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Last active September 22, 2020 22:10
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Matrices
{
"title": "Matrices",
"subtitle": "Hi-C Loop Patterns",
"thumbnail": "https://user-images.githubusercontent.com/932103/90644105-5b6e7900-e202-11ea-8fa3-3f9c4c469f19.jpg"
}
import { createMatrixCoverAggregator, createMatrixPreviewAggregator } from 'piling.js';
const coverAggregator = createMatrixCoverAggregator('mean');
const previewAggregator = createMatrixPreviewAggregator('mean');
export { coverAggregator, previewAggregator };
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import { interpolateOrRd, interpolateRdPu, interpolateRainbow } from 'd3-scale-chromatic';
import { createMatrixRenderer } from 'piling.js';
const darkMode = false;
function rgbStr2rgba(rgbStr, alpha = 1) {
return [
...rgbStr
.match(/rgb\((\d+),\s*(\d+),\s*(\d+)\)/)
.slice(1, 4)
.map((x) => parseInt(x, 10) / 256),
alpha,
];
}
function createColorMap(interpolator, numColors = 512, invert = false) {
let interpolatorFn;
switch (interpolator) {
case 'red':
interpolatorFn = interpolateOrRd;
break;
case 'rainbow':
interpolatorFn = interpolateRainbow;
break;
case 'purple':
default:
interpolatorFn = interpolateRdPu;
break;
}
const colorMap = new Array(numColors)
.fill(0)
.map((x, i) =>
rgbStr2rgba(
interpolatorFn(Math.abs((invert * numColors - i) / numColors))
)
);
colorMap[0] = [0, 0, 0, 0]; // Transparent
return colorMap;
}
const coverRenderer = createMatrixRenderer({
colorMap: createColorMap('red', 512, darkMode),
});
let colorMap = createColorMap('purple', 512, darkMode);
const itemRenderer = createMatrixRenderer({ colorMap });
const previewRenderer = createMatrixRenderer({
colorMap,
shape: [1, 16],
});
export {
itemRenderer,
coverRenderer,
previewRenderer,
}
import { createUmap } from 'piling.js';
const style = {
cellSize: 64,
pileCellAlignment: 'center',
pileScale: (pile) => 1 + Math.min((pile.items.length - 1) * 0.05, 0.5),
pileOrderItems: (pileState) => [...pileState.items].sort((a, b) => a - b),
previewScaling: (pile) => [
1,
Math.max(0.1, 1 - (pile.items.length - 2) / 20),
],
previewOffset: 1,
previewPadding: 2,
previewSpacing: (pile) => Math.max(0, 2 - (pile.items.length - 2) / 20),
// Technically not a style but we have to set it somewhere
dimensionalityReducer: createUmap(),
};
export default style;
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