Created
April 8, 2025 18:54
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error log file from CI run PR_BUILD_3557
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| + OPTIND=1 | |
| + _opts='-f ' | |
| + getopts :j:dv option | |
| + case "${option}" in | |
| + _opts+='-v ' | |
| + getopts :j:dv option | |
| + case "${option}" in | |
| + BUILD_JOBS=8 | |
| + getopts :j:dv option | |
| + shift 3 | |
| + BUILD_JOBS=8 | |
| + WORKFLOW_BUILD=ON | |
| + ./gdas.cd/build.sh -f -v -f | |
| Start ... Tue 08 Apr 2025 02:49:50 PM EDT | |
| Building GDASApp on gaeac6 | |
| Running "module reset". Resetting modules to system default. The following $MODULEPATH directories have been removed: None | |
| Lmod is automatically replacing "intel/2023.2.0" with "intel-classic/2023.2.0". | |
| The following have been reloaded with a version change: | |
| 1) cray-mpich/8.1.28 => cray-mpich/8.1.29 | |
| Currently Loaded Modules: | |
| 1) craype-x86-genoa | |
| 2) perftools-base/23.12.0 | |
| 3) xpmem/2.9.6-1.1_20240510205610__g087dc11fc19d | |
| 4) cray-pmi/6.1.13 | |
| 5) CmrsEnv/default | |
| 6) TimeZoneEDT/default | |
| 7) DefApps/default | |
| 8) cray-dsmml/0.2.2 | |
| 9) cray-libsci/24.07.0 | |
| 10) PrgEnv-intel/8.5.0 | |
| 11) intel-classic/2023.2.0 | |
| 12) craype/2.7.30 | |
| 13) stack-intel/2023.2.0 | |
| 14) libfabric/1.20.1 | |
| 15) craype-network-ofi | |
| 16) cray-mpich/8.1.29 | |
| 17) stack-cray-mpich/8.1.29 | |
| 18) cmake/3.23.1 | |
| 19) gettext/0.20.2 | |
| 20) pcre2/10.42 | |
| 21) nghttp2/1.57.0 | |
| 22) curl/8.4.0 | |
| 23) zlib/1.2.13 | |
| 24) git/2.42.0 | |
| 25) pkg-config/0.29.2 | |
| 26) hdf5/1.14.0 | |
| 27) parallel-netcdf/1.12.2 | |
| 28) snappy/1.1.10 | |
| 29) zstd/1.5.2 | |
| 30) c-blosc/1.21.5 | |
| 31) netcdf-c/4.9.2 | |
| 32) nccmp/1.9.0.1 | |
| 33) netcdf-fortran/4.6.1 | |
| 34) antlr/2.7.7 | |
| 35) gsl/2.7.1 | |
| 36) nco/5.0.6 | |
| 37) parallelio/2.5.10 | |
| 38) wget/1.21.3 | |
| 39) libxcrypt/4.4.35 | |
| 40) sqlite/3.43.2 | |
| 41) util-linux-uuid/2.38.1 | |
| 42) python/3.10.13 | |
| 43) boost/1.83.0 | |
| 44) py-setuptools/63.4.3 | |
| 45) py-numpy/1.22.3 | |
| 46) bufr/12.0.1 | |
| 47) git-lfs/2.11.0 | |
| 48) ecbuild/3.7.2 | |
| 49) openjpeg/2.3.1 | |
| 50) eccodes/2.32.0 | |
| 51) eigen/3.4.0 | |
| 52) openblas/0.3.24 | |
| 53) eckit/1.24.5 | |
| 54) fftw/3.3.10 | |
| 55) fckit/0.11.0 | |
| 56) fiat/1.2.0 | |
| 57) ectrans/1.2.0 | |
| 58) fms/2023.04 | |
| 59) esmf/8.6.0 | |
| 60) qhull/2020.2 | |
| 61) atlas/0.35.1 | |
| 62) sp/2.5.0 | |
| 63) gsl-lite/0.37.0 | |
| 64) libjpeg/2.1.0 | |
| 65) krb5/1.20.1 | |
| 66) libtirpc/1.3.3 | |
| 67) hdf/4.2.15 | |
| 68) jedi-cmake/1.4.0 | |
| 69) libpng/1.6.37 | |
| 70) libxaw/1.10.13 | |
| 71) udunits/2.2.28 | |
| 72) ncview/2.1.9 | |
| 73) netcdf-cxx4/4.3.1 | |
| 74) json/3.10.5 | |
| 75) crtm-fix/2.4.0.1_emc | |
| 76) crtm/2.4.0.1 | |
| 77) rocoto/1.3.6 | |
| 78) bacio/2.4.1 | |
| 79) w3emc/2.10.0 | |
| 80) prod_util/2.1.1 | |
| 81) py-markupsafe/2.1.3 | |
| 82) py-jinja2/3.0.3 | |
| 83) py-cftime/1.0.3.4 | |
| 84) py-netcdf4/1.5.8 | |
| 85) py-pybind11/2.11.0 | |
| 86) py-pycodestyle/2.11.0 | |
| 87) libyaml/0.2.5 | |
| 88) py-pyyaml/6.0 | |
| 89) py-scipy/1.11.3 | |
| 90) py-packaging/23.1 | |
| 91) py-bottleneck/1.3.7 | |
| 92) py-numexpr/2.8.4 | |
| 93) py-et-xmlfile/1.0.1 | |
| 94) py-openpyxl/3.1.2 | |
| 95) py-six/1.16.0 | |
| 96) py-python-dateutil/2.8.2 | |
| 97) py-pytz/2023.3 | |
| 98) py-pyxlsb/1.0.10 | |
| 99) py-xlrd/2.0.1 | |
| 100) py-xlsxwriter/3.1.7 | |
| 101) py-xlwt/1.3.0 | |
| 102) py-pandas/1.5.3 | |
| 103) py-xarray/2023.7.0 | |
| 104) py-f90nml/1.4.3 | |
| 105) py-pip/23.1.2 | |
| 106) GDAS/gaeac6.intel | |
| Configuring ... Tue 08 Apr 2025 02:49:53 PM EDT | |
| + cmake -DMPIEXEC_EXECUTABLE=/usr/bin/srun -DMPIEXEC_NUMPROC_FLAG=-n -DBUILD_GSIBEC=ON -DCLONE_JCSDADATA=NO -DMACHINE=gaeac6 -DWORKFLOW_TESTS=ON /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/bundle | |
| -- The C compiler identification is Intel 2021.10.0.20230609 | |
| -- The CXX compiler identification is Intel 2021.10.0.20230609 | |
| -- The Fortran compiler identification is Intel 2021.10.0.20230609 | |
| -- Cray Programming Environment 2.7.30 C | |
| -- Detecting C compiler ABI info | |
| -- Detecting C compiler ABI info - done | |
| -- Check for working C compiler: /opt/cray/pe/craype/2.7.30/bin/cc - skipped | |
| -- Detecting C compile features | |
| -- Detecting C compile features - done | |
| -- Cray Programming Environment 2.7.30 CXX | |
| -- Detecting CXX compiler ABI info | |
| -- Detecting CXX compiler ABI info - done | |
| -- Check for working CXX compiler: /opt/cray/pe/craype/2.7.30/bin/CC - skipped | |
| -- Detecting CXX compile features | |
| -- Detecting CXX compile features - done | |
| -- Cray Programming Environment 2.7.30 Fortran | |
| -- Detecting Fortran compiler ABI info | |
| -- Detecting Fortran compiler ABI info - done | |
| -- Check for working Fortran compiler: /opt/cray/pe/craype/2.7.30/bin/ftn - skipped | |
| -- ecbuild 3.7.2 /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/ecbuild-3.7.2-b2k4j6z/share/ecbuild/cmake | |
| -- cmake 3.23.1 /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/cmake-3.23.1-ixiyqlk/bin/cmake | |
| -- --------------------------------------------------------- | |
| -- Found Git: /usr/bin/git (found version "2.35.3") | |
| -- Looking for sys/types.h | |
| -- Looking for sys/types.h - found | |
| -- Looking for stdint.h | |
| -- Looking for stdint.h - found | |
| -- Looking for stddef.h | |
| -- Looking for stddef.h - found | |
| -- Check size of void* | |
| -- Check size of void* - done | |
| -- Check size of off_t | |
| -- Check size of off_t - done | |
| -- --------------------------------------------------------- | |
| -- --------------------------------------------------------- | |
| -- [GDAS-bundle] (1.0.0) | |
| -- Feature TESTS enabled | |
| -- Found Python3: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/python-3.10.13-i6ygptq/bin/python3.10 (found version "3.10.13") found components: Interpreter | |
| -- Feature TESTS enabled | |
| -- --------------------------------------------------------- | |
| -- Adding bundle project jedicmake | |
| -- --------------------------------------------------------- | |
| -- Skipping bundle project eckit | |
| -- --------------------------------------------------------- | |
| -- Skipping bundle project fckit | |
| -- --------------------------------------------------------- | |
| -- Skipping bundle project atlas | |
| -- --------------------------------------------------------- | |
| -- Adding bundle project crtm | |
| -- --------------------------------------------------------- | |
| -- [crtm] (2.4.1) | |
| -- Feature TESTS enabled | |
| -- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: Fortran | |
| -- Found NetCDF: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/include (found version "4.9.2") found components: Fortran | |
| -- FindNetCDF defines targets: | |
| -- - NetCDF::NetCDF_Fortran [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/lib/libnetcdff.so] | |
| -- --------------------------------------------------------- | |
| -- [CRTM_Tests] (1.0.1) | |
| -- Feature TESTS enabled | |
| -- use LOCAL_PATH_JEDI_TESTFILES: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/bundle/fix | |
| Using existing local fix directory instead of downloading. | |
| -- Hostname: gaea68 | |
| -- Host FQDN: gaea68.head.cm.c6.ncrc.gov | |
| -- Git Branch (set CDASH_OVERRIDE_GIT_BRANCH to force): GIT_BRANCH_UNSPECIFIED | |
| -- System ID: SUSE_15.5 | |
| -- Compilers: Intel_2021.10.0.20230609 | |
| -- Build: GIT_BRANCH_UNSPECIFIED;SUSE_15.5;Intel_2021.10.0.20230609;RelWithDebInfo | |
| -- Site: gaea68.head.cm.c6.ncrc.gov | |
| -- --------------------------------------------------------- | |
| -- Adding bundle project gsibec | |
| -- Found ecbuild: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/ecbuild-3.7.2-b2k4j6z/share/ecbuild/cmake (found suitable version "3.7.2", minimum required is "3.3.2") | |
| -- --------------------------------------------------------- | |
| -- [gsibec] (1.2.1) | |
| -- Feature TESTS enabled | |
| -- Found MKL: /opt/intel/oneapi/mkl/2023.2.0/lib/intel64/libmkl_intel_lp64.so;/opt/intel/oneapi/mkl/2023.2.0/lib/intel64/libmkl_sequential.so;/opt/intel/oneapi/mkl/2023.2.0/lib/intel64/libmkl_core.so | |
| -- Found MPI_Fortran: /opt/cray/pe/craype/2.7.30/bin/ftn (found version "3.1") | |
| -- Found MPI: TRUE (found version "3.1") found components: Fortran | |
| -- Found MPI_C: /opt/cray/pe/craype/2.7.30/bin/cc (found version "3.1") | |
| -- Found MPI_CXX: /opt/cray/pe/craype/2.7.30/bin/CC (found version "3.1") | |
| -- Found MPI: TRUE (found version "3.1") | |
| -- Found NetCDF: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/include;/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/include (found version "4.9.2") found components: Fortran | |
| -- FindNetCDF defines targets: | |
| -- - NetCDF_VERSION [4.9.2] | |
| -- - NetCDF_PARALLEL [TRUE] | |
| -- - NetCDF_C_CONFIG_EXECUTABLE [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/bin/nc-config] | |
| -- - NetCDF::NetCDF_C [SHARED] [Root: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg] Lib: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/lib/libnetcdf.so | |
| -- - NetCDF_Fortran_CONFIG_EXECUTABLE [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/bin/nf-config] | |
| -- - NetCDF::NetCDF_Fortran [SHARED] [Root: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx] Lib: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/lib/libnetcdff.so | |
| -- Found sp: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/sp-2.5.0-i4p7d75/lib64/libsp_4.a (found version "2.5.0") | |
| -- --------------------------------------------------------- | |
| -- Adding bundle project gsw | |
| -- --------------------------------------------------------- | |
| -- [gsw] (3.0.8) | |
| -- Feature TESTS enabled | |
| -- --------------------------------------------------------- | |
| -- Adding bundle project bufr-query | |
| -- --------------------------------------------------------- | |
| -- [bufr_query] (2.8.0) | |
| -- Feature TESTS enabled | |
| -- Found NetCDF: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-cxx4-4.3.1-2nfkojj/include (found version "4.9.2") found components: CXX | |
| -- FindNetCDF defines targets: | |
| -- - NetCDF::NetCDF_CXX [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-cxx4-4.3.1-2nfkojj/lib/libnetcdf_c++4.so] | |
| -- Found bufr: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/bufr-12.0.1-aq4gepn/lib64/libbufr_4.so (found version "12.0.1") | |
| -- Found Python3: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/python-3.10.13-i6ygptq/bin/python3.10 (found version "3.10.13") found components: Interpreter Development Development.Module Development.Embed | |
| -- Performing Test HAS_INTEL_IPO | |
| -- Performing Test HAS_INTEL_IPO - Success | |
| -- Downloading: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/bufr-query/test/bufr_query-0.0.1.tgz | |
| -- [download 0% complete] | |
| -- Could not download test files, not building tests | |
| -- --------------------------------------------------------- | |
| -- Adding bundle project oops | |
| -- --------------------------------------------------------- | |
| -- [oops] (1.10.0) | |
| -- Feature TESTS enabled | |
| -- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: CXX Fortran | |
| -- Found MPI: TRUE (found version "3.1") found components: C CXX Fortran | |
| -- Found MPI: TRUE (found version "3.1") | |
| -- Found NetCDF: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/include;/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/include (found version "4.9.2") found components: C Fortran | |
| -- FindNetCDF defines targets: | |
| -- - NetCDF_VERSION [4.9.2] | |
| -- - NetCDF_PARALLEL [TRUE] | |
| -- - NetCDF_C_CONFIG_EXECUTABLE [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/bin/nc-config] | |
| -- - NetCDF::NetCDF_C [SHARED] [Root: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg] Lib: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/lib/libnetcdf.so | |
| -- - NetCDF_Fortran_CONFIG_EXECUTABLE [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/bin/nf-config] | |
| -- - NetCDF::NetCDF_Fortran [SHARED] [Root: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx] Lib: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/lib/libnetcdff.so | |
| -- Found Boost: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/boost-1.83.0-76l5x2z/lib/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.64.0") | |
| -- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: CXX | |
| -- Found addr2line at /usr/bin/addr2line. | |
| -- Performing Test OOPS_STACKTRACE_AVAILABLE_addr2line | |
| -- Performing Test OOPS_STACKTRACE_AVAILABLE_addr2line - Failed | |
| -- Performing Test OOPS_STACKTRACE_AVAILABLE_addr2line_nognus | |
| -- Performing Test OOPS_STACKTRACE_AVAILABLE_addr2line_nognus - Failed | |
| -- Performing Test OOPS_STACKTRACE_AVAILABLE_addr2line_gnus | |
| -- Performing Test OOPS_STACKTRACE_AVAILABLE_addr2line_gnus - Failed | |
| -- Performing Test OOPS_STACKTRACE_AVAILABLE_default | |
| -- Performing Test OOPS_STACKTRACE_AVAILABLE_default - Success | |
| -- Using this provider for stacktraces: default. | |
| CMake Warning at oops/src/CMakeLists.txt:825 (message): | |
| Atlas version is 0.35.1. Some interpolation features are not supported. | |
| Use 0.38.0 or greater to enable these features and the following tests: | |
| test_generic_atlas_global_interpolator;test_generic_atlas_global_interpolator_parallel | |
| -- --------------------------------------------------------- | |
| -- Adding bundle project vader | |
| -- --------------------------------------------------------- | |
| -- [vader] (1.7.0) | |
| -- Feature TESTS enabled | |
| -- VADER variables | |
| -- - ENABLE_VADER_DOC: OFF | |
| -- Found MPI: TRUE (found version "3.1") found components: C Fortran | |
| -- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: CXX Fortran | |
| -- Found MPI: TRUE (found version "3.1") found components: CXX Fortran | |
| -- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: CXX | |
| -- Found MPI: TRUE (found version "3.1") | |
| -- Found NetCDF: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/include;/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/include (found version "4.9.2") found components: C Fortran | |
| -- FindNetCDF defines targets: | |
| -- - NetCDF_VERSION [4.9.2] | |
| -- - NetCDF_PARALLEL [TRUE] | |
| -- - NetCDF_C_CONFIG_EXECUTABLE [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/bin/nc-config] | |
| -- - NetCDF::NetCDF_C [SHARED] [Root: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg] Lib: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/lib/libnetcdf.so | |
| -- - NetCDF_Fortran_CONFIG_EXECUTABLE [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/bin/nf-config] | |
| -- - NetCDF::NetCDF_Fortran [SHARED] [Root: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx] Lib: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/lib/libnetcdff.so | |
| -- GSW FOUND; Including Marine Recipes gsw (3.0.8) | |
| -- --------------------------------------------------------- | |
| -- Adding bundle project saber | |
| -- --------------------------------------------------------- | |
| -- [saber] (1.10.0) | |
| -- Feature TESTS enabled | |
| -- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: CXX Fortran | |
| -- Found MPI: TRUE (found version "3.1") found components: Fortran | |
| -- Found MPI: TRUE (found version "3.1") | |
| -- Found NetCDF: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/include;/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/include (found version "4.9.2") found components: C Fortran | |
| -- FindNetCDF defines targets: | |
| -- - NetCDF_VERSION [4.9.2] | |
| -- - NetCDF_PARALLEL [TRUE] | |
| -- - NetCDF_C_CONFIG_EXECUTABLE [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/bin/nc-config] | |
| -- - NetCDF::NetCDF_C [SHARED] [Root: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg] Lib: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/lib/libnetcdf.so | |
| -- - NetCDF_Fortran_CONFIG_EXECUTABLE [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/bin/nf-config] | |
| -- - NetCDF::NetCDF_Fortran [SHARED] [Root: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx] Lib: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/lib/libnetcdff.so | |
| -- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: CXX | |
| -- Found Boost: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/boost-1.83.0-76l5x2z/lib/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") | |
| -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") | |
| -- Found sp: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/sp-2.5.0-i4p7d75/lib64/libsp_4.a (found version "2.5.0") | |
| -- SABER block GSI is enabled | |
| -- SABER block FastLAM spectral layer is enabled | |
| -- SABER block SPECTRALB is enabled | |
| -- SABER instrumentation is not enabled | |
| -- Offline code coverage is not enabled | |
| -- Setup QUENCH data links | |
| -- SABER-QUENCH tests activated: | |
| -- - TIER 1 base | |
| -- - TIER 1 FastLAM-specific | |
| -- - TIER 1 FastLAM-specific - FFTW | |
| -- - TIER 1 GSI-GEOS-specific | |
| -- - TIER 1 GSI-GFS-specific | |
| -- - TIER 1 SPECTRALB-specific | |
| -- - TIER 1 VADER-specific | |
| -- Setup SABER directories and links | |
| CMake Warning at saber/test/CMakeLists.txt:151 (message): | |
| Atlas version is 0.35.1. Some interpolation features are not supported. | |
| Use 0.38.0 or greater to enable these features and the following test: | |
| dirac_interpolation_2 | |
| CMake Warning at saber/test/CMakeLists.txt:151 (message): | |
| Atlas version is 0.35.1. Some interpolation features are not supported. | |
| Use 0.38.0 or greater to enable these features and the following test: | |
| dirac_interpolation_3 | |
| -- Tests parallel configuration: MPI: 1 / OMP: 1 | |
| -- Tests parallel configuration: MPI: 2 / OMP: 1 | |
| -- Tests parallel configuration: MPI: 4 / OMP: 1 | |
| -- SABER documentation is not enabled | |
| -- --------------------------------------------------------- | |
| -- Adding bundle project ioda | |
| -- --------------------------------------------------------- | |
| -- [ioda] (2.9.0) | |
| -- Feature TESTS enabled | |
| -- Found OpenMP_C: -qopenmp (found version "5.0") | |
| -- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: C CXX Fortran | |
| -- Found HDF5: hdf5-shared (found version "1.14.0") found components: C HL | |
| -- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: CXX | |
| -- Found udunits: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/udunits-2.2.28-huyn2lv/lib/libudunits2.so (Required is at least version "2.2.0") | |
| -- Found Boost: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/boost-1.83.0-76l5x2z/lib/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.64.0") | |
| -- Found bufr: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/bufr-12.0.1-aq4gepn/lib64/libbufr_4.so (found version "12.0.1") | |
| -- IODA required NetCDF components: C;Fortran;CXX | |
| -- Found NetCDF: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/include;/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/include;/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-cxx4-4.3.1-2nfkojj/include (found version "4.9.2") found components: C Fortran CXX | |
| -- FindNetCDF defines targets: | |
| -- - NetCDF_VERSION [4.9.2] | |
| -- - NetCDF_PARALLEL [TRUE] | |
| -- - NetCDF_C_CONFIG_EXECUTABLE [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/bin/nc-config] | |
| -- - NetCDF::NetCDF_C [SHARED] [Root: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg] Lib: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/lib/libnetcdf.so | |
| -- - NetCDF_Fortran_CONFIG_EXECUTABLE [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/bin/nf-config] | |
| -- - NetCDF::NetCDF_Fortran [SHARED] [Root: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx] Lib: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/lib/libnetcdff.so | |
| -- - NetCDF_CXX_CONFIG_EXECUTABLE [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-cxx4-4.3.1-2nfkojj/bin/ncxx4-config] | |
| -- - NetCDF::NetCDF_CXX [SHARED] [Root: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-cxx4-4.3.1-2nfkojj] Lib: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-cxx4-4.3.1-2nfkojj/lib/libnetcdf_c++4.so | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_abiclr.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_ahiclr.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_aircraft.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_aircraft_write.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_airs.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_altimeter.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_amsr.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_amsub.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_ascatsm.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_aod.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_aod_write.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_aod_write_testdatasets.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_atms.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_atms_write.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_atovs.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_atovs_write.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_cris.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_crisfsr.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_fciasr.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_fciclr.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_geocloud.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_gmihigh.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_gmihigh_write.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_gmilow.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_gnssro.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_gnssro_profile_100.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_gnssro_profile_333.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_groundgps.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_hirasfsr.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_hloswind.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_iasi.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_iasi_write.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_mtgirs.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_mwri.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_mwsfy3.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_oceancolour.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_oceansound.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_oceansound_truncate_profiles.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_radar_doppler_wind.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_radar_reflectivity.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_satsst.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_sattcwv.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_satwind.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_scatwind.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_scatwindchosen_write.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_seaice.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_seviriasr.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_seviriclr.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_sonde.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_sonde_history.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_sonde_mixed.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_sonde_time_displacement.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_sonde_truncate_profiles.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_sonde_write.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_sonde_write_mixed.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_ssmis.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_stationsnow.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_surface.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_surfacecloud.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_surfacesst.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//odb_default_name_map.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//odb_aircraft_name_map.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//odb_amsr_name_map.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//odb_gnssro_name_map.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//odb_gnssro_profile_name_map.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//odb_oceansound_name_map.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//odb_radiance_name_map.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//odb_sonde_name_map.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//odb_surface_name_map.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//odb_surfacesst_name_map.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ioda/share/test/testinput//validation//ObsSpace.yaml | |
| -- Use test data from ioda-data repository | |
| -- --------------------------------------------------------- | |
| -- Adding bundle project ufo | |
| -- --------------------------------------------------------- | |
| -- [ufo] (1.10.0) | |
| -- Feature TESTS enabled | |
| -- Found MPI: TRUE (found version "3.1") found components: C CXX Fortran | |
| -- Found Boost: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/boost-1.83.0-76l5x2z/lib/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") | |
| -- Found MPI: TRUE (found version "3.1") | |
| -- Found NetCDF: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/include;/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/include;/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-cxx4-4.3.1-2nfkojj/include (found version "4.9.2") found components: C Fortran | |
| -- FindNetCDF defines targets: | |
| -- - NetCDF_VERSION [4.9.2] | |
| -- - NetCDF_PARALLEL [TRUE] | |
| -- - NetCDF_C_CONFIG_EXECUTABLE [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/bin/nc-config] | |
| -- - NetCDF::NetCDF_C [SHARED] [Root: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg] Lib: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/lib/libnetcdf.so | |
| -- - NetCDF_Fortran_CONFIG_EXECUTABLE [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/bin/nf-config] | |
| -- - NetCDF::NetCDF_Fortran [SHARED] [Root: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx] Lib: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/lib/libnetcdff.so | |
| -- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: CXX Fortran | |
| -- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: CXX | |
| -- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
| -- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: C CXX Fortran | |
| -- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: Fortran | |
| -- CRTM FOUND; Including CRTM Observation Operator (2.4.1) | |
| -- RTTOV NOT FOUND; Excluding RTTOV Radiance Observation Operator | |
| -- GSW FOUND; Including Marine Observation Operators (3.0.8) | |
| -- ROPP NOT FOUND: Excluding GNSSRO Bending angle ROPP Operators | |
| -- GEOS-AERO NOT FOUND: Excluding AOD operator from GEOS | |
| -- OASIM NOT FOUND: Excluding Ocean Atmosphere Spectral Irradiance Model | |
| -- Skipping download of test data from https://bin.ssec.wisc.edu/pub/s4/CRTM/file/crtm_coefficients_2.4.1_skylab_4.0.tar.gz since it already exists | |
| -- Use test data from ufo-data repository | |
| -- Running ufo tests for tiers up to and including tier 1 | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ufo/resources/auxillary | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ufo/resources/auxillary/IASI_EmisEigenVec.dat | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ufo/resources/auxillary/IASI_EmisEigenVec_v2.dat | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ufo/resources/bmatrix | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ufo/resources/bmatrix/gnssro | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ufo/resources/bmatrix/gnssro/gnssro_bmatrix.txt | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ufo/resources/bmatrix/rttov | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ufo/resources/bmatrix/rttov/atovs_bmatrix_70_test.dat | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ufo/resources/bmatrix/rttov/amsr_bmatrix_70_test.dat | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ufo/resources/bmatrix/rttov/iasi_bmatrix_70_test.dat | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ufo/resources/bmatrix/rttov/atms_bmatrix_70_test.dat | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ufo/resources/bmatrix/rttov/ssmis_bmatrix_70_test.dat | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ufo/resources/bmatrix/rttov/gmihigh_bmatrix_70_test.dat | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ufo/resources/namemap | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ufo/resources/namemap/bayesian_name_map.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ufo/resources/namemap/test_name_map.yaml | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ufo/resources/rmatrix | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ufo/resources/rmatrix/gnssro | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ufo/resources/rmatrix/gnssro/gnssro_ba_rmatrix_latitude.nc4 | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ufo/resources/rmatrix/gnssro/gnssro_ba_rmatrix_avtemp.nl | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ufo/resources/rmatrix/gnssro/gnssro_ba_rmatrix.nl | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ufo/resources/rmatrix/gnssro/gnssro_ba_rmatrix_latitude.nl | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ufo/resources/rmatrix/rttov | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ufo/resources/rmatrix/rttov/gmihigh_gpm_rmatrix_test.nc4 | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ufo/resources/rmatrix/rttov/ssmis_dmspf17_rmatrix_test.nc4 | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ufo/resources/rmatrix/rttov/amsr_gcomw1_rmatrix_test.nc4 | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ufo/resources/rmatrix/rttov/atovs_metopb_rmatrix_test.nc4 | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ufo/resources/rmatrix/rttov/atms_noaa_20_rmatrix_test.nc4 | |
| -- Installing: /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/ufo/resources/rmatrix/rttov/iasi_metopb_rmatrix_test.nc4 | |
| WARNWE ARE USING fv3-interface.cmake | |
| -- --------------------------------------------------------- | |
| -- Adding bundle project fv3 | |
| -- Setting build type to 'RelWithDebInfo'. | |
| -- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
| -- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") | |
| -- Found NetCDF: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/include (found version "4.9.2") found components: C Fortran | |
| -- FindNetCDF defines targets: | |
| -- - NetCDF::NetCDF_C [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/lib/libnetcdf.so] | |
| -- - NetCDF::NetCDF_Fortran [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/lib/libnetcdff.so] | |
| -- Found MPI: TRUE (found version "3.1") found components: Fortran | |
| -- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: Fortran | |
| -- FindNetCDF defines targets: | |
| -- - NetCDF::NetCDF_C [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/lib/libnetcdf.so] | |
| -- - NetCDF::NetCDF_Fortran [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/lib/libnetcdff.so] | |
| -- Found FMS: "/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/fms-2023.04-onsceze" (Version: "2023.4.0") | |
| -- FMS targets: | |
| -- - FMS::fms_r8 [Lib: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/fms-2023.04-onsceze/lib/libfms_r8.a] | |
| -- --------------------------------------------------------- | |
| -- Adding bundle project femps | |
| CMake Warning (dev) at femps/CMakeLists.txt:7 (find_package): | |
| Policy CMP0074 is not set: find_package uses <PackageName>_ROOT variables. | |
| Run "cmake --help-policy CMP0074" for policy details. Use the cmake_policy | |
| command to set the policy and suppress this warning. | |
| Environment variable ecbuild_ROOT is set to: | |
| /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/ecbuild-3.7.2-b2k4j6z | |
| For compatibility, CMake is ignoring the variable. | |
| This warning is for project developers. Use -Wno-dev to suppress it. | |
| -- Found ecbuild: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/ecbuild-3.7.2-b2k4j6z/share/ecbuild/cmake (found suitable version "3.7.2", minimum required is "3.6") | |
| -- --------------------------------------------------------- | |
| -- [femps] (1.3.0) | |
| -- Feature TESTS enabled | |
| -- Feature TESTS enabled | |
| -- Found MPI: TRUE (found version "3.1") | |
| -- Found NetCDF: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/include;/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/include;/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-cxx4-4.3.1-2nfkojj/include (found version "4.9.2") found components: Fortran | |
| -- FindNetCDF defines targets: | |
| -- - NetCDF_VERSION [4.9.2] | |
| -- - NetCDF_PARALLEL [TRUE] | |
| -- - NetCDF_C_CONFIG_EXECUTABLE [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/bin/nc-config] | |
| -- - NetCDF::NetCDF_C [SHARED] [Root: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg] Lib: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/lib/libnetcdf.so | |
| -- - NetCDF_Fortran_CONFIG_EXECUTABLE [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/bin/nf-config] | |
| -- - NetCDF::NetCDF_Fortran [SHARED] [Root: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx] Lib: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/lib/libnetcdff.so | |
| -- --------------------------------------------------------- | |
| -- Adding bundle project fv3-jedi-lm | |
| CMake Warning (dev) at fv3-jedi-lm/CMakeLists.txt:18 (find_package): | |
| Policy CMP0074 is not set: find_package uses <PackageName>_ROOT variables. | |
| Run "cmake --help-policy CMP0074" for policy details. Use the cmake_policy | |
| command to set the policy and suppress this warning. | |
| Environment variable ecbuild_ROOT is set to: | |
| /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/ecbuild-3.7.2-b2k4j6z | |
| For compatibility, CMake is ignoring the variable. | |
| This warning is for project developers. Use -Wno-dev to suppress it. | |
| -- --------------------------------------------------------- | |
| -- [fv3jedilm] (1.5.0) | |
| -- Feature TESTS enabled | |
| -- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: C Fortran | |
| -- Found MPI: TRUE (found version "3.1") found components: Fortran | |
| -- fv3jedilm FOUND MPI | |
| -- Found package MPI required for feature MPI | |
| -- Feature MPI enabled | |
| -- Found MPI: TRUE (found version "3.1") | |
| -- Found NetCDF: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/include;/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/include;/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-cxx4-4.3.1-2nfkojj/include (found version "4.9.2") found components: Fortran | |
| -- FindNetCDF defines targets: | |
| -- - NetCDF_VERSION [4.9.2] | |
| -- - NetCDF_PARALLEL [TRUE] | |
| -- - NetCDF_C_CONFIG_EXECUTABLE [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/bin/nc-config] | |
| -- - NetCDF::NetCDF_C [SHARED] [Root: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg] Lib: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/lib/libnetcdf.so | |
| -- - NetCDF_Fortran_CONFIG_EXECUTABLE [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/bin/nf-config] | |
| -- - NetCDF::NetCDF_Fortran [SHARED] [Root: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx] Lib: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/lib/libnetcdff.so | |
| -- Found MPI: TRUE (found version "3.1") found components: Fortran | |
| -- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: Fortran | |
| -- Found MPI: TRUE (found version "3.1") | |
| -- Found FMS: "/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/fms-2023.04-onsceze" (Version: "2023.4.0") | |
| -- FMS targets: | |
| -- - FMS::fms_r4 [Lib: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/fms-2023.04-onsceze/lib/libfms_r4.a] | |
| -- - FMS::fms_r8 [Lib: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/fms-2023.04-onsceze/lib/libfms_r8.a] | |
| -- --------------------------------------------------------- | |
| -- Adding bundle project fv3-jedi | |
| CMake Warning (dev) at fv3-jedi/CMakeLists.txt:20 (find_package): | |
| Policy CMP0074 is not set: find_package uses <PackageName>_ROOT variables. | |
| Run "cmake --help-policy CMP0074" for policy details. Use the cmake_policy | |
| command to set the policy and suppress this warning. | |
| Environment variable ecbuild_ROOT is set to: | |
| /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/ecbuild-3.7.2-b2k4j6z | |
| For compatibility, CMake is ignoring the variable. | |
| This warning is for project developers. Use -Wno-dev to suppress it. | |
| -- --------------------------------------------------------- | |
| -- [fv3jedi] (1.9.0) | |
| -- Feature TESTS enabled | |
| -- Found NetCDF: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/include;/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/include;/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-cxx4-4.3.1-2nfkojj/include (found version "4.9.2") found components: C Fortran | |
| -- FindNetCDF defines targets: | |
| -- - NetCDF_VERSION [4.9.2] | |
| -- - NetCDF_PARALLEL [TRUE] | |
| -- - NetCDF_C_CONFIG_EXECUTABLE [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/bin/nc-config] | |
| -- - NetCDF::NetCDF_C [SHARED] [Root: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg] Lib: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/lib/libnetcdf.so | |
| -- - NetCDF_Fortran_CONFIG_EXECUTABLE [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/bin/nf-config] | |
| -- - NetCDF::NetCDF_Fortran [SHARED] [Root: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx] Lib: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/lib/libnetcdff.so | |
| -- Found OpenMP: TRUE (found version "5.0") found components: CXX | |
| -- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
| -- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: CXX Fortran | |
| -- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: Fortran | |
| -- Looking for Fortran sgemm | |
| -- Looking for Fortran sgemm - found | |
| -- Found BLAS: implicitly linked | |
| -- Looking for pthread.h | |
| -- Looking for pthread.h - found | |
| -- Performing Test CMAKE_HAVE_LIBC_PTHREAD | |
| -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success | |
| -- Found Threads: TRUE | |
| -- Looking for Fortran cheev | |
| -- Looking for Fortran cheev - found | |
| -- Found LAPACK: implicitly linked | |
| -- FFTW targets: | |
| -- FFTW::fftw3 (double precision) [/opt/intel/oneapi/mkl/2023.2.0/lib/intel64/libmkl_intel_lp64.so;/opt/intel/oneapi/mkl/2023.2.0/lib/intel64/libmkl_sequential.so;/opt/intel/oneapi/mkl/2023.2.0/lib/intel64/libmkl_core.so] | |
| -- Found FFTW: /opt/intel/oneapi/mkl/2023.2.0/include/fftw found components: double | |
| -- Found sp: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/sp-2.5.0-i4p7d75/lib64/libsp_4.a (found version "2.5.0") | |
| -- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
| -- FV3-SABER block GSI is enabled | |
| -- Found sp: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/sp-2.5.0-i4p7d75/lib64/libsp_4.a (found version "2.5.0") | |
| -- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
| -- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: C CXX Fortran | |
| -- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: Fortran | |
| -- Found MPI: TRUE (found version "3.1") found components: CXX Fortran | |
| -- Found MPI: TRUE (found version "3.1") found components: Fortran | |
| -- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
| -- Found MPI: TRUE (found version "3.1") | |
| -- Found FMS: "/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/fms-2023.04-onsceze" (Version: "2023.4.0") | |
| -- FMS targets: | |
| -- - FMS::fms_r4 [Lib: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/fms-2023.04-onsceze/lib/libfms_r4.a] | |
| -- - FMS::fms_r8 [Lib: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/fms-2023.04-onsceze/lib/libfms_r8.a] | |
| -- Use crtm test data provided by ufo in /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/bundle/test-data-release/crtm/2.4.1_skylab_4.0/ | |
| -- Use test data from fv3-jedi-data repository | |
| -- Running fv3jedi tests for tiers up to and including tier 1 | |
| -- --------------------------------------------------------- | |
| -- Adding bundle project soca | |
| -- Found ecbuild: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/ecbuild-3.7.2-b2k4j6z/share/ecbuild/cmake (found suitable version "3.7.2", minimum required is "3.3.2") | |
| -- --------------------------------------------------------- | |
| -- [soca] (1.8.0) | |
| -- Feature TESTS enabled | |
| -- Found NetCDF: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/include (found version "4.9.2") found components: Fortran C | |
| -- FindNetCDF defines targets: | |
| -- - NetCDF::NetCDF_Fortran [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/lib/libnetcdff.so] | |
| -- - NetCDF::NetCDF_C [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/lib/libnetcdf.so] | |
| -- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: CXX | |
| -- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
| -- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: CXX Fortran | |
| -- Found MPI: TRUE (found version "3.1") found components: CXX Fortran | |
| -- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: Fortran | |
| -- FFTW targets: | |
| -- FFTW::fftw3 (double precision) [/opt/intel/oneapi/mkl/2023.2.0/lib/intel64/libmkl_intel_lp64.so;/opt/intel/oneapi/mkl/2023.2.0/lib/intel64/libmkl_sequential.so;/opt/intel/oneapi/mkl/2023.2.0/lib/intel64/libmkl_core.so] | |
| -- Found sp: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/sp-2.5.0-i4p7d75/lib64/libsp_4.a (found version "2.5.0") | |
| -- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
| -- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: C CXX Fortran | |
| -- Found MPI: TRUE (found version "3.1") | |
| -- Found NetCDF: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/include;/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/include;/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-cxx4-4.3.1-2nfkojj/include (found version "4.9.2") | |
| -- FindNetCDF defines targets: | |
| -- - NetCDF_VERSION [4.9.2] | |
| -- - NetCDF_PARALLEL [TRUE] | |
| -- - NetCDF_C_CONFIG_EXECUTABLE [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/bin/nc-config] | |
| -- - NetCDF::NetCDF_C [SHARED] [Root: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg] Lib: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/lib/libnetcdf.so | |
| -- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: Fortran | |
| -- Found MPI: TRUE (found version "3.1") found components: Fortran | |
| -- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
| -- Found MPI: TRUE (found version "3.1") | |
| -- Found NetCDF: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-c-4.9.2-ltruqgg/include;/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/include;/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-cxx4-4.3.1-2nfkojj/include (found version "4.9.2") found components: C Fortran | |
| -- FindNetCDF defines targets: | |
| -- - NetCDF_VERSION [4.9.2] | |
| -- - NetCDF_PARALLEL [TRUE] | |
| -- - NetCDF_Fortran_CONFIG_EXECUTABLE [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/bin/nf-config] | |
| -- - NetCDF::NetCDF_Fortran [SHARED] [Root: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx] Lib: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/lib/libnetcdff.so | |
| -- Found FMS: "/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/fms-2023.04-onsceze" (Version: "2023.4.0") | |
| -- FMS targets: | |
| -- - FMS::fms_r4 [Lib: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/fms-2023.04-onsceze/lib/libfms_r4.a] | |
| -- Found OpenMP_C: -qopenmp (found version "5.0") | |
| -- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: C Fortran | |
| Building MOM6 standalone executable | |
| -- --------------------------------------------------------- | |
| -- Adding bundle project gdas-utils | |
| -- Found NetCDF: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-cxx4-4.3.1-2nfkojj/include (found version "4.9.2") found components: CXX | |
| -- FindNetCDF defines targets: | |
| -- - NetCDF::NetCDF_CXX [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-cxx4-4.3.1-2nfkojj/lib/libnetcdf_c++4.so] | |
| -- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
| -- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: CXX Fortran | |
| -- Found MPI: TRUE (found version "3.1") found components: CXX Fortran | |
| -- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: CXX | |
| -- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
| Error: staging directory for RTOFS test files not found | |
| -- --------------------------------------------------------- | |
| -- Adding bundle project da-utils | |
| -- Found NetCDF: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-cxx4-4.3.1-2nfkojj/include (found version "4.9.2") found components: CXX Fortran | |
| -- FindNetCDF defines targets: | |
| -- - NetCDF::NetCDF_CXX [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-cxx4-4.3.1-2nfkojj/lib/libnetcdf_c++4.so] | |
| -- - NetCDF::NetCDF_Fortran [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/lib/libnetcdff.so] | |
| -- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: CXX Fortran | |
| -- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: CXX | |
| -- Found MPI: TRUE (found version "3.1") found components: Fortran | |
| -- Building tools that link to OOPS/JEDI | |
| -- Found ESMF: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/esmf-8.6.0-edn2jda/lib/libesmf.a (found suitable version "8.6.0", minimum required is "8.0.0") | |
| -- --------------------------------------------------------- | |
| -- Adding bundle project iodaconv | |
| -- Found ecbuild: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/ecbuild-3.7.2-b2k4j6z/share/ecbuild/cmake (found suitable version "3.7.2", minimum required is "3") | |
| -- --------------------------------------------------------- | |
| -- [iodaconv] (0.0.1) | |
| -- Feature TESTS enabled | |
| -- Found: eccodes | |
| -- Found MPI: TRUE (found version "3.1") | |
| -- Found OpenMP_C: -qopenmp (found version "5.0") | |
| -- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
| -- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: C CXX Fortran | |
| -- Found bufr: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/bufr-12.0.1-aq4gepn/lib64/libbufr_4.so (found version "12.0.1") | |
| -- Found: bufr | |
| -- Found: NetCDF::NetCDF_Fortran | |
| -- Enabled Component: gnssro | |
| -- Found: nceplib bufr | |
| -- Found: eckit | |
| -- Found: oops | |
| -- Found: ioda | |
| -- Found: bufr | |
| -- Enabled Component: bufr | |
| -- Found: eckit | |
| -- Found: bufr | |
| -- Found: pybind11 | |
| -- Found: gsl-lite | |
| -- Enabled Component: bufr python | |
| -- Enabled Component: gsi bias converter | |
| -- Enabled Component: obserror converter | |
| -- Found: bufr | |
| -- Found: NetCDF::NetCDF_Fortran | |
| -- Enabled Component: pbfortran | |
| -- --------------------------------------------------------- | |
| -- Adding bundle project land-imsproc | |
| -- Found ecbuild: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/ecbuild-3.7.2-b2k4j6z/share/ecbuild/cmake (found suitable version "3.7.2", minimum required is "3.3.2") | |
| -- --------------------------------------------------------- | |
| -- [imsproc] (2022.10) | |
| -- Feature TESTS enabled | |
| -- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
| -- Found OpenMP: TRUE (found version "5.0") found components: C Fortran | |
| -- Found MPI: TRUE (found version "3.1") found components: C Fortran | |
| -- Found NetCDF: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/include (found version "4.9.2") found components: Fortran | |
| -- FindNetCDF defines targets: | |
| -- - NetCDF::NetCDF_Fortran [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/lib/libnetcdff.so] | |
| -- --------------------------------------------------------- | |
| -- Adding bundle project land-jediincr | |
| -- --------------------------------------------------------- | |
| -- [jediincr] (2022.10) | |
| -- Feature TESTS enabled | |
| -- FindNetCDF defines targets: | |
| -- - NetCDF::NetCDF_Fortran [/autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/netcdf-fortran-4.6.1-o5cmyfx/lib/libnetcdff.so] | |
| -- --------------------------------------------------------- | |
| -- Adding bundle project gdas | |
| -- --------------------------------------------------------- | |
| -- [GDASApp] (1.0.0) | |
| -- Feature TESTS enabled | |
| -- Found Python3: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/python-3.10.13-i6ygptq/bin/python3.10 (found version "3.10.13") found components: Interpreter | |
| Traceback (most recent call last): | |
| File "/gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/bundle/gdas/test/gw-ci/get_cycles.py", line 38, in <module> | |
| main() | |
| File "/gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/bundle/gdas/test/gw-ci/get_cycles.py", line 32, in main | |
| idate_value = read_idate_from_yaml(args.yaml_file) | |
| File "/gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/bundle/gdas/test/gw-ci/get_cycles.py", line 8, in read_idate_from_yaml | |
| with open(file_path, 'r') as file: | |
| FileNotFoundError: [Errno 2] No such file or directory: '/gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/bundle/../../../ci/cases/pr/C96C48_hybatmDA.yaml' | |
| CMake Error at gdas/test/gw-ci/CMakeLists.txt:224 (string): | |
| string sub-command REPLACE requires at least four arguments. | |
| Call Stack (most recent call first): | |
| gdas/test/gw-ci/CMakeLists.txt:283 (add_cycling_tests) | |
| Traceback (most recent call last): | |
| File "/gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/bundle/gdas/test/gw-ci/get_cycles.py", line 38, in <module> | |
| main() | |
| File "/gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/bundle/gdas/test/gw-ci/get_cycles.py", line 32, in main | |
| idate_value = read_idate_from_yaml(args.yaml_file) | |
| File "/gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/bundle/gdas/test/gw-ci/get_cycles.py", line 8, in read_idate_from_yaml | |
| with open(file_path, 'r') as file: | |
| FileNotFoundError: [Errno 2] No such file or directory: '/gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/bundle/../../../ci/cases/pr/C96C48_ufs_hybatmDA.yaml' | |
| CMake Error at gdas/test/gw-ci/CMakeLists.txt:224 (string): | |
| string sub-command REPLACE requires at least four arguments. | |
| Call Stack (most recent call first): | |
| gdas/test/gw-ci/CMakeLists.txt:317 (add_cycling_tests) | |
| Traceback (most recent call last): | |
| File "/gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/bundle/gdas/test/gw-ci/get_cycles.py", line 38, in <module> | |
| main() | |
| File "/gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/bundle/gdas/test/gw-ci/get_cycles.py", line 32, in main | |
| idate_value = read_idate_from_yaml(args.yaml_file) | |
| File "/gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/bundle/gdas/test/gw-ci/get_cycles.py", line 8, in read_idate_from_yaml | |
| with open(file_path, 'r') as file: | |
| FileNotFoundError: [Errno 2] No such file or directory: '/gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/bundle/../../../ci/cases/pr/C96C48_hybatmaerosnowDA.yaml' | |
| CMake Error at gdas/test/gw-ci/CMakeLists.txt:224 (string): | |
| string sub-command REPLACE requires at least four arguments. | |
| Call Stack (most recent call first): | |
| gdas/test/gw-ci/CMakeLists.txt:352 (add_cycling_tests) | |
| Traceback (most recent call last): | |
| File "/gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/bundle/gdas/test/gw-ci/get_cycles.py", line 38, in <module> | |
| main() | |
| File "/gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/bundle/gdas/test/gw-ci/get_cycles.py", line 32, in main | |
| idate_value = read_idate_from_yaml(args.yaml_file) | |
| File "/gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/bundle/gdas/test/gw-ci/get_cycles.py", line 8, in read_idate_from_yaml | |
| with open(file_path, 'r') as file: | |
| FileNotFoundError: [Errno 2] No such file or directory: '/gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/bundle/../../../ci/cases/pr/C48mx500_3DVarAOWCDA.yaml' | |
| CMake Error at gdas/test/gw-ci/CMakeLists.txt:224 (string): | |
| string sub-command REPLACE requires at least four arguments. | |
| Call Stack (most recent call first): | |
| gdas/test/gw-ci/CMakeLists.txt:377 (add_cycling_tests) | |
| Traceback (most recent call last): | |
| File "/gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/bundle/gdas/test/gw-ci/get_cycles.py", line 38, in <module> | |
| main() | |
| File "/gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/bundle/gdas/test/gw-ci/get_cycles.py", line 32, in main | |
| idate_value = read_idate_from_yaml(args.yaml_file) | |
| File "/gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/bundle/gdas/test/gw-ci/get_cycles.py", line 8, in read_idate_from_yaml | |
| with open(file_path, 'r') as file: | |
| FileNotFoundError: [Errno 2] No such file or directory: '/gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/bundle/../../../ci/cases/pr/C48mx500_hybAOWCDA.yaml' | |
| CMake Error at gdas/test/gw-ci/CMakeLists.txt:224 (string): | |
| string sub-command REPLACE requires at least four arguments. | |
| Call Stack (most recent call first): | |
| gdas/test/gw-ci/CMakeLists.txt:401 (add_cycling_tests) | |
| failed to create symbolic link '/gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/gdas/test/marine/testinput' because existing path cannot be removed: Is a directory | |
| failed to create symbolic link '/gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/gdas/test/marine/testinput' because existing path cannot be removed: Is a directory | |
| failed to create symbolic link '/gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/gdas/test/marine/testinput' because existing path cannot be removed: Is a directory | |
| failed to create symbolic link '/gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/gdas/test/marine/testinput' because existing path cannot be removed: Is a directory | |
| -- Found Python: /autofs/ncrc-svm1_proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/intel/2023.2.0/python-3.10.13-i6ygptq/bin/python3.10 (found version "3.10.13") found components: Interpreter | |
| CMake Warning at gdas/test/marine/CMakeLists.txt:95 (message): | |
| BUFR test file directory not found -- bufr to ioda tests not generated. | |
| -- --------------------------------------------------------- | |
| -- Bundle GDAS-bundle | |
| -- --------------------------------------------------------- | |
| -- --------------------------------------------------------- | |
| -- Build summary | |
| -- --------------------------------------------------------- | |
| -- system : [gaea68] [Linux-5.14.21-150500.55.65_13.0.73-cray_shasta_c] [linux.64] | |
| -- processor : [x86_64] | |
| -- endiness : Little Endian -- IEEE [] | |
| -- build type : [RelWithDebInfo] | |
| -- timestamp : [20250408145004] | |
| -- install prefix : [/usr/local] | |
| -- bin dir : [/usr/local/bin] | |
| -- lib dir : [/usr/local/lib64] | |
| -- include dir : [/usr/local/include] | |
| -- data dir : [/usr/local/share/GDAS-bundle] | |
| -- cmake dir : [/usr/local/lib64/cmake/GDAS-bundle] | |
| -- --------------------------------------------------------- | |
| -- C -- Intel 2021.10.0.20230609 | |
| -- compiler : /opt/cray/pe/craype/2.7.30/bin/cc | |
| -- flags : -gcc-name=/usr/bin/gcc-12 -O2 -g -DNDEBUG | |
| -- link flags : | |
| -- CXX -- Intel 2021.10.0.20230609 | |
| -- compiler : /opt/cray/pe/craype/2.7.30/bin/CC | |
| -- flags : -gxx-name=/usr/bin/g++-12 -gcc-name=/usr/bin/gcc-12 -static-libstdc++ -O2 -g -DNDEBUG | |
| -- link flags : | |
| -- Fortran -- Intel 2021.10.0.20230609 | |
| -- compiler : /opt/cray/pe/craype/2.7.30/bin/ftn | |
| -- flags : -gcc-name=/usr/bin/gcc-12 -O2 -g -DNDEBUG -heap-arrays 32 | |
| -- link flags : | |
| -- linker : /usr/bin/ld | |
| -- ar : /usr/bin/ar | |
| -- ranlib : /usr/bin/ranlib | |
| -- link flags | |
| -- executable [ -Wl,--disable-new-dtags ] | |
| -- shared lib [ -Wl,--disable-new-dtags ] | |
| -- static lib [ -Wl,--disable-new-dtags ] | |
| -- install rpath : $ORIGIN/../lib64 /gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/fv3 | |
| -- common definitions: | |
| -- --------------------------------------------------------- | |
| -- Feature summary | |
| -- --------------------------------------------------------- | |
| -- The following features have been enabled: | |
| * TESTS, GDAS-bundle: Enable the unit tests, GDAS-bundle: Enable the unit tests, crtm: Enable the unit tests, CRTM_Tests: Enable the unit tests, gsibec: Enable the unit tests, gsw: Enable the unit tests, bufr_query: Enable the unit tests, oops: Enable the unit tests, vader: Enable the unit tests, saber: Enable the unit tests, ioda: Enable the unit tests, ufo: Enable the unit tests, femps: Enable the unit tests, femps: Enable the unit tests, fv3jedilm: Enable the unit tests, fv3jedi: Enable the unit tests, soca: Enable the unit tests, iodaconv: Enable the unit tests, imsproc: Enable the unit tests, jediincr: Enable the unit tests, GDASApp: Enable the unit tests | |
| * Python, Build Python bindings using pybind11 | |
| * MPI, fv3jedilm: Support for MPI distributed parallelism | |
| -- The following OPTIONAL packages have been found: | |
| * bufr_query | |
| * pybind11 | |
| * PkgConfig | |
| * Git | |
| * Perl | |
| -- The following REQUIRED packages have been found: | |
| * femps (required version >= 1.3.0) | |
| * FMS (required version >= 2023.04) | |
| * fv3jedilm (required version >= 1.5.0) | |
| * gsw | |
| * vader (required version >= 1.7.0) | |
| * BLAS | |
| * Threads | |
| * FFTW | |
| * gsibec | |
| * sp | |
| * saber (required version >= 1.10.0) | |
| * crtm | |
| * ufo (required version >= 1.10.0) | |
| * fms (required version >= 2023.3.0) | |
| * ESMF (required version >= 8.0.0) | |
| * jedicmake | |
| * MKL | |
| * boost_headers (required version == 1.83.0) | |
| * Boost | |
| * eckit | |
| * fckit | |
| * Eigen3 | |
| * atlas | |
| * nlohmann_json | |
| * oops | |
| * eccodes | |
| * gsl-lite | |
| * HDF5 | |
| * udunits (required version >= 2.2.0) | |
| * ioda | |
| * bufr (required version >= 12.0.1) | |
| * OpenMP | |
| * MPI, fv3jedilm: Support for MPI distributed parallelism | |
| * NetCDF | |
| * ecbuild (required version >= 3.5) | |
| * Python3 | |
| * fv3jedi | |
| * soca | |
| * Python, Build Python bindings using pybind11 | |
| -- The following OPTIONAL packages have not been found: | |
| * nlohmann_json_schema_validator | |
| * odc (required version >= 1.4.6) | |
| * rttov (required version >= 12.1.0) | |
| * geos-aero | |
| * oasim | |
| * ropp-ufo | |
| * cartopy | |
| -- Configuring incomplete, errors occurred! | |
| See also "/gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/CMakeFiles/CMakeOutput.log". | |
| See also "/gpfs/f6/drsa-precip3/world-shared/global/CI/3557/global-workflow/sorc/gdas.cd/build/CMakeFiles/CMakeError.log". |
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