Created
August 11, 2011 10:05
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A simple animated demonstration of Power Analysis
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| mha <- 1 # mean under the alternative | |
| es <- 2 # observed effect (deviation from mean under H0) | |
| x <- seq(-6, 6, length=1000) | |
| dh0 <- dnorm(x, 0, 1) | |
| show.it <- function(es, mha, verbose=FALSE) { | |
| dh1 <- dnorm(x, mha, 1) | |
| plot.new() | |
| plot.window(xlim=range(x), ylim=c(0,.6)) | |
| axis(1) | |
| ## show the two bell-shaped curves | |
| draw.curve <- function(x, y, col) { | |
| polygon(c(rev(x), x), c(rep(0, 1000), y), col=paste(col, "50", sep=""), | |
| border=NA) | |
| lines(x, y, lwd=1, col=col) | |
| } | |
| draw.curve(x, dh0, col="#2A4480") | |
| draw.curve(x, dh1, col="#FFE973") | |
| mtext(expression(mu[H0]), 1, -1.25, at=0) | |
| mtext(expression(mu[H1]), 1, -1.25, at=mha) | |
| ## show the observed effect | |
| abline(v=es, lty=2) | |
| ## highlight Type I and 1 - Type II error | |
| polygon(c(rev(x[x>=es]), x[x>=es]), c(rep(0, sum(x>=es)), dh0[x>=es]), | |
| col="#BF303075", border=NA) | |
| lines(x[x>=es], dh0[x>=es], col="#BF3030", lwd=1) | |
| polygon(c(rev(x[x>=es & dh0<dh1]), x[x>=es & dh0<dh1]), | |
| c(rev(dh0[x>=es & dh0<dh1]), dh1[x>=es & dh0<dh1]), | |
| col="#1D737375", border=NA) | |
| lines(x[x>=es & dh0<dh1], dh1[x>=es & dh0<dh1], col="#1D7373", lwd=1) | |
| alpha <- pnorm(es, 0, 1, lower.tail=FALSE) | |
| beta <- pnorm(es, mha, 1) | |
| labs.h0 <- "Type I Error (Alpha) " | |
| labs.h1a <- "Type II Error (Beta) " | |
| labs.h1b <- "1 - Type II Error (Power) " | |
| if (verbose) { | |
| labs.h0 <- paste(labs.h0, round(alpha*100, 1), "%", sep="") | |
| labs.h1a <- paste(labs.h1a, round(beta*100, 1), "%", sep="") | |
| labs.h1b <- paste(labs.h1b, round((1-beta)*100, 1), "%", sep="") | |
| } | |
| legend("topleft", c(labs.h0, labs.h1a, labs.h1b), pch=15, | |
| col=c("#BF3030", "#FFE973", "#1D7373"), bty="n") | |
| } | |
| animate.it <- function() { | |
| require(aplpack) | |
| update.display <- function(...) { | |
| s.es <- slider(no=1) | |
| s.mha <- slider(no=2) | |
| s.verbose <- slider(obj.name="show.numbers") | |
| show.it(s.es, s.mha, s.verbose) | |
| } | |
| slider(update.display, sl.names=c("Effect", "Mean Under HA"), | |
| sl.mins=c(0.5, 0.5), sl.maxs=c(4, 3), | |
| sl.deltas=c(.05,.1), sl.defaults=c(es, mha), | |
| but.functions=list( | |
| function(...) {slider(obj.name="show.numbers", obj.value=TRUE); | |
| update.display()}, | |
| function(...) {slider(obj.name="show.numbers", obj.value=FALSE); | |
| update.display()}), | |
| but.names=c("On", "Off")) | |
| slider(obj.name="show.numbers", obj.value=FALSE) | |
| } | |
| show.it(es, mha, verbose=FALSE) | |
| animate.it() |
Author
Hi
I tried running the same code but I am getting error when I try to implement animate.it(). I get the following error
Error in tkconfigure(sc, variable = slider1) :
could not find function "tkconfigure"
Could you help me with this?
Author
Error in tkconfigure(sc, variable = slider1) :
could not find function "tkconfigure"
You likely need to install the tcltk2 package in R, e.g. install.packages("tcltk2", dependencies = TRUE).
Best,
Thanks :)
This worked ::)
Best
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A little interactive demo of power analysis. This is largely inspired from the Java applet found here: http://www.intuitor.com/statistics/T1T2Errors.html. Here is a sample screenshot.