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Install NiftyReg
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| mkdir -p $HOME/git | |
| cd $HOME/git | |
| git clone https://github.com/KCL-BMEIS/niftyreg.git --depth 1 | |
| cd niftyreg | |
| mkdir build install | |
| cd build | |
| # This gave me trouble on a DGX | |
| ## If cmake is run just once, make may not work. Might be related to https://stackoverflow.com/q/47684410/3956024 | |
| #cmake -DCMAKE_INSTALL_PREFIX:STRING=../install -DUSE_CUDA:BOOL=ON -DCMAKE_C_COMPILER:STRING=/usr/bin/gcc-6 .. | |
| #cmake -DCMAKE_INSTALL_PREFIX:STRING=../install -DUSE_CUDA:BOOL=ON -DCMAKE_C_COMPILER:STRING=/usr/bin/gcc-6 .. | |
| cmake -DCMAKE_INSTALL_PREFIX:STRING=../install .. | |
| make -j$(nproc) | |
| make install | |
| # Add this to .bashrc or equivalent: | |
| PATH="$HOME/git/niftyreg/install/bin:$PATH" | |
| LD_LIBRARY_PATH="$HOME/git/niftyreg/install/lib/:$LD_LIBRARY_PATH" |
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