This is a simplified template for a view configuration on Rao et al. (2014) GM12878 served from http://higlass.io. Please refer to https://github.com/flekschas/hipiler/wiki/Data#config-file how to configure the snippets (`fgm` part). In essence you need to replace the `fgm.fragments` with a double array of BEDPE like locations. This example cont…

rao-2014-gm12878-template

{
  "fgm": {
    "fragmentsServer": "//higlass.io/api/v1/",
    "fragmentsPrecision": 2,
    "fragmentsDims": 60,
    "fragmentsPadding": 50,
    "fragmentsBaseRes": 1000,
    "fragmentsPercentile": 99,
    "fragmentsIgnoreDiags": 1,
    "fragments": [
      ["chrom1", "start1", "end1", "strand1", "chrom2", "start2", "end2", "strand2", "dataset", "zoomOutLevel", "corner-score",  "U-var", "L-var", "U-sign", "L-sign"],
      ["4", 69285000, 70075000, "+", "4", 69285000, 70075000, "+", "CQMd6V_cRw6iCI_-Unl3PQ", 0, 0.098279, 0.20712, 0.43713, 0.4001, 0.40554]
    ]
  },
  "hgl": {
    "editable": false,
    "trackSourceServers": [
      "/api/v1"
    ],
    "exportViewUrl": "//higlass.io/api/v1/viewconfs/",
    "chromInfoPath": "//higlass.io/api/v1/chrom-sizes/?id=N12wVGG9SPiTkk03yUayUw&type=json&cum=1",
    "views": [
      {
        "uid": "a",
        "zoomFixed": true,
        "initialXDomain": [
          690472424,
          881626700
        ],
        "initialYDomain": [
          690472424,
          881626700
        ],
        "autocompleteSource": "//higlass.io/api/v1/suggest/?d=OHJakQICQD6gTD7skx4EWA&",
        "genomePositionSearchBoxVisible": true,
        "chromInfoPath": "//higlass.io/api/v1/chrom-sizes/?id=N12wVGG9SPiTkk03yUayUw",
        "tracks": {
          "top": [
            {
              "uid": "b",
              "type": "horizontal-gene-annotations",
              "height": 60,
              "tilesetUid": "OHJakQICQD6gTD7skx4EWA",
              "server": "//higlass.io/api/v1",
              "name": "Gene Annotations",
              "options": {
                "name": "Gene Annotations (hg19)",
                "minusStrandColor": "#999",
                "plusStrandColor": "#999"
              }
            },
            {
              "uid": "c",
              "chromInfoPath": "//higlass.io/api/v1/chrom-sizes/?id=N12wVGG9SPiTkk03yUayUw",
              "type": "horizontal-chromosome-labels",
              "name": "Chromosome Labels (hg19)",
              "height": 30
            }
          ],
          "left": [
            {
              "uid": "d",
              "chromInfoPath": "//higlass.io/api/v1/chrom-sizes/?id=N12wVGG9SPiTkk03yUayUw",
              "type": "vertical-chromosome-labels",
              "name": "Chromosome Labels (hg19)",
              "width": 30
            }
          ],
          "center": [
            {
              "uid": "e",
              "type": "combined",
              "height": 200,
              "contents": [
                {
                  "uid": "f",
                  "server": "//higlass.io/api/v1",
                  "tilesetUid": "CQMd6V_cRw6iCI_-Unl3PQ",
                  "type": "heatmap",
                  "options": {
                    "colorRange": [
                      "#FFFFFF",
                      "#ffed1a",
                      "#ff5500",
                      "#540000"
                    ],
                    "backgroundColor": "white",
                    "maxZoom": null,
                    "name": "",
                    "orgName": "Rao et al. (2014) GM12878 MboI (allreps) 1kb"
                  }
                }
              ],
              "position": "center"
            }
          ],
          "right": [],
          "bottom": []
        },
        "layout": {
          "w": 12,
          "h": 12,
          "x": 0,
          "y": 0,
          "i": "a",
          "moved": false,
          "static": false
        }
      }
    ],
    "zoomLocks": {
      "locksByViewUid": {},
      "zoomLocksDict": {}
    }
  }
}