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August 29, 2015 13:57
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Error during package installation using
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| ** testing if installed package can be loaded | |
| Error in dyn.load(file, DLLpath = DLLpath, ...) : | |
| unable to load shared object '/home/francois/phylobase.Rcheck/phylobase/libs/phylobase.so': | |
| /home/francois/phylobase.Rcheck/phylobase/libs/phylobase.so: undefined symbol: __ubsan_vptr_type_cache | |
| Error: loading failed | |
| Execution halted | |
| ERROR: loading failed | |
| _____ | |
| The command used during the package compilation is: | |
| clang++ -fsanitize=undefined -I/usr/local/lib64/R/include -DNDEBUG -I. -DHAVEINTTYPES_H -DASSERTS_TO_EXCEPTIONS -I/usr/local/include -I"/usr/local/lib64/R/library/Rcpp/include" -fpic -std=c++11 -fno-omit-frame-pointer -O3 -Wall -pedantic -mtune=native |
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PS. I took out
-fsanitize=undefined -fno-omit-frame-pointerfrom the Makevars file while compiling Rcpp and it seems to have worked (which should be OK since I don't have to UBSAN-check Rcpp itself ...)