Linking R to Oracle JDK/JRE

gistfile1.txt

# As an administrative user, run the following on command line (paths need to be adjusted to local jre version):
root> export JAVA_HOME='/Library/Java/JavaVirtualMachines/jdk1.7.0_91.jdk/Contents/Home/jre'
root> export LD_LIBRARY_PATH='/Library/Java/JavaVirtualMachines/jdk1.7.0_91.jdk/Contents/Home/jre/lib/server'
root> export PATH=$PATH:$JAVA_HOME/bin
root> R CMD javareconf JAVA_CPPFLAGS=-I/System/Library/Frameworks/JavaVM.framework/Headers

# On the R command line (launched as admin), run the following
R> install.packages('rJava','http://www.rforge.net/')