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Emir Turkes eturkes

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@vancluever
vancluever / gnome-tracker-disable.md
Last active February 18, 2025 04:04
GNOME Tracker Disable

Disabling GNOME Tracker and Other Info

GNOME's tracker is a CPU and privacy hog. There's a pretty good case as to why it's neither useful nor necessary here: http://lduros.net/posts/tracker-sucks-thanks-tracker/

After discovering it chowing 2 cores, I decided to go about disabling it.

Directories

@rmflight
rmflight / code_counting.md
Last active July 24, 2020 00:26
stuff I always need to find

If you want to know how many lines of code are in an Rmd file:

rmarkdown::render("file.Rmd", output_format = "md_document")

cat file.md | grep -c '^ \{4\}'

And then how many lines of code in .R files:

@BenderIsMyGod
BenderIsMyGod / .cshrc
Last active March 29, 2025 11:57
Tcsh / csh fancy shell prompt with date, color and more
# $FreeBSD: releng/10.3/etc/root/dot.cshrc 243893 2012-12-05 13:56:39Z eadler $
#
# .cshrc - csh resource script, read at beginning of execution by each shell
#
# see also csh(1), environ(7).
# more examples available at /usr/share/examples/csh/
#
alias h history 25
alias j jobs -l
@klmr
klmr / s4-vs-s3.md
Last active June 16, 2019 17:59
A simple side-by-side comparison of S4 with S3 in R

S4

setClass('Seq', representation(data = 'character', id = 'character'),
         validity = function (object) is_dna(object@data))

print_fasta = function (object) {
@gene1wood
gene1wood / analyze_pypi_package_names.py
Last active May 3, 2024 19:34
Analysis of PyPi package names and the use of dashes underscores upper and lower case
try:
import xmlrpclib
except ImportError:
import xmlrpc.client as xmlrpclib
client = xmlrpclib.ServerProxy('https://pypi.python.org/pypi')
packages = client.list_packages()
total = len(packages)
dashes = len([x for x in packages if '-' in x])
@oganm
oganm / singleCellQuickie.R
Created October 24, 2016 23:57
library(XLConnect)
library(magrittr)
library(dplyr)
# mouse rna seq data download Zeisel et al. download------
dir.create('data-raw/ZeiselMouse', showWarnings=FALSE)
download.file(url= 'http://storage.googleapis.com/linnarsson-lab-www-blobs/blobs/cortex/expression_mRNA_17-Aug-2014.txt',
destfile='data-raw/ZeiselMouse/mouseRNASeq_Zeisel 2015.txt')
download.file(url = 'http://science.sciencemag.org/highwire/filestream/628248/field_highwire_adjunct_files/1/aaa1934_TableS1.xlsx',
destfile = 'data-raw/ZeiselMouse/markerGenes.xlsx')
@Spindel
Spindel / model.py
Last active March 22, 2023 01:19
Interview question model.
import uuid
import random
from afase.models.meta import Base
from sqlalchemy import (
Column,
Text,
Date,
ForeignKey,
@max-mapper
max-mapper / data.csv
Last active January 9, 2019 16:31
eLife dataset DOIs (specifically linked as 'external datasets' from the paper, most of which live in external repositories)
We can make this file beautiful and searchable if this error is corrected: It looks like row 10 should actually have 4 columns, instead of 3 in line 9.
doi,id,type,url
10.7554/eLife.00007,dataro1,generated-dataset,http://dx.doi.org/10.5061/dryad.gs45f
10.7554/eLife.00048,dataro1,generated-dataset,http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE40298
10.7554/eLife.00049,dataro1,generated-dataset,http://www.ncbi.nlm.nih.gov/genbank/
10.7554/eLife.00065,dataro1,generated-dataset,http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE39313http://www.ncbi.nlm.nih.gov/geo/
10.7554/eLife.00170,dataro1,generated-dataset,http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE41937http://eisenlab.org/data/TAF7Lhttp://www.ncbi.nlm.nih.gov/geo/
10.7554/eLife.00170,dataro2,generated-dataset,http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE21365http://www.ncbi.nlm.nih.gov/geo/
10.7554/eLife.00170,dataro3,generated-dataset,http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27450http://www.ncbi.nlm.nih.gov/geo/
10.7554/eLife.00170,dataro4,generated-dataset,http://trace.ddbj.nig.ac.jp/DRASearch/study?acc=DRP000383http://www.ddbj.nig.ac.jp/
10.7554/eLife.00184,dataro1,
@supposedly
supposedly / arg-parsers.md
Last active December 16, 2021 09:53
This list is probably out of date. It hasn't been updated since September 2019.

Big ol' list of third-party Python 3 argparse alternatives

Bold+italics means the lib is probably worth checking out above the rest. joffrey is my own.

argparse wrappers

@johnhw
johnhw / umap_sparse.py
Last active February 26, 2025 10:50
1 million prime UMAP layout
### JHW 2018
import numpy as np
import umap
# This code from the excellent module at:
# https://stackoverflow.com/questions/4643647/fast-prime-factorization-module
import random