Created
January 22, 2019 13:40
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PMF and likelihood of binomial RV
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library(tidyverse) | |
library(patchwork) | |
strip_lblr <- function(s) as_labeller(function(x) paste0(s, " = ", x)) | |
p_brks <- seq(0, 1, .25) %>% set_names() %>% set_names(MASS::fractions(.)) | |
x <- 4 | |
df <- crossing(k = 0:x, p = seq(0, 1, .05)) %>% | |
mutate(PX_k = dbinom(k, x, p)) | |
ml_estimates <- tibble(k = 0:x, p = k / x, L = dbinom(k, 4, p)) | |
pmf_binom <- | |
ggplot(filter(df, p %in% c(0, .25, .5, .75, 1))) + | |
geom_col(aes(x = k, y = PX_k), fill = "sienna2", color = "white") + | |
facet_wrap(~p, labeller = strip_lblr("p"), nrow = 1) + | |
scale_x_continuous(breaks = unique(df$k)) + | |
scale_y_continuous(expand = c(0, 0)) + | |
labs(subtitle = "Probability mass function: P(X = k | p)", y = NULL) | |
lik_binom <- | |
ggplot(df) + | |
geom_line(aes(x = p, y = PX_k), color = "sienna2") + | |
geom_point(aes(x = p, y = L), ml_estimates, color = "blue", size = rel(0.5)) + | |
facet_wrap(~k, labeller = strip_lblr("k"), nrow = 1) + | |
scale_x_continuous(breaks = p_brks) + | |
scale_y_continuous(expand = expand_scale(c(0.02, 0.04))) + | |
theme(plot.caption = element_text(size = 8)) + | |
labs(subtitle = "Likelihood function: L(p | X = k)", y = NULL, | |
caption = expression( | |
"Blue dots indicate " ~ L(hat(p) ~ "|" ~ X == k) ~ | |
", where " ~ hat(p) == frac(k,n) ~ " is the maximum likelihood estimator.")) | |
pmf_binom / lik_binom * | |
theme_classic(base_size = 11, base_line_size = 0.1) * | |
theme(strip.background = element_blank()) + | |
plot_annotation("X ~ Binomial(4, p)") | |
Author
expersso
commented
Jan 22, 2019
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