..linux-setup.sh

# Usage:
#    curl https://gist.githubusercontent.com/entrity/5462105/raw/..linux-setup.sh | bash
# Installs
# - .gitconfig
# - .ssh/config
# - .bash_aliases

src=https://gist.githubusercontent.com/entrity/5462105/raw

wget -O ~/.gitconfig $src/.gitconfig
wget -O ~/.bash_aliases $src/.bash_aliases

cd $HOME
mkdir -p .ssh
chmod 700 .ssh
which curl && curl $src/ssh-config >> ~/.ssh/config

ADDENDUM_COMMENT='# Addednum from Entrity sys_setup'
if ! grep -q ".bash_aliases" ~/.bashrc; then
  curl $src/.bashrc_addendum >> ~/.bashrc
fi

.bash_aliases

alias ga='git add -u; git status'
alias gs='git status'
alias ga.='git add -u .; git status .'
alias gs.='git status .'
alias gl='git log'
alias gb='git branch'
alias gd='git diff'
alias gdc='git diff --cached'
alias tp="trash-put"
alias ml="matlab -nosplash -nodesktop"
alias subla="subl ~/.bash_aliases"
alias virt=". activate gen"
alias ipy="python -c 'import IPython; IPython.terminal.ipapp.launch_new_instance()'"
alias ipy3="source activate gen; python3 -c 'import IPython; IPython.terminal.ipapp.launch_new_instance()'"
alias ipy2="source activate p2; python2 -c 'import IPython; IPython.terminal.ipapp.launch_new_instance()'"
alias chx='chmod +x'
alias yt="youtube-dl -f '244+bestaudio/135+bestaudio/243+bestaudio/134+bestaudio' --yes-playlist"
alias yt="youtube-dl -o \"%(playlist_index)s-%(title)s.%(ext)s\" <playlist_link> --yes-playlist"
alias myapt="fakeroot dpkg --force-not-root --instdir=$HOME/tools/apt --admindir=$HOME/tools/apt/db"
alias bracketed_paste_off="printf \"\e[?2004l\"" # Turn off shell putting 0~ and 1~ around your pastes

function rmorig ()
{
	find . -type f -name \*_ORIGIN_\* -exec rm {} \;
	find . -type f -name \*_REMOTE_\* -exec rm {} \;
	find . -type f -name \*_LOCAL_\* -exec rm {} \;
	find . -type f -name \*_BACKUP_\* -exec rm {} \;
	find . -type f -name \*.orig -exec rm {} \;
}
export rmorig

function playpcm()
{
	fin=$1
	chan="${2:-2}"
	srate="${3:-48000}"
	ffplay -ar $srate -ac $chan -f f64le $fin
}
export playpcm

function rot13 ()
{
	if [[ -z $1 ]]; then
		read -r arg
	else
		arg=$1
	fi
	echo "$arg" | tr '[A-Za-z]' '[N-ZA-Mn-za-m]'
}
alias lastlog='ls /home/markham/proj/weakly-vrd/log -t | head -n1 | sed "s/\n//"'

.bashrc_addendum

[[ -e ~/.bash_aliases ]] && source ~/.bash_aliases

.gitconfig

[user]
  name = Markham
  email = [email protected]
[credential]
  helper = cache
[alias]
  s = status
  l = log
  h = log --pretty=format:"%C(yellow)%h%Cred%d\\ %Creset%s%Cgreen\\ [%cn]" --decorate --graph
  hl = log --pretty=format:"%C(yellow)%cD%Cgreen\\ [%cn]\\ %Creset%s\\ %Cred%d" --decorate --graph
  m = merge --no-ff
  b = branch
  co = checkout
  a = add -u
  ce = commit -e
  ca = commit -ae
  cm = commit -m
  cam = commit -am
  p = push origin
[push]
  default = current
[merge]
  conflictstyle = diff3
  tool = kdiff3
[color]
  ui = true

install-tensorflow.sh

sudo apt install -y python3-pip python3-dev python3-tk
pip3 install virtualenv ipython matplotlib
ENV=python-env-tensorflow
virtualenv --system-site-packages -p python3 $ENV

>>$HOME/.bash_aliases cat <<HEREDOC
alias virt="source $ENV/bin/activate"
alias ipy="virt; python3 -c 'import IPython; IPython.terminal.ipapp.launch_new_instance()'"
HEREDOC
. $HOME/.bash_aliases

virt && \
pip3 install tensorflow-gpu

# CUDA
# http://docs.nvidia.com/cuda/cuda-installation-guide-linux/#axzz4VZnqTJ2A
verify_cuda_compat ()
{
	sudo update-pciids
	lspci | grep -i nvidia
	# Then check http://developer.nvidia.com/cuda-gpus for compatibility
}

download_cuda ()
{
	echo see http://developer.nvidia.com/cuda-downloads for url for your distro\'s cuda
	printf 'please enter url for cuda: '
	read -r url
	wget "$url"
	md5sum $(basename "$url")
}

install_cuda ()
{
	sudo apt-get install linux-headers-$(uname -r)
	sudo dpkg -i $(basename "$url")
	sudo apt-get update
	sudo apt-get install cuda
	>>/etc/profile echo 'export PATH=/usr/local/cuda-8.0/bin${PATH:+:${PATH}}'
	>>/etc/profile echo 'export LD_LIBRARY_PATH=/usr/local/cuda-8.0/lib64${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}'
}

verify_cuda_installation ()
{
	cuda-install-samples-8.0.sh &&\
	cd NVIDIA_CUDA-8.0_Samples && \
	make &&\
	# make may fail to find library libnvcuvid
	# 1. try to find the lib: sudo find /usr -name libnvcuvid\*
	# 2. use the path: LIBRARY_PATH=<dir>:$LIBRARY_PATH make
	# See https://devtalk.nvidia.com/default/topic/769578/cuda-6-5-cannot-find-lnvcuvid/
	bin/x86_64/linux/release/deviceQuery
}

# When running my python script, I got error:
# ImportError: libcudnn.so.5: cannot open shared object file: No such file or directory
#
# So I went back to https://developer.nvidia.com/rdp/cudnn-download and downloaded cuDNN v5.1 for CUDA 8.0
# and installed that.

intel.sh

# Usage:
# echo export http_proxy=http://proxy-chain.intel.com:911 >> /etc/environment
# echo export https_proxy=https://proxy-chain.intel.com:911 >> /etc/environment
# source /etc/environment
# curl https://gist.githubusercontent.com/entrity/5462105/raw/..sys_setup.sh | bash
#
#
# Files to drop in
# - .gitconfig
# - .bash_aliases
#
# Files to update
# - .bashrc
src=https://gist.githubusercontent.com/entrity/5462105/raw

prompt 'Intel server?' 1
ISINTEL=$choice

[[ $ISINTEL ]] && prompt 'Install pip?'
[[ $choice ]] && sudo apt-get install -y python-pip

[[ $ISINTEL ]] && prompt 'Install trash-cli?'
[[ $choice ]] && sudo easy_install trash-cli

[[ $ISINTEL ]] && prompt 'Install mysql client?'
[[ $choice ]] && sudo apt-get install -y mysql

[[ $ISINTEL ]] && prompt 'Install ruby?'
[[ $choice ]] && sudo apt-get install -y ruby

[[ $ISINTEL ]] && prompt 'Install nodejs?'
if [[ $choice ]]; then
  sudo curl -sL https://deb.nodesource.com/setup_4.x | bash
  sudo apt-get -qq install -y nodejs
  npm config set proxy $http_proxy
  npm config set https_proxy $https_proxy
fi

if [[ $ISINTEL ]]; then
  # Install CA Certs
  sudo "apt-get install unzip &&\
  cd /usr/local/share/ca-certificates &&\
  wget http://certificates.intel.com/repository/certificates/Intel%20Root%20Certificate%20Chain%20Base64.zip &&\
  wget http://certificates.intel.com/repository/certificates/IntelSHA2RootChain-Base64.zip &&\
  unzip '*.zip' &&\
  rm *.zip &&\
  rm *.pem &&\
  update-ca-certificates" || ( echo fail && exit 3 )
  # Install Docker
  # Usage: sudo docker login icapp-dockreg.icloud.intel.com
  apt-get update
  sudo apt-get install apt-transport-https ca-certificates
  sudo -E apt-key adv --keyserver hkp://p80.pool.sks-keyservers.net:80 --recv-keys 58118E89F3A912897C070ADBF76221572C52609D
  echo 'deb https://apt.dockerproject.org/repo ubuntu-trusty main' | sudo tee -a /etc/apt/sources.list.d/docker.list >/dev/null
  sudo apt-get update
  sudo apt-get purge lxc-docker
  sudo apt-get install linux-image-extra-$(uname -r)
  sudo apt-get install docker-engine
  echo "export proxy=\"$http_proxy\"" | sudo tee -a /etc/default/docker >/dev/null
  sudo service docker restart
  # Install Cloudfoundry
  # Usage: cf login -a https://api.apps1-fm-int.icloud.intel.com/
  #   cf orgs # will list available ORGs
  #   cf spaces # will list available SPACEs
  wget -O cloudfoundry-cli.deb https://cli.run.pivotal.io/stable?release=debian64&source=github
  sudo dpkg -i cloudfoundry-cli.deb
  cf target -O markhama # ORG
  cf target -S Development # SPACE : may need to set up a SPACE at cloudservices.intelcloud.intel.com
fi

source ~/.bashrc

python-deep-learning.sh

#!/bin/bash
sudo pip install matplotlib
sudo apt install -y libfreetype6-dev
sudo pip install IPython
sudo pip install scipy
sudo pip install sklearn

server-setup.sh

#!/bin/bash

touch .ssh/authorized_keys
chmod 600 .ssh/authorized_keys

shared.sh

# This file is meant to be sourced, not run as an executable

export src=https://gist.githubusercontent.com/entrity/5462105/raw

prompt()
{
  printf "$1"
  if [[ $2 ]]; then
    printf ' [Y/n] ' 
    read -r choice </dev/tty
    [[ ! $choice = n ]] && [[ ! $choice = N ]]
  else
    printf ' [y/N] '
    read -r choice </dev/tty
    [[ $choice = y ]] || [[ $choice = Y ]]
  fi
  choice=$?
}
export -f prompt

ssh-config

Host vision
	HostName vision6.idav.ucdavis.edu

Host vision2
	HostName vision2.idav.ucdavis.edu

Host pc
	HostName pc13.cs.ucdavis.edu
	CheckHostIP no
	StrictHostKeyChecking no

Host dod
	HostName markhamanderson.com

Host tipsy
	HostName tipsyology.com

Host godot
	HostName godot.cs.ucdavis.edu

Host hpc
	HostName hpc1.engr.ucdavis.edu
	IdentityFile ~/.ssh/hpc_rsa

Host mycloud
	HostName 10.0.0.16
	User mar

Host sorgenfrei
	HostName 169.237.108.223
	Port 4022

VirtualBox : mount shared directory.sh

#!/bin/bash

# Assuming the that folder share is named 'tmp' (in the vbox shared folders config?)
# and the destination on the guest is tmp:

mkdir -p $HOME/tmp
sudo mount -t vboxsf -o uid=$(whoami) tmp ~/tmp

windows_intel.sh

# FIRST DOWNLOAD AND SET UP CMDER WHICH COMES (OPTIONALLY) WITH GIT BASH

# .bashrc addendum
echo http_proxy=http://proxy-chain.intel.com:911 >> ~/.bashrc
echo https_proxy=https://proxy-chain.intel.com:911 >> ~/.bashrc

# Install nodejs
wget -O ~/Downloads/node.msi https://nodejs.org/dist/v4.4.7/node-v4.4.7-x64.msi
~/node.msi
npm config set proxy $http_proxy
npm config set https_proxy $https_proxy
npm config registry http://registry.npmjs.org/ # It seems that even with the proxy configured, I can't connect to the SSL (default) registry