Skip to content

Instantly share code, notes, and snippets.

View edmondac's full-sized avatar

Ed edmondac

View GitHub Profile
@edmondac
edmondac / R-3.6.2-fosscuda-2019b_partial.log
Created December 18, 2019 13:58
(partial) EasyBuild log for failed build of /home/easybuild/2019b/tmp/eb-vfg87rq5/files_pr9519/r/R/R-3.6.2-fosscuda-2019b.eb (PR #9519)
('ctmle', '0.1.2', {
'checksums': ['e3fa0722cd87aa0e0b209c2dddf3fc44c6d09993f1e66a6c43285fe950948161'],
}),
('BayesPen', '1.0', {
'checksums': ['772df9ae12cd8a3da1d5b7d1f1629602c7693f0eb03945784df2809e2bb061b0'],
}),
('inline', '0.3.15', {
'checksums': ['ff043fe13c1991a3b285bed256ff4a9c0ba10bee764225a34b285875b7d69c68'],
}),
('BMA', '3.18.11', {
@edmondac
edmondac / easybuild_test_report_easyconfigs_pr9519_20195818-UTC-13-58-57.md
Created December 18, 2019 13:58
EasyBuild test report for easyconfigs PR #9519

Test report for easybuilders/easybuild-easyconfigs#9519

Test result

Build succeeded for 7 out of 8 (8 easyconfigs in this PR)

Overview of tested easyconfigs (in order)

  • SUCCESS Ghostscript-9.50-GCCcore-8.3.0.eb
  • SUCCESS ICU-64.2-GCCcore-8.3.0.eb
  • SUCCESS ImageMagick-7.0.9-5-GCCcore-8.3.0.eb
  • SUCCESS LittleCMS-2.9-GCCcore-8.3.0.eb
@edmondac
edmondac / ImageMagick-7.0.9-5-GCCcore-8.3.0_partial.log
Created December 18, 2019 14:10
(partial) EasyBuild log for failed build of /scratch/edmondac-admin/eb-L_uRjH/files_pr9519/i/ImageMagick/ImageMagick-7.0.9-5-GCCcore-8.3.0.eb (PR #9519)
== 2019-12-18 14:08:56,508 easyblock.py:280 INFO This is EasyBuild 4.1.0-r97d65616e853a0e3574410acb6e753b0926fdf4b (framework: 4.1.0-r97d65616e853a0e3574410acb6e753b0926fdf4b, easyblocks: 4.1.0-r5b7956d13ff1b48751a9c86d326a9fa863756bbb) on host bear-pg0212u15b.bear.cluster.
== 2019-12-18 14:08:56,509 easyblock.py:286 INFO This is easyblock ConfigureMake from module easybuild.easyblocks.generic.configuremake (/rds/bear-apps/devel/2019b/edmondac-eb-1/src/easybuild-easyblocks/easybuild/easyblocks/generic/configuremake.pyo)
== 2019-12-18 14:08:56,509 easyblock.py:843 INFO Build dir set to /dev/shm/build-edmondac-admin/edmondac-admin-1/ImageMagick/7.0.9-5/GCCcore-8.3.0
== 2019-12-18 14:08:56,509 easyblock.py:903 INFO Software install dir set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/software/ImageMagick/7.0.9-5-GCCcore-8.3.0
== 2019-12-18 14:08:56,510 easyblock.py:908 INFO Module install dir set to /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/modules/all
== 2019-12-18 14:08:56,510 eas
@edmondac
edmondac / R-3.6.2-foss-2019b_partial.log
Created December 18, 2019 14:10
(partial) EasyBuild log for failed build of /scratch/edmondac-admin/eb-L_uRjH/files_pr9519/r/R/R-3.6.2-foss-2019b.eb (PR #9519)
== 2019-12-18 14:10:36,579 easyblock.py:529 INFO sha256 checksum for /rds/bear-sysadmin/configmgmt/easybuild/sources/r/R/extensions/asnipe_1.1.12.tar.gz: 3a1f166f1c71b5877a2acca1384ec6c9b430b67af67ef26125f2abbb53c66206
== 2019-12-18 14:10:36,580 easyblock.py:535 INFO Checksum for extension source asnipe_1.1.12.tar.gz verified
== 2019-12-18 14:10:36,580 easyblock.py:457 INFO Fetched extension patches: []
== 2019-12-18 14:10:36,581 tools.py:266 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/venv-dev-2019b-1/bin/eb
== 2019-12-18 14:10:36,581 tools.py:282 INFO Not considering /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/venv-dev-2019b-1 (no easybuild/easyconfigs subdir found)
== 2019-12-18 14:10:36,583 easyblock.py:671 INFO Found file liquidSVM_1.2.4.tar.gz at /rds/bear-sysadmin/configmgmt/easybuild/sources/r/R/extensions/liquidSVM_1.2.4.tar.gz
== 2019-12-18 14:10:36,626 easyblock.py:529 INFO md5 checksum for /rds/bear-sysadmin/configmg
@edmondac
edmondac / R-3.6.2-fosscuda-2019b_partial.log
Created December 18, 2019 14:11
(partial) EasyBuild log for failed build of /scratch/edmondac-admin/eb-L_uRjH/files_pr9519/r/R/R-3.6.2-fosscuda-2019b.eb (PR #9519)
== 2019-12-18 14:10:44,765 tools.py:266 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/venv-dev-2019b-1/bin/eb
== 2019-12-18 14:10:44,765 tools.py:282 INFO Not considering /rds/bear-apps/devel/2019b/edmondac-eb-1/EL7/EL7-haswell/venv-dev-2019b-1 (no easybuild/easyconfigs subdir found)
== 2019-12-18 14:10:44,766 easyblock.py:671 INFO Found file MIIVsem_0.5.4.tar.gz at /rds/bear-sysadmin/configmgmt/easybuild/sources/r/R/extensions/MIIVsem_0.5.4.tar.gz
== 2019-12-18 14:10:44,767 easyblock.py:529 INFO md5 checksum for /rds/bear-sysadmin/configmgmt/easybuild/sources/r/R/extensions/MIIVsem_0.5.4.tar.gz: 378bcb7cabfda4166aa12ca5f5658a5a
== 2019-12-18 14:10:44,767 easyblock.py:529 INFO sha256 checksum for /rds/bear-sysadmin/configmgmt/easybuild/sources/r/R/extensions/MIIVsem_0.5.4.tar.gz: de918d6b1820c59a7d4324342ad15444c2370ce1d843397a136c307397ed64b9
== 2019-12-18 14:10:44,768 easyblock.py:535 INFO Checksum for extension source MIIVsem_0.5.4.tar.gz v
@edmondac
edmondac / easybuild_test_report_easyconfigs_pr9519_20191118-UTC-14-11-03.md
Created December 18, 2019 14:11
EasyBuild test report for easyconfigs PR #9519
@edmondac
edmondac / R-3.6.2-foss-2019b_partial.log
Created December 18, 2019 23:23
(partial) EasyBuild log for failed build of /scratch/edmondac-admin/eb-n8oE45/files_pr9519/r/R/R-3.6.2-foss-2019b.eb (PR #9519)
}),
('compositions', '1.40-3', {
'checksums': ['e42d90950a63aa7f707bc5025dbf265b63fc02a5b7137bc71836b8bc625d7080'],
}),
('clustree', '0.4.1', {
'checksums': ['1d4c0c44826a656b649ce224f94a35fea808e9faef0d550646a0a9221a764e4b'],
}),
('plotly', '4.9.1', {
'checksums': ['85a08c64d1bf839786951b3574986eacce78dacd589f2bef4b38208e49554d3d'],
}),
@edmondac
edmondac / easybuild_test_report_easyconfigs_pr9519_20192418-UTC-23-24-12.md
Created December 18, 2019 23:24
EasyBuild test report for easyconfigs PR #9519

Test report for easybuilders/easybuild-easyconfigs#9519

Test result

Build succeeded for 16 out of 17 (8 easyconfigs in this PR)

Overview of tested easyconfigs (in order)

  • SUCCESS Ghostscript-9.50-GCCcore-8.3.0.eb
  • SUCCESS ICU-64.2-GCCcore-8.3.0.eb
  • SUCCESS LittleCMS-2.9-GCCcore-8.3.0.eb
  • SUCCESS libsndfile-1.0.28-GCCcore-8.3.0.eb
@edmondac
edmondac / easybuild_test_report_easyconfigs_pr9519_20191719-UTC-15-17-17.md
Created December 19, 2019 15:17
EasyBuild test report for easyconfigs PR #9519

Test report for easybuilders/easybuild-easyconfigs#9519

Test result

Build succeeded for 8 out of 8 (8 easyconfigs in this PR)

Overview of tested easyconfigs (in order)

  • SUCCESS Ghostscript-9.50-GCCcore-8.3.0.eb
  • SUCCESS ICU-64.2-GCCcore-8.3.0.eb
  • SUCCESS ImageMagick-7.0.9-5-GCCcore-8.3.0.eb
  • SUCCESS LittleCMS-2.9-GCCcore-8.3.0.eb
@edmondac
edmondac / R-3.6.2-fosscuda-2019b_partial.log
Created January 6, 2020 13:18
(partial) EasyBuild log for failed build of /scratch/edmondac-admin/eb-AyNpKz/files_pr9519/r/R/R-3.6.2-fosscuda-2019b.eb (PR #9519)
== 2020-01-06 13:18:46,565 easyblock.py:529 INFO sha256 checksum for /rds/bear-sysadmin/configmgmt/easybuild/sources/r/R/extensions/ctmle_0.1.2.tar.gz: e3fa0722cd87aa0e0b209c2dddf3fc44c6d09993f1e66a6c43285fe950948161
== 2020-01-06 13:18:46,566 easyblock.py:535 INFO Checksum for extension source ctmle_0.1.2.tar.gz verified
== 2020-01-06 13:18:46,567 easyblock.py:457 INFO Fetched extension patches: []
== 2020-01-06 13:18:46,567 filetools.py:404 INFO Command eb found at /rds/bear-apps/devel/github/edmondac-eb-contrib/EL7/EL7-cascadelake/venv-dev-github-contrib/bin/eb
== 2020-01-06 13:18:46,568 tools.py:264 INFO Location to 'eb' script (found via $PATH): /rds/bear-apps/devel/github/edmondac-eb-contrib/EL7/EL7-cascadelake/venv-dev-github-contrib/bin/eb
== 2020-01-06 13:18:46,568 tools.py:282 INFO Not considering /rds/bear-apps/devel/github/edmondac-eb-contrib/EL7/EL7-cascadelake/venv-dev-github-contrib (no easybuild/easyconfigs subdir found)
== 2020-01-06 13:18:46,571 easyblock.py:671 INFO Found file BayesPen_1.0.