Keras Embedding explanation (in a benchmark form)

keras-embedding.py

"""
Created on Fri Mar 30 17:23:45 2018

Embeds one-hot encoder vector
i.e. [0] -> [1 0 0 0], [1] -> [0 1 0 0], [2] -> [0 0 1 0], so on

Using three approaches:
    1. Keras `Embedding` layer
    2. Keras `Dense` layer
    3. TensorFlow matmul
    
So you can see how it _could_ be implemented in a different way. Though you can see also performance penalties of all of them.    

And measures time and memory for each of those approaches
@author: [email protected]
"""
import keras, tensorflow as tf, numpy as np, matplotlib.pyplot as plt, keras.backend as K
import timeit, os, psutil, sys, gc
from keras.layers import Dense, Reshape, Embedding
from keras.losses import mean_squared_error
from memory_profiler import profile

NUM_CLASSES = 500

os.environ["CUDA_VISIBLE_DEVICES"]="0" # just a bugfix of Tensorflow on GPUs
np.set_printoptions(suppress=True, precision=4) # 9.97123123123e-10 -> 0.0000 :)

def make_report(mode='dense'):
        
    with tf.device('/cpu:0'):   # we use CPU to be able to access amount of memory
        tf.reset_default_graph()
        sess = tf.Session()
        K.set_session(sess)
        
        gc.collect()
        start_mem = psutil.Process(os.getpid()).memory_info().rss
        
        X_embed_np = np.arange(NUM_CLASSES).reshape(1, -1).astype(np.int32)
        X_dense_np = np.arange(NUM_CLASSES).reshape(1, -1).astype(np.float32)
        
        X_embed = tf.placeholder_with_default(X_embed_np, shape=X_embed_np.shape)
        X_dense = tf.placeholder_with_default(X_dense_np, shape=X_dense_np.shape)
        
        labels = np.eye(NUM_CLASSES).astype(np.float32)
        labels = tf.placeholder_with_default(labels, labels.shape)
        
        with sess.as_default():
            if mode == 'embed':
                preds = Embedding(NUM_CLASSES, output_dim=NUM_CLASSES)(X_embed)
            elif mode == 'matmul':
                W = tf.get_variable('W', shape=(NUM_CLASSES, NUM_CLASSES**2))
                matmul_preds = tf.matmul(X_dense, W)
                preds = tf.reshape(matmul_preds, (NUM_CLASSES, NUM_CLASSES))                
            elif mode == 'dense':
                dense = Dense(NUM_CLASSES**2, input_shape=(None,),)(X_dense)
                preds = Reshape((NUM_CLASSES, NUM_CLASSES))(dense)
                
            else: raise Exception('Invalid param mode: %s. Can be: embed|matmul|dense' % mode)
            
            loss = tf.reduce_sum( mean_squared_error(labels, preds) )
            minimizer = tf.train.AdamOptimizer().minimize(loss)
            
            sess.run(tf.global_variables_initializer())
        
            # report
            benchmarks_resuls = timeit.Timer(lambda: minimizer.run() ).repeat(3, 10)
            used_time = min( benchmarks_resuls )
            used_mem = psutil.Process(os.getpid()).memory_info().rss - start_mem
            return '%s time to train: %0.4f sec, loss: %0.4f, used mem: %0.4f MB' % (mode, used_time, loss.eval(), used_mem / 1024. / 1024. )
        
            
        sess.close()
        K.set_session(None)
        pass


print ( make_report('embed') )
print ( make_report('matmul') )
print ( make_report('dense') )