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library(dplyr) | |
library(tidyr) | |
library(magrittr) | |
library(bayesplot) | |
plot_areas <- function(d, n, mu, s, cutoff, left = TRUE, h, v) { | |
if (left) { | |
Pr <- apply(d, 2, function (x) mean(x < cutoff)) | |
} else { | |
Pr <- apply(d, 2, function (x) mean(x >= cutoff)) | |
} | |
key <- colnames(d) | |
d <- gather(d) | |
d %<>% | |
group_by(key) %>% | |
mutate(x = density(value, bw = "SJ", n = n)$x, | |
y = density(value, bw = "SJ", n = n)$y, | |
x_pos = mean(x), | |
y_pos = mean(y)) | |
if (left) { | |
d <- mutate(d, area = x < cutoff) | |
} else { | |
d <- mutate(d, area = x >= cutoff) | |
} | |
label <- paste("Pr =", as.character(round(Pr, 2))) | |
dat_text <- data.frame(label = label, key = key) | |
p <- ggplot(d, aes(x, y)) + | |
geom_ribbon(aes(ymin = 0, ymax = y, fill = area), alpha = 1/2) + | |
facet_wrap(~key) + | |
geom_vline(xintercept = cutoff, size = 0.2, linetype = 2) + | |
ylab("") + | |
geom_text( | |
data = dat_text, | |
mapping = aes(x = -Inf, y = -Inf, label = label), | |
hjust = h, | |
vjust = v | |
) + | |
bayesplot::theme_default() + | |
theme(legend.position="none", | |
axis.title.y = element_blank(), | |
axis.text.y = element_blank(), | |
axis.ticks.y = element_blank(), | |
axis.line.y = element_blank()) | |
return(p) | |
} | |
n <- 1e3 | |
mu <- c(0.69, 0.76, 0.81, 0.78) | |
s <- c(0.1, 0.12, 0.15, 0.17) | |
cutoff <- 0.6 | |
d <- tibble(A = rnorm(n, mu[1], s[1]), | |
B = rnorm(n, mu[2], s[2]), | |
C = rnorm(n, mu[3], s[3]), | |
D = rnorm(n, mu[4], s[4])) | |
p <- plot_areas(d, n, mu, s, cutoff, TRUE, -0.5, -3) + xlab("Hazard Ratio") | |
p |
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