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eric-czech
/ dask_svd_compressed_benchmark.ipynb
Created
September 11, 2020 16:47
Dask SVD compressed array shape benchmark
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eric-czech
/ dask_svd_benchmark.ipynb
Created
September 9, 2020 17:09
Dask svd transpose and sign flip benchmark
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eric-czech
/ pca_comparison.ipynb
Last active
August 27, 2020 17:54
PCA Comparison (Scikit-allel vs Scikit-allel vs Dask-ML)
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eric-czech
/ sgkit_is_segregating.ipynb
Last active
August 10, 2020 21:26
Segregating variants w/ Xarray
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eric-czech
/ dividx.py
Created
July 23, 2020 19:23
Function to partition n elements into g groups (like np.array_split without materialization)
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| def dividx(n, groups): | |
| """Create index for groups that partition an array | |
| The number of elements placed into a group will | |
| either equal `n//groups` or `n//groups + 1`, depending | |
| on how many of the latter are necessary to make | |
| the partitioning complete. | |
| Parameters | |
| ---------- |
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eric-czech
/ dask_genetic_data_simulation.ipynb
Last active
May 23, 2020 16:18
Genetic data simulations with dask
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eric-czech
/ genotype_likelihood_representation.ipynb
Created
April 20, 2020 12:25
GL Representation
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