Setup DADA2 R environment with Anaconda

README.md

Anaconda Setup on Exacloud

1. SSH into Exacloud

2. Visit Conda website https://docs.conda.io/en/latest/miniconda.html

3. Copy link to installer

   # Go to home directory and download install script
   cd
   wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh

4. Install conda, a general purpose but Python centered package manager.

   bash Miniconda3-latest-Linux-x86_64.sh

5. Follow prompts on installer screen; accept defaults for now

6. Exit Exacloud and SSH into it again

7. Test to see if installation worked with typing conda list

8. If successful, go into KarstensLab to find an environment.yml file

   cd /home/exacloud/lustre1/teamMicrobiome/KarstensLab
   ls

9. Create a conda environment with this environment.yml file; installation may take a while

   conda env create -f environment.yml

10. Check if installation is successful by listing environments

    conda env list

11. Activate environment

    conda activate dada2