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March 22, 2011 23:12
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How to include ggplot graphics within Sweave
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% compile with | |
% R CMD Sweave sweave_ggplot.Rnw | |
% pdflatex sweave_ggplot.tex | |
\documentclass[t,ucs,12pt,xcolor=dvipsnames]{beamer} | |
\usepackage{fancyvrb} | |
\title{A sample Sweave demo} | |
\author{Author name} | |
\date{} | |
% customize color code chunk (Scode = inline) | |
\definecolor{Sinput}{rgb}{0.75,0.19,0.19} | |
\definecolor{Soutput}{rgb}{0,0,0} | |
\definecolor{Scode}{rgb}{0.75,0.19,0.19} | |
\begin{document} | |
% default size for the sweaved graphics | |
\setkeys{Gin}{width=0.6\textwidth} | |
% default font size and color for R code | |
\DefineVerbatimEnvironment{Sinput}{Verbatim} | |
{formatcom = {\color{Sinput}},fontsize=\scriptsize} | |
\DefineVerbatimEnvironment{Soutput}{Verbatim} | |
{formatcom = {\color{Soutput}},fontsize=\footnotesize} | |
\DefineVerbatimEnvironment{Scode}{Verbatim} | |
{formatcom = {\color{Scode}},fontsize=\small} | |
\frame{\titlepage} | |
<<echo=false>>= | |
set.seed(101) | |
library(ggplot2) | |
library(ellipse) | |
@ | |
\begin{frame}[fragile] | |
<<>>= | |
n <- 1000 | |
x <- rnorm(n, mean=2) | |
y <- 1.5 + 0.4*x + rnorm(n) | |
df <- data.frame(x=x, y=y) | |
# take a bootstrap sample | |
df <- df[sample(nrow(df), nrow(df), rep=TRUE),] | |
xc <- with(df, xyTable(x, y)) | |
df2 <- cbind.data.frame(x=xc$x, y=xc$y, n=xc$number) | |
df.ell <- as.data.frame(with(df, ellipse(cor(x, y), | |
scale=c(sd(x),sd(y)), | |
centre=c(mean(x),mean(y))))) | |
p1 <- ggplot(data=df2, aes(x=x, y=y)) + | |
geom_point(aes(size=n), alpha=.6) + | |
stat_smooth(data=df, method="loess", se=FALSE, color="green") + | |
stat_smooth(data=df, method="lm") + | |
geom_path(data=df.ell, colour="green", size=1.2) | |
@ | |
\end{frame} | |
\begin{frame} | |
\begin{figure} | |
\centering | |
<<fig=true,echo=false>>= | |
print(p1) | |
@ | |
\caption{Here goes the caption.} | |
\label{fig:p1} | |
\end{figure} | |
\end{frame} | |
\end{document} |
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