max() _GLIBCXX_USE_NOEXCEPT { return __FLT_MAX__; } | |
^~~ | |
In file included from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/uniform_int_dist.h:35, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/stl_algo.h:66, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/algorithm:62, | |
from ../../src/xlat-i/xi-AstNode.h:5, | |
from ../../src/xlat-i/xi-symbol.h:9, | |
from ../../src/xlat-i/sdag/CParsedFile.h:7, | |
from ../../src/xlat-i/sdag/constructs/Overlap.h:4, | |
from ../../src/xlat-i/sdag/constructs/Overlap.C:1: | |
/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/limits:1602:7: internal compiler error: Illegal instruction | |
max() _GLIBCXX_USE_NOEXCEPT { return __FLT_MAX__; } | |
^~~ | |
0xbb802f crash_signal | |
../../gcc/toplev.c:325 | |
Please submit a full bug report, | |
with preprocessed source if appropriate. | |
Please include the complete backtrace with any bug report. | |
See <https://gcc.gnu.org/bugs/> for instructions. | |
Fatal Error by charmc in directory /dev/shm/build-edmondac-admin/edmondac-admin-1/NAMD/2.14/foss-2019b-mpi/NAMD_2.14_Source/charm-6.10.2/mpi-linux-x86_64-mpicxx/tmp | |
Command g++ -m64 -fPIC -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I../bin/../include -D__CHARMC__=1 -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c ../../src/xlat-i/sdag/constructs/If.C -o If.o returned error code 1 | |
charmc exiting... | |
0xbb802f crash_signal | |
../../gcc/toplev.c:325 | |
Please submit a full bug report, | |
with preprocessed source if appropriate. | |
Please include the complete backtrace with any bug report. | |
See <https://gcc.gnu.org/bugs/> for instructions. | |
0xbb802f crash_signal | |
../../gcc/toplev.c:325 | |
Please submit a full bug report, | |
with preprocessed source if appropriate. | |
Please include the complete backtrace with any bug report. | |
See <https://gcc.gnu.org/bugs/> for instructions. | |
Fatal Error by charmc in directory /dev/shm/build-edmondac-admin/edmondac-admin-1/NAMD/2.14/foss-2019b-mpi/NAMD_2.14_Source/charm-6.10.2/mpi-linux-x86_64-mpicxx/tmp | |
Command g++ -m64 -fPIC -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I../bin/../include -D__CHARMC__=1 -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c ../../src/xlat-i/sdag/constructs/For.C -o For.o returned error code 1 | |
charmc exiting... | |
0xbb802f crash_signal | |
../../gcc/toplev.c:325 | |
Fatal Error by charmc in directory /dev/shm/build-edmondac-admin/edmondac-admin-1/NAMD/2.14/foss-2019b-mpi/NAMD_2.14_Source/charm-6.10.2/mpi-linux-x86_64-mpicxx/tmp | |
Please submit a full bug report, | |
with preprocessed source if appropriate. | |
Please include the complete backtrace with any bug report. | |
See <https://gcc.gnu.org/bugs/> for instructions. | |
Command g++ -m64 -fPIC -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I../bin/../include -D__CHARMC__=1 -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c ../../src/xlat-i/sdag/constructs/SdagEntry.C -o SdagEntry.o returned error code 1 | |
charmc exiting... | |
Fatal Error by charmc in directory /dev/shm/build-edmondac-admin/edmondac-admin-1/NAMD/2.14/foss-2019b-mpi/NAMD_2.14_Source/charm-6.10.2/mpi-linux-x86_64-mpicxx/tmp | |
Command g++ -m64 -fPIC -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I../bin/../include -D__CHARMC__=1 -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c ../../src/xlat-i/sdag/constructs/OList.C -o OList.o returned error code 1 | |
charmc exiting... | |
gmake[1]: *** No rule to make target `xi-main.o', needed by `../bin/charmxi'. Stop. | |
gmake[1]: *** Waiting for unfinished jobs.... | |
0xbb802f crash_signal | |
../../gcc/toplev.c:325 | |
Please submit a full bug report, | |
with preprocessed source if appropriate. | |
Please include the complete backtrace with any bug report. | |
See <https://gcc.gnu.org/bugs/> for instructions. | |
Fatal Error by charmc in directory /dev/shm/build-edmondac-admin/edmondac-admin-1/NAMD/2.14/foss-2019b-mpi/NAMD_2.14_Source/charm-6.10.2/mpi-linux-x86_64-mpicxx/tmp | |
Command g++ -m64 -fPIC -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I../bin/../include -D__CHARMC__=1 -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c ../../src/xlat-i/sdag/constructs/Overlap.C -o Overlap.o returned error code 1 | |
charmc exiting... | |
In file included from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/uniform_int_dist.h:35, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/stl_algo.h:66, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/algorithm:62, | |
from ../../src/xlat-i/xi-AstNode.h:5, | |
from ../../src/xlat-i/xi-symbol.h:9, | |
from ../../src/xlat-i/sdag/CStateVar.h:4, | |
from ../../src/xlat-i/xi-BlockConstruct.h:4, | |
from ../../src/xlat-i/sdag/constructs/Template.h:4, | |
from ../../src/xlat-i/sdag/constructs/Template.C:1: | |
/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/limits:1602:7: internal compiler error: Illegal instruction | |
max() _GLIBCXX_USE_NOEXCEPT { return __FLT_MAX__; } | |
^~~ | |
0xbb802f crash_signal | |
../../gcc/toplev.c:325 | |
Please submit a full bug report, | |
with preprocessed source if appropriate. | |
Please include the complete backtrace with any bug report. | |
See <https://gcc.gnu.org/bugs/> for instructions. | |
Fatal Error by charmc in directory /dev/shm/build-edmondac-admin/edmondac-admin-1/NAMD/2.14/foss-2019b-mpi/NAMD_2.14_Source/charm-6.10.2/mpi-linux-x86_64-mpicxx/tmp | |
Command g++ -m64 -fPIC -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I../bin/../include -D__CHARMC__=1 -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c ../../src/xlat-i/sdag/constructs/Template.C -o Template.o returned error code 1 | |
charmc exiting... | |
In file included from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/uniform_int_dist.h:35, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/stl_algo.h:66, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/algorithm:62, | |
from ../../src/xlat-i/xi-AstNode.h:5, | |
from ../../src/xlat-i/xi-symbol.h:9, | |
from ../../src/xlat-i/sdag/CParsedFile.h:7, | |
from ../../src/xlat-i/sdag/constructs/When.h:4, | |
from ../../src/xlat-i/sdag/constructs/When.C:1: | |
/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/limits:1602:7: internal compiler error: Illegal instruction | |
max() _GLIBCXX_USE_NOEXCEPT { return __FLT_MAX__; } | |
^~~ | |
In file included from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/uniform_int_dist.h:35, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/bits/stl_algo.h:66, | |
from /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/algorithm:62, | |
from ../../src/xlat-i/xi-AstNode.h:5, | |
from ../../src/xlat-i/xi-symbol.h:9, | |
from ../../src/xlat-i/sdag/CStateVar.h:4, | |
from ../../src/xlat-i/xi-BlockConstruct.h:4, | |
from ../../src/xlat-i/sdag/constructs/While.h:4, | |
from ../../src/xlat-i/sdag/constructs/While.C:1: | |
/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/GCCcore/8.3.0/include/c++/8.3.0/limits:1602:7: internal compiler error: Illegal instruction | |
max() _GLIBCXX_USE_NOEXCEPT { return __FLT_MAX__; } | |
^~~ | |
0xbb802f crash_signal | |
../../gcc/toplev.c:325 | |
Please submit a full bug report, | |
with preprocessed source if appropriate. | |
Please include the complete backtrace with any bug report. | |
See <https://gcc.gnu.org/bugs/> for instructions. | |
Fatal Error by charmc in directory /dev/shm/build-edmondac-admin/edmondac-admin-1/NAMD/2.14/foss-2019b-mpi/NAMD_2.14_Source/charm-6.10.2/mpi-linux-x86_64-mpicxx/tmp | |
Command g++ -m64 -fPIC -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I../bin/../include -D__CHARMC__=1 -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c ../../src/xlat-i/sdag/constructs/When.C -o When.o returned error code 1 | |
charmc exiting... | |
0xbb802f crash_signal | |
../../gcc/toplev.c:325 | |
Please submit a full bug report, | |
with preprocessed source if appropriate. | |
Please include the complete backtrace with any bug report. | |
See <https://gcc.gnu.org/bugs/> for instructions. | |
Fatal Error by charmc in directory /dev/shm/build-edmondac-admin/edmondac-admin-1/NAMD/2.14/foss-2019b-mpi/NAMD_2.14_Source/charm-6.10.2/mpi-linux-x86_64-mpicxx/tmp | |
Command g++ -m64 -fPIC -fPIC -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -I../bin/../include -D__CHARMC__=1 -I../../src/xlat-i/ -I../../src/xlat-i/sdag/ -I. -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/FFTW/3.3.8-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/ScaLAPACK/2.0.2-gompi-2019b/include -I/rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/OpenBLAS/0.3.7-GCC-8.3.0/include -c ../../src/xlat-i/sdag/constructs/While.C -o While.o returned error code 1 | |
charmc exiting... | |
gmake[1]: Leaving directory `/dev/shm/build-edmondac-admin/edmondac-admin-1/NAMD/2.14/foss-2019b-mpi/NAMD_2.14_Source/charm-6.10.2/mpi-linux-x86_64-mpicxx/tmp' | |
gmake: *** [headers] Error 2 | |
------------------------------------------------- | |
Charm++ NOT BUILT. Either cd into mpi-linux-x86_64-mpicxx/tmp and try | |
to resolve the problems yourself, visit | |
http://charm.cs.illinois.edu/ | |
for more information. Otherwise, email the developers at [email protected] | |
(at easybuild/tools/run.py:533 in parse_cmd_output) | |
== 2020-08-14 15:15:12,614 config.py:569 DEBUG software install path as specified by 'installpath' and 'subdir_software': /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software | |
== 2020-08-14 15:15:12,615 filetools.py:1605 INFO Removing lock /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/.locks/_rds_bear-apps_devel_2020a_edmondac-eb-1_EL7_EL7-haswell_software_NAMD_2.14-foss-2019b-mpi.lock... | |
== 2020-08-14 15:15:12,616 filetools.py:330 INFO Path /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/.locks/_rds_bear-apps_devel_2020a_edmondac-eb-1_EL7_EL7-haswell_software_NAMD_2.14-foss-2019b-mpi.lock successfully removed. | |
== 2020-08-14 15:15:12,616 filetools.py:1609 INFO Lock removed: /rds/bear-apps/devel/2020a/edmondac-eb-1/EL7/EL7-haswell/software/.locks/_rds_bear-apps_devel_2020a_edmondac-eb-1_EL7_EL7-haswell_software_NAMD_2.14-foss-2019b-mpi.lock | |
== 2020-08-14 15:15:12,617 easyblock.py:3238 WARNING build failed (first 300 chars): cmd "./build charm++ mpi-linux-x86_64 mpicxx --with-production --with-numa -j10 '-O2 -ftree-vectorize -march=native -fno-math-errno -fPIC -DMPICH_IGNORE_CXX_SEEK -fpermissive'" exited with exit code 2 and output: | |
Selected Compiler: mpicxx | |
Selected Options: | |
Creating dir: mpi-linux-x86_64-mpicxx | |
Cre | |
== 2020-08-14 15:15:12,617 easyblock.py:295 INFO Closing log for application name NAMD version 2.14 |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment