Eliseo Papa elipapa

Recsys resources

Xavier Amatriaian created some of the best basic tutorials:

the biggest one was from a recsys summer school: https://www.slideshare.net/xamat/recommender-systems-machine-learning-summer-school-2014-cmu (2 hr video here: 2hr video )

He has been prolific afterwards:

the-recommender-problem-revisited

Kubernetes clusters using preemtible instances

Motivation

People experimenting with kubernetes clusters on the GKE not necessarily have money to keep a full cluster on at all time. GKE clusters can be easily resized, but this still incurs in the full instance cost when the cluster is up.

Google has added preemptible instances that are ideal for many

	{
	"basics": {
	"name": "Eliseo Papa",
	"label": "Director AI Engineering at AstraZeneca",
	"picture": "",
	"email": "[email protected]",
	"phone": "",
	"website": "",
	"summary": "I trained as a biomedical engineer and then as a clinician. Now I use my background to connect the dots between medicine and engineering. I work on building AI and data science product that can speed up the drug development process and bring medicines in the hands of patients faster.",
	"location": {

	# pip install ontoma

	from ontoma.interface import OnToma
	ot = OnToma()

	# the following will download the latest EFO OBO file from github
	# and output a tab separated files of labels <=> codes to a file
	for k,v in ot.efo_to_name.items():
	print(k,v,file=open('efolabel.txt','a'),sep="\t")

	'''
	standalone script to create a genes JSON object.
	'''

	#!/usr/bin/env python3
	import os
	import time
	import pandas as pd
	from sqlalchemy import create_engine

	apiVersion: v1
	kind: Service
	metadata:
	name: apiproxysvc-node
	labels:
	name: apiproxysvc-node
	spec:
	type: NodePort
	ports:
	- name: http

	apiVersion: extensions/v1beta1
	kind: Deployment
	metadata:
	name: apiproxy-eu
	spec:
	replicas: 1
	template:
	metadata:
	labels:
	name: apiproxy-eu

	# Sensible Bash - An attempt at saner Bash defaults
	# Repository: https://github.com/mrzool/bash-sensible

	## GENERAL OPTIONS ##
	set -o noclobber
	shopt -s checkwinsize
	PROMPT_DIRTRIM=2
	bind Space:magic-space
	shopt -s globstar 2> /dev/null
	shopt -s nocaseglob;

	#!/usr/bin/env bash
	# assuming your ES is at http://localhost:9200


	# set all existing indices to 0 replicas
	curl -XPUT "http://localhost:9200/_settings" --data '{"index":{"number_of_replicas": 0}}'

	# set marvel index to default 0 replicas
	curl -XPUT "http://localhost:9200/_template/custom_marvel" --data '{
	"template": ".marvel*",

	# Inspirations:
	# http://mutelight.org/practical-tmux
	# http://zanshin.net/2013/09/05/my-tmux-configuration/
	# http://files.floriancrouzat.net/dotfiles/.tmux.conf
	# http://stackoverflow.com/questions/9628435/tmux-status-bar-configuration
	# https://github.com/Lokaltog/powerline
	# https://github.com/remiprev/teamocil
	# http://superuser.com/questions/74492/whats-the-best-prefix-escape-sequence-for-screen-or-tmux
	# http://blog.hawkhost.com/2010/07/02/tmux-%E2%80%93-the-terminal-multiplexer-part-2/
	#