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ImageJ macro making a movie (stack) of zooming on selected rectangle (ROI)
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//ImageJ macro making a movie (stack) of zooming on selected rectangle (ROI) | |
//Eugene Katrukha katpyxa at gmail.com | |
requires("1.48h"); | |
//check if there is rectangular selection | |
if(selectionType() ==0) | |
{ | |
sTitle=getTitle(); | |
sMovieTitle=sTitle+"_zoom_movie"; | |
setBatchMode(true); | |
//ROI parameters | |
Roi.getBounds(nX, nY, nW, nH); | |
//print(nX); | |
//print(nY); | |
//print(nW); | |
//print(nH); | |
//Dialog | |
Dialog.create("Zoom-in parameters:"); | |
Dialog.addNumber("Number of frames for zoom-in:", 10); | |
Dialog.addNumber("Add static number of frames in the end:", 10); | |
minMax=newArray("min","max"); | |
Dialog.addChoice("Zoom to min/max ROI size:", minMax); | |
sScaleChoice=newArray("same as ROI","Specified below"); | |
Dialog.addChoice("Final movie dimensions (px):", sScaleChoice); | |
Dialog.addNumber("Final movie width:", nW); | |
Dialog.addNumber("Final movie width:", nH); | |
Dialog.show(); | |
nFrames=Dialog.getNumber(); | |
nFramesLast=Dialog.getNumber(); | |
sChoice=Dialog.getChoice(); | |
sSizeChoice=Dialog.getChoice(); | |
nFinalW=Dialog.getNumber(); | |
nFinalH=Dialog.getNumber(); | |
//print(nFinalW); | |
//print(nFinalH); | |
imageH=getHeight(); | |
imageW=getWidth(); | |
rawID=getImageID(); | |
nCenterX=nX+0.5*nW; | |
//print("CenterX"); | |
//print(nCenterX); | |
nCenterY=nY+0.5*nH; | |
//print("CenterY"); | |
//print(nCenterY); | |
nScaleX=nW/imageW; | |
nScaleY=nH/imageH; | |
//adjust roi x/y ratio to image x/y ratio | |
//depending on user choice | |
if(startsWith(sChoice, "min")) | |
nScaleFin=minOf(nScaleX,nScaleY); | |
else | |
nScaleFin=maxOf(nScaleX,nScaleY); | |
nW=nScaleFin*imageW; | |
nH=nScaleFin*imageH; | |
//print("New nW"); | |
//print(nW); | |
//print("New nH"); | |
//print(nH); | |
nX=nCenterX-(nW*0.5); | |
nY=nCenterY-(nH*0.5); | |
//print(nX); | |
//print(nY); | |
//distance from (0,0) to left top corner of selsction | |
length=sqrt(nX*nX+nY*nY); | |
//print("length"); | |
//print(length); | |
if(nX==0) | |
angle=3.14/2; | |
else | |
angle=atan(nY/nX); | |
//print("angle"); | |
//print(angle); | |
//final movie size | |
if(startsWith(sSizeChoice,"same as")) | |
{ | |
nFinalW=nW; | |
nFinalH=nH; | |
} | |
else | |
{ | |
nMovieScaleX=nW/nFinalW; | |
nMovieScaleY=nH/nFinalH; | |
nMovieFinalScale = minOf(nMovieScaleX,nMovieScaleY); | |
nFinalW=nW/nMovieFinalScale; | |
nFinalH=nH/nMovieFinalScale; | |
} | |
//print(nFinalW); | |
//print(nFinalH); | |
nScaleStep=(1-nScaleFin)/nFrames; | |
bNotFirstIt=false; | |
dCount =0; | |
//for(nScale=1;nScale>=nScaleFin;nScale=nScale-nScaleStep) | |
nScale=1; | |
for(dCount =0;dCount<=nFrames;dCount++) | |
{ | |
selectImage(rawID); | |
//change viewport position/scale | |
dLen=length*dCount/nFrames; | |
//print("dlen"); | |
//print(dLen); | |
offsetX=dLen*cos(angle); | |
offsetY=dLen*sin(angle); | |
newW=imageW*nScale; | |
newH=imageH*nScale; | |
run("Specify...", "width="+toString(newW)+" height="+toString(newH)+" x="+toString(offsetX)+" y="+toString(offsetY)); | |
run("Duplicate...", "title="+sTitle+toString(nScale)); | |
unscaledID=getImageID(); | |
run("Scale...", "x=- y=- width="+toString(nFinalW)+" height="+toString(nFinalH)+" interpolation=Bicubic average create"); | |
scaledID=getImageID(); | |
selectImage(unscaledID); | |
close(); | |
selectImage(scaledID); | |
//not a first frame, let's add to existing movie stack | |
if(bNotFirstIt) | |
{ | |
sCurrTitle=sTitle+"x"+toString(nScale); | |
rename(sCurrTitle); | |
run("Concatenate...", " title=["+sMovieTitle+"] image1=["+sMovieTitle+"] image2=["+sCurrTitle+"]"); | |
} | |
//first frame, let's make accumulating stack out of it | |
else | |
{ | |
rename(sMovieTitle); | |
sMovieID=getImageID(); | |
bNotFirstIt=true; | |
} | |
nScale=nScale-nScaleStep; | |
} | |
//adding static frames part | |
nScale=nScaleFin; | |
for(nAddFrames=1;nAddFrames<=nFramesLast;nAddFrames++) | |
{ | |
selectImage(rawID); | |
offsetX=dLen*cos(angle); | |
offsetY=dLen*sin(angle); | |
newW=imageW*nScale; | |
newH=imageH*nScale; | |
run("Specify...", "width="+toString(newW)+" height="+toString(newH)+" x="+toString(offsetX)+" y="+toString(offsetY)); | |
run("Duplicate...", "title="+sTitle+toString(nScale)); | |
unscaledID=getImageID(); | |
run("Scale...", "x=- y=- width="+toString(nFinalW)+" height="+toString(nFinalH)+" interpolation=Bilinear average create"); | |
scaledID=getImageID(); | |
selectImage(unscaledID); | |
close(); | |
selectImage(scaledID); | |
sCurrTitle=sTitle+"x"+toString(nScale); | |
rename(sCurrTitle); | |
run("Concatenate...", " title=["+sMovieTitle+"] image1=["+sMovieTitle+"] image2=["+sCurrTitle+"]"); | |
} | |
setBatchMode(false); | |
} | |
//no rectangular ROI selection, error | |
else | |
{ | |
exit("Please choose rectangular selection (ROI) first."); | |
} |
Sorry, I didn't receive your comment, just saw it now. But I see you've figured everything out! :)
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Hi, Thanks for the nice script. The problem I have is an excessive acceleration in the final frames of the movie. The last couple of frames the crop jumps into the image with zoom factor exceeding 3. The zooming curve seems very nonlinear and can't figure out how to change it in the code. Would you have any suggestions?
Thanks in advance,
Andrey