For all *.logs files in the directory: extracts scores and compound names from dock6 docking logs and puts it to the simple csv file, with the name of the input file.

process_dock6_logs.sh

for f in *.logs; 
do echo $f;
echo "compound,score" > `basename $f .logs`.csv;
cat $f | egrep "Molecule:|Grid_Score" |  tr -s " " | sed -e ':a;N;$!ba;s/\n Grid_Score: / /g' -e 's/Molecule: //g' | \
    tr " " "," >> `basename $f .logs`.csv;
done