gistfile1.txt

cmake --build cmake-build-debug --target debruijn.exe -- -j 4
cmake --build cmake-build-debug --target debruijn_tests.exe -- -j 4

// pokretanje ogirinalne
./a1.x input.fa izlaz kfile.txt 

// pokretanje aplikacije
./debruijn.exe test/res/input/ecoli_1x1e6.fasta test/res/input/10.k A1 test/res/output/ecoli_1x1e6

//pokretanje njihovog
./test/res/exe/a1.x 		   test/res/input/ecoli_1x1e6.fasta test/res/input/10.k test/res/output/ecoli_1x1e6

// pokretanje unit testova

#svi
./debruijn_tests.exe --gtest_filter=*
#A1
./debruijn_tests.exe --gtest_filter=a1*
#A2
./debruijn_tests.exe --gtest_filter=a2*


//sampling fasta
head -c 1000000 ecoli_reads.fasta > my_ecoli.fasta 
sed -n '10000000,10000020p; 10000021q' filename > output.txt

//wgsim
bash ./create_wgsim_tests.sh /home/fpopic/wgsim/ecoli_reads_246MB.fasta /home/fpopic/wgsim/out





sudo ./cgmemtime ./debruijn.exe test/res/input/ecoli_1x1e6.fasta test/res/input/10.k A1 test/res/output/ecoli_1x1e6

Child user:    1.736 s
Child sys :    1.168 s
Child wall:    2.915 s
Child high-water RSS                    : 116564 KiB


sudo ./cgmemtime  ./test/res/exe/a1.x test/res/input/ecoli_1x1e6.fasta test/res/input/10.k test/res/output/ecoli_1x1e6

Child user:    0.096 s
Child sys :    0.008 s
Child wall:    0.126 s
Child high-water RSS                    : 8328 KiB



g++ dodaj -g -pg -Q
pokrenes
gprof ./debruijn.exe | less > results.txt