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ehermes/mvapich2.log

Created March 8, 2016 20:40
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mvapich2.log
*** buffer overflow detected ***: /home/ehermes/build/cp2k-3.0/exe/Linux-x86-64-intel-nolibs/cp2k_shell.popt terminated
======= Backtrace: =========
/lib64/libc.so.6(__fortify_fail+0x37)[0x39d4d02567]
/lib64/libc.so.6[0x39d4d00450]
/lib64/libc.so.6[0x39d4cff8a9]
/lib64/libc.so.6(_IO_default_xsputn+0xc9)[0x39d4c74639]
/lib64/libc.so.6(_IO_vfprintf+0x11d8)[0x39d4c451a8]
/lib64/libc.so.6(__vsprintf_chk+0x9d)[0x39d4cff94d]
/lib64/libc.so.6(__sprintf_chk+0x7f)[0x39d4cff88f]
/home/ehermes/build/cp2k-3.0/exe/Linux-x86-64-intel-nolibs/cp2k_shell.popt(for__compute_filename+0x9e3)[0x2cb8e03]
/home/ehermes/build/cp2k-3.0/exe/Linux-x86-64-intel-nolibs/cp2k_shell.popt(for__open_proc+0xc9)[0x2cbabc9]
/home/ehermes/build/cp2k-3.0/exe/Linux-x86-64-intel-nolibs/cp2k_shell.popt(for__open_default+0x36d)[0x2c7129d]
/home/ehermes/build/cp2k-3.0/exe/Linux-x86-64-intel-nolibs/cp2k_shell.popt(for_write_seq_fmt+0x529)[0x2c9f239]
/home/ehermes/build/cp2k-3.0/exe/Linux-x86-64-intel-nolibs/cp2k_shell.popt[0x410c8f]
/home/ehermes/build/cp2k-3.0/exe/Linux-x86-64-intel-nolibs/cp2k_shell.popt[0x40e51e]
/lib64/libc.so.6(__libc_start_main+0xfd)[0x39d4c1ed5d]
/home/ehermes/build/cp2k-3.0/exe/Linux-x86-64-intel-nolibs/cp2k_shell.popt[0x40e429]
======= Memory map: ========
00400000-02f7d000 r-xp 00000000 00:24 11623592094125328834 /home/ehermes/build/cp2k-3.0/exe/Linux-x86-64-intel-nolibs/cp2k_shell.popt
0317c000-03372000 rw-p 02b7c000 00:24 11623592094125328834 /home/ehermes/build/cp2k-3.0/exe/Linux-x86-64-intel-nolibs/cp2k_shell.popt
03372000-03646000 rw-p 00000000 00:00 0
03f97000-0516b000 rw-p 00000000 00:00 0 [heap]
39d4800000-39d4820000 r-xp 00000000 08:02 2097201 /lib64/ld-2.12.so
39d4a1f000-39d4a20000 r--p 0001f000 08:02 2097201 /lib64/ld-2.12.so
39d4a20000-39d4a21000 rw-p 00020000 08:02 2097201 /lib64/ld-2.12.so
39d4a21000-39d4a22000 rw-p 00000000 00:00 0
39d4c00000-39d4d8a000 r-xp 00000000 08:02 2097533 /lib64/libc-2.12.so
39d4d8a000-39d4f8a000 ---p 0018a000 08:02 2097533 /lib64/libc-2.12.so
39d4f8a000-39d4f8e000 r--p 0018a000 08:02 2097533 /lib64/libc-2.12.so
39d4f8e000-39d4f8f000 rw-p 0018e000 08:02 2097533 /lib64/libc-2.12.so
39d4f8f000-39d4f94000 rw-p 00000000 00:00 0
39d5000000-39d5017000 r-xp 00000000 08:02 2097537 /lib64/libpthread-2.12.so
39d5017000-39d5217000 ---p 00017000 08:02 2097537 /lib64/libpthread-2.12.so
39d5217000-39d5218000 r--p 00017000 08:02 2097537 /lib64/libpthread-2.12.so
39d5218000-39d5219000 rw-p 00018000 08:02 2097537 /lib64/libpthread-2.12.so
39d5219000-39d521d000 rw-p 00000000 00:00 0
39d5400000-39d5402000 r-xp 00000000 08:02 2097544 /lib64/libdl-2.12.so
39d5402000-39d5602000 ---p 00002000 08:02 2097544 /lib64/libdl-2.12.so
39d5602000-39d5603000 r--p 00002000 08:02 2097544 /lib64/libdl-2.12.so
39d5603000-39d5604000 rw-p 00003000 08:02 2097544 /lib64/libdl-2.12.so
39d5800000-39d580d000 r-xp 00000000 08:02 2520067 /usr/lib64/libibverbs.so.1.0.0
39d580d000-39d5a0c000 ---p 0000d000 08:02 2520067 /usr/lib64/libibverbs.so.1.0.0
39d5a0c000-39d5a0d000 rw-p 0000c000 08:02 2520067 /usr/lib64/libibverbs.so.1.0.0
39d5c00000-39d5c83000 r-xp 00000000 08:02 2097549 /lib64/libm-2.12.so
39d5c83000-39d5e82000 ---p 00083000 08:02 2097549 /lib64/libm-2.12.so
39d5e82000-39d5e83000 r--p 00082000 08:02 2097549 /lib64/libm-2.12.so
39d5e83000-39d5e84000 rw-p 00083000 08:02 2097549 /lib64/libm-2.12.so
39d6000000-39d6006000 r-xp 00000000 08:02 2519218 /usr/lib64/libibumad.so.3.0.3
39d6006000-39d6205000 ---p 00006000 08:02 2519218 /usr/lib64/libibumad.so.3.0.3
39d6205000-39d6206000 rw-p 00005000 08:02 2519218 /usr/lib64/libibumad.so.3.0.3
39d6400000-39d6413000 r-xp 00000000 08:02 2519329 /usr/lib64/librdmacm.so.1.0.0
39d6413000-39d6612000 ---p 00013000 08:02 2519329 /usr/lib64/librdmacm.so.1.0.0
39d6612000-39d6613000 rw-p 00012000 08:02 2519329 /usr/lib64/librdmacm.so.1.0.0
39d6613000-39d6614000 rw-p 00000000 00:00 0
39d6800000-39d6816000 r-xp 00000000 08:02 2097561 /lib64/libgcc_s-4.4.6-20120305.so.1
39d6816000-39d6a15000 ---p 00016000 08:02 2097561 /lib64/libgcc_s-4.4.6-20120305.so.1
39d6a15000-39d6a16000 rw-p 00015000 08:02 2097561 /lib64/libgcc_s-4.4.6-20120305.so.1
39db800000-39db949000 r-xp 00000000 08:02 2518993 /usr/lib64/libxml2.so.2.7.6
39db949000-39dbb48000 ---p 00149000 08:02 2518993 /usr/lib64/libxml2.so.2.7.6
39dbb48000-39dbb52000 rw-p 00148000 08:02 2518993 /usr/lib64/libxml2.so.2.7.6
39dbb52000-39dbb53000 rw-p 00000000 00:00 0
39dbc00000-39dbc08000 r-xp 00000000 08:02 2523958 /usr/lib64/libnuma.so.1
39dbc08000-39dbe08000 ---p 00008000 08:02 2523958 /usr/lib64/libnuma.so.1
39dbe08000-39dbe09000 rw-p 00008000 08:02 2523958 /usr/lib64/libnuma.so.1
2aac257de000-2aac257e0000 rw-p 00000000 00:00 0
2aac257e0000-2aac25f30000 r-xp 00000000 00:24 13262192253798162836 /home/ehermes/build/intel-2016/libmkl_intel_lp64.so
2aac25f30000-2aac26130000 ---p 00750000 00:24 13262192253798162836 /home/ehermes/build/intel-2016/libmkl_intel_lp64.so
2aac26130000-2aac26131000 r--p 00750000 00:24 13262192253798162836 /home/ehermes/build/intel-2016/libmkl_intel_lp64.so
2aac26131000-2aac26141000 rw-p 00751000 00:24 13262192253798162836 /home/ehermes/build/intel-2016/libmkl_intel_lp64.so
2aac26141000-2aac26146000 rw-p 00000000 00:00 0
2aac26146000-2aac269f8000 r-xp 00000000 00:24 9849255810717667483 /home/ehermes/build/intel-2016/libmkl_sequential.so
2aac269f8000-2aac26bf7000 ---p 008b2000 00:24 9849255810717667483 /home/ehermes/build/intel-2016/libmkl_sequential.so
2aac26bf7000-2aac26bf8000 r--p 008b1000 00:24 9849255810717667483 /home/ehermes/build/intel-2016/libmkl_sequential.so
2aac26bf8000-2aac26c08000 rw-p 008b2000 00:24 9849255810717667483 /home/ehermes/build/intel-2016/libmkl_sequential.so
2aac26c08000-2aac28315000 r-xp 00000000 00:24 12668368405913819111 /home/ehermes/build/intel-2016/libmkl_core.so
2aac28315000-2aac28514000 ---p 0170d000 00:24 12668368405913819111 /home/ehermes/build/intel-2016/libmkl_core.so
2aac28514000-2aac2851c000 r--p 0170c000 00:24 12668368405913819111 /home/ehermes/build/intel-2016/libmkl_core.so
2aac2851c000-2aac2853d000 rw-p 01714000 00:24 12668368405913819111 /home/ehermes/build/intel-2016/libmkl_core.so
2aac2853d000-2aac28590000 rw-p 00000000 00:00 0
2aac28590000-2aac28bed000 r-xp 00000000 00:24 9980521380413069202 /home/ehermes/build/intel-2016/libmkl_scalapack_lp64.so
2aac28bed000-2aac28ded000 ---p 0065d000 00:24 9980521380413069202 /home/ehermes/build/intel-2016/libmkl_scalapack_lp64.so
2aac28ded000-2aac28dee000 r--p 0065d000 00:24 9980521380413069202 /home/ehermes/build/intel-2016/libmkl_scalapack_lp64.so
2aac28dee000-2aac28df2000 rw-p 0065e000 00:24 9980521380413069202 /home/ehermes/build/intel-2016/libmkl_scalapack_lp64.so
2aac28df2000-2aac28e75000 rw-p 00000000 00:00 0
2aac28e75000-2aac28eb0000 r-xp 00000000 00:24 12955798988299861710 /home/ehermes/build/intel-2016/libmkl_blacs_intelmpi_lp64.so
2aac28eb0000-2aac290af000 ---p 0003b000 00:24 12955798988299861710 /home/ehermes/build/intel-2016/libmkl_blacs_intelmpi_lp64.so
2aac290af000-2aac290b0000 r--p 0003a000 00:24 12955798988299861710 /home/ehermes/build/intel-2016/libmkl_blacs_intelmpi_lp64.so
2aac290b0000-2aac290b1000 rw-p 0003b000 00:24 12955798988299861710 /home/ehermes/build/intel-2016/libmkl_blacs_intelmpi_lp64.so
2aac290b1000-2aac290b2000 -w-s ec263000 00:05 14823 /dev/infiniband/uverbs0
2aac290b2000-2aac290b3000 -w-s ec663000 00:05 14823 /dev/infiniband/uverbs0
2aac290d0000-2aac290d1000 rw-p 00000000 00:00 0
2aac290d1000-2aac2916c000 r-xp 00000000 00:24 12278202613982272133 /home/ehermes/local/mvapich2-2.2b/lib/libmpifort.so.12.0.5
2aac2916c000-2aac2936c000 ---p 0009b000 00:24 12278202613982272133 /home/ehermes/local/mvapich2-2.2b/lib/libmpifort.so.12.0.5
2aac2936c000-2aac2936e000 rw-p 0009b000 00:24 12278202613982272133 /home/ehermes/local/mvapich2-2.2b/lib/libmpifort.so.12.0.5
2aac2936e000-2aac29374000 rw-p 00000000 00:00 0
2aac29374000-2aac29881000 r-xp 00000000 00:24 12523311319419963579 /home/ehermes/local/mvapich2-2.2b/lib/libmpi.so.12.0.5
2aac29881000-2aac29a80000 ---p 0050d000 00:24 12523311319419963579 /home/ehermes/local/mvapich2-2.2b/lib/libmpi.so.12.0.5
2aac29a80000-2aac29cd5000 rw-p 0050c000 00:24 12523311319419963579 /home/ehermes/local/mvapich2-2.2b/lib/libmpi.so.12.0.5
2aac29cd5000-2aac29d2a000 rw-p 00000000 00:00 0
2aac29d2a000-2aac29d3b000 r-xp 00000000 08:02 2492684 /usr/lib64/libibmad.so.5.3.1
2aac29d3b000-2aac29f3b000 ---p 00011000 08:02 2492684 /usr/lib64/libibmad.so.5.3.1
2aac29f3b000-2aac29f43000 rw-p 00011000 08:02 2492684 /usr/lib64/libibmad.so.5.3.1
2aac29f43000-2aac29f44000 rw-p 00000000 00:00 0
2aac29f44000-2aac29f4b000 r-xp 00000000 08:02 2097541 /lib64/librt-2.12.so
2aac29f4b000-2aac2a14a000 ---p 00007000 08:02 2097541 /lib64/librt-2.12.so
2aac2a14a000-2aac2a14b000 r--p 00006000 08:02 2097541 /lib64/librt-2.12.so
2aac2a14b000-2aac2a14c000 rw-p 00007000 08:02 2097541 /lib64/librt-2.12.so
2aac2a14c000-2aac2a14d000 rw-p 00000000 00:00 0
2aac2a14d000-2aac2a173000 r-xp 00000000 00:24 12686030646262613964 /home/ehermes/build/intel-2016/libifport.so.5
2aac2a173000-2aac2a373000 ---p 00026000 00:24 12686030646262613964 /home/ehermes/build/intel-2016/libifport.so.5
2aac2a373000-2aac2a374000 r--p 00026000 00:24 12686030646262613964 /home/ehermes/build/intel-2016/libifport.so.5
2aac2a374000-2aac2a376000 rw-p 00027000 00:24 12686030646262613964 /home/ehermes/build/intel-2016/libifport.so.5
2aac2a376000-2aac2a37c000 rw-p 00000000 00:00 0
2aac2a37c000-2aac2a4be000 r-xp 00000000 00:24 13029538502530844850 /home/ehermes/build/intel-2016/libifcore.so.5
2aac2a4be000-2aac2a6bd000 ---p 00142000 00:24 13029538502530844850 /home/ehermes/build/intel-2016/libifcore.so.5
2aac2a6bd000-2aac2a6c0000 r--p 00141000 00:24 13029538502530844850 /home/ehermes/build/intel-2016/libifcore.so.5
2aac2a6c0000-2aac2a6c3000 rw-p 00144000 00:24 13029538502530844850 /home/ehermes/build/intel-2016/libifcore.so.5
2aac2a6c3000-2aac2a6e0000 rw-p 00000000 00:00 0
2aac2a6e0000-2aac2a981000 r-xp 00000000 00:24 12215315183336442227 /home/ehermes/build/intel-2016/libimf.so
2aac2a981000-2aac2ab80000 ---p 002a1000 00:24 12215315183336442227 /home/ehermes/build/intel-2016/libimf.so
2aac2ab80000-2aac2ab87000 r--p 002a0000 00:24 12215315183336442227 /home/ehermes/build/intel-2016/libimf.so
2aac2ab87000-2aac2abdc000 rw-p 002a7000 00:24 12215315183336442227 /home/ehermes/build/intel-2016/libimf.so
2aac2abdc000-2aac2abdd000 rw-p 00000000 00:00 0
2aac2abdd000-2aac2ac46000 r-xp 00000000 00:24 12730488443638044240 /home/ehermes/build/intel-2016/libintlc.so.5
2aac2ac46000-2aac2ae46000 ---p 00069000 00:24 12730488443638044240 /home/ehermes/build/intel-2016/libintlc.so.5
2aac2ae46000-2aac2ae48000 rw-p 00069000 00:24 12730488443638044240 /home/ehermes/build/intel-2016/libintlc.so.5
2aac2ae48000-2aac2ae49000 rw-p 00000000 00:00 0
2aac2ae49000-2aac2bacf000 r-xp 00000000 00:24 12675307685196541751 /home/ehermes/build/intel-2016/libsvml.so
2aac2bacf000-2aac2bcce000 ---p 00c86000 00:24 12675307685196541751 /home/ehermes/build/intel-2016/libsvml.so
2aac2bcce000-2aac2bd00000 r--p 00c85000 00:24 12675307685196541751 /home/ehermes/build/intel-2016/libsvml.so
2aac2bd00000-2aac2bd06000 rw-p 00cb7000 00:24 12675307685196541751 /home/ehermes/build/intel-2016/libsvml.so
2aac2bd06000-2aac2bd07000 rw-p 00000000 00:00 0
2aac2bd07000-2aac2bd1c000 r-xp 00000000 08:02 2097551 /lib64/libz.so.1.2.3
2aac2bd1c000-2aac2bf1b000 ---p 00015000 08:02 2097551 /lib64/libz.so.1.2.3
2aac2bf1b000-2aac2bf1c000 r--p 00014000 08:02 2097551 /lib64/libz.so.1.2.3
2aac2bf1c000-2aac2bf1d000 rw-p 00015000 08:02 2097551 /lib64/libz.so.1.2.3
2aac2bf1d000-2aac2bf21000 rw-p 00000000 00:00 0
2aac2bf21000-2aac2bf2d000 r-xp 00000000 08:02 2097454 /lib64/libnss_files-2.12.so
2aac2bf2d000-2aac2c12d000 ---p 0000c000 08:02 2097454 /lib64/libnss_files-2.12.so
2aac2c12d000-2aac2c12e000 r--p 0000c000 08:02 2097454 /lib64/libnss_files-2.12.so
2aac2c12e000-2aac2c12f000 rw-p 0000d000 08:02 2097454 /lib64/libnss_files-2.12.so
2aac2c12f000-2aac2c136000 r-xp 00000000 08:02 2517384 /usr/lib64/libmthca-rdmav2.so
2aac2c136000-2aac2c336000 ---p 00007000 08:02 2517384 /usr/lib64/libmthca-rdmav2.so
2aac2c336000-2aac2c337000 rw-p 00007000 08:02 2517384 /usr/lib64/libmthca-rdmav2.so
2aac2c337000-2aac2c33c000 r-xp 00000000 08:02 2518240 /usr/lib64/libnes-rdmav2.so
2aac2c33c000-2aac2c53b000 ---p 00005000 08:02 2518240 /usr/lib64/libnes-rdmav2.so
2aac2c53b000-2aac2c53c000 rw-p 00004000 08:02 2518240 /usr/lib64/libnes-rdmav2.so
2aac2c53c000-2aac2c53f000 r-xp 00000000 08:02 2516318 /usr/lib64/libipathverbs-rdmav2.so
2aac2c53f000-2aac2c73f000 ---p 00003000 08:02 2516318 /usr/lib64/libipathverbs-rdmav2.so
2aac2c73f000-2aac2c740000 rw-p 00003000 08:02 2516318 /usr/lib64/libipathverbs-rdmav2.so
2aac2c740000-2aac2c746000 r-xp 00000000 08:02 2511433 /usr/lib64/libmlx4-rdmav2.so
2aac2c746000-2aac2c945000 ---p 00006000 08:02 2511433 /usr/lib64/libmlx4-rdmav2.so
2aac2c945000-2aac2c946000 rw-p 00005000 08:02 2511433 /usr/lib64/libmlx4-rdmav2.so
2aac2c946000-2aac2c94b000 r-xp 00000000 08:02 2511981 /usr/lib64/libcxgb3-rdmav2.so
2aac2c94b000-2aac2cb4a000 ---p 00005000 08:02 2511981 /usr/lib64/libcxgb3-rdmav2.so
2aac2cb4a000-2aac2cb4b000 rw-p 00004000 08:02 2511981 /usr/lib64/libcxgb3-rdmav2.so
2aac2cb4b000-2aac2cb4d000 rw-s 00000000 00:10 345410725 /dev/shm/ib_shmem-kvs_1605017_0-aci-001.chtc.wisc.edu-21002.tmp (deleted)
2aac2cb4d000-2aac2cd4f000 rw-s 00000000 00:10 345410727 /dev/shm/ib_shmem_coll-kvs_1605017_0-aci-001.chtc.wisc.edu-21002.tmp (deleted)
2aac2cd4f000-2aac2cd50000 rw-p 00000000 00:00 0
7fffd105b000-7fffd12fa000 rw-p 00000000 00:00 0 [stack]
7fffd1367000-7fffd1368000 r-xp 00000000 00:00 0 [vdso]
ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall]
forrtl: error (76): Abort trap signal
Image PC Routine Line Source
cp2k_shell.popt 0000000002CFA0D5 Unknown Unknown Unknown
cp2k_shell.popt 0000000002CF7CF7 Unknown Unknown Unknown
cp2k_shell.popt 0000000002CB1ED4 Unknown Unknown Unknown
cp2k_shell.popt 0000000002CB1CE6 Unknown Unknown Unknown
cp2k_shell.popt 0000000002C55816 Unknown Unknown Unknown
cp2k_shell.popt 0000000002C5D0A8 Unknown Unknown Unknown
libpthread.so.0 00000039D500F7E0 Unknown Unknown Unknown
libc.so.6 00000039D4C32625 Unknown Unknown Unknown
libc.so.6 00000039D4C33E05 Unknown Unknown Unknown
libc.so.6 00000039D4C70537 Unknown Unknown Unknown
libc.so.6 00000039D4D02567 Unknown Unknown Unknown
libc.so.6 00000039D4D00450 Unknown Unknown Unknown
libc.so.6 00000039D4CFF8A9 Unknown Unknown Unknown
libc.so.6 00000039D4C74639 Unknown Unknown Unknown
libc.so.6 00000039D4C451A8 Unknown Unknown Unknown
libc.so.6 00000039D4CFF94D Unknown Unknown Unknown
libc.so.6 00000039D4CFF88F Unknown Unknown Unknown
cp2k_shell.popt 0000000002CB8E03 Unknown Unknown Unknown
cp2k_shell.popt 0000000002CBABC9 Unknown Unknown Unknown
cp2k_shell.popt 0000000002C7129D Unknown Unknown Unknown
cp2k_shell.popt 0000000002C9F239 Unknown Unknown Unknown
cp2k_shell.popt 0000000000410C8F Unknown Unknown Unknown
cp2k_shell.popt 000000000040E51E Unknown Unknown Unknown
libc.so.6 00000039D4C1ED5D Unknown Unknown Unknown
cp2k_shell.popt 000000000040E429 Unknown Unknown Unknown
===================================================================================
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= PID 1605035 RUNNING AT aci-001
= EXIT CODE: 6
= CLEANING UP REMAINING PROCESSES
= YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
===================================================================================
YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Aborted (signal 6)
This typically refers to a problem with your application.
Please see the FAQ page for debugging suggestions
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