Andy Gregorowicz eedrummer
eedrummer
/ freqs_of_matching_projs.js
Last active
November 3, 2021 14:45
Queries for looking into MongoDB at the CODI Linkage Agent
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| db.getCollection('match_groups').aggregate([{ | |
| $group: { | |
| _id:{$size:'$run_results'}, | |
| total: { $sum: 1 }, | |
| } | |
| }]) |
This file has been truncated, but you can view the full file.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| { | |
| "random": { | |
| "seed": 45202092906816, | |
| "nextNextGaussian": -0.2768758555544073, | |
| "haveNextNextGaussian": true | |
| }, | |
| "seed": -1284530909448198332, | |
| "populationSeed": 1635262516394, | |
| "lastUpdated": 1634914774356, | |
| "currentModules": [ |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| import csv | |
| import argparse | |
| from pathlib import Path | |
| parser = argparse.ArgumentParser(description='Tool for translating LINK_IDs back into PATIDs') | |
| parser.add_argument('--source', nargs=1, required=True, help='Source PII CSV file') | |
| parser.add_argument('--links', nargs=1, required=True, help='LINK_ID CSV file') | |
| args = parser.parse_args() | |
| source_file = Path(args.source[0]) |
eedrummer
/ generatesecret.py
Created
May 5, 2020 14:10
De-identification secret generation for CODI
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| from secrets import token_hex | |
| secret_bit_length = 128 | |
| deidentification_secret = token_hex(secret_bit_length) | |
| with open('deidentification_secret.txt', 'w', newline='') as secret_file: | |
| secret_file.write(deidentification_secret) |
eedrummer
/ Synthea-ws.ipynb
Created
October 11, 2019 16:02
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| require 'csv' | |
| require 'erb' | |
| comments = CSV.read('/Users/andrewg/Downloads/quickquery.csv', headers: true, quote_char: '|') | |
| submitters = comments.map {|c| c['Real Submitter']}.uniq.sort | |
| template = ERB.new <<-EOF | |
| <html> | |
| <head> |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| { | |
| "context":{ | |
| "patientId":"1288992", | |
| "encounterId":"89284", | |
| "orders":{ | |
| "resourceType":"Bundle", | |
| "entry":[ | |
| { | |
| "resource": { | |
| "resourceType": "DeviceRequest", |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| { | |
| "cards": [ | |
| { | |
| "summary": "Positive Airway Pressure (PAP) Devices: Complying with Documentation & Coverage Requirements", | |
| "indicator": "info", | |
| "source": { | |
| "label": "CMS" | |
| }, | |
| "links": [ | |
| { |
eedrummer
/ bp_control.json
Created
September 2, 2016 18:07
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| { | |
| "birthdate": 252478800, | |
| "conditions": [ | |
| { | |
| "anatomical_location": null, | |
| "anatomical_target": null, | |
| "causeOfDeath": null, | |
| "codes": { | |
| "ICD-10-CM": [ | |
| "I10" |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| { | |
| "birthdate": 252478800, | |
| "conditions": [ | |
| { | |
| "anatomical_location": null, | |
| "anatomical_target": null, | |
| "causeOfDeath": null, | |
| "codes": { | |
| "ICD-10-CM": [ | |
| "E10.10" |
NewerOlder