SimpleElastix Python Build Mac

make_selx_mac.sh

#!/bin/bash

PYTHON_VER=$1

if [ "$PYTHON_VER" = "" ]
then
	echo "Please specify python version"
	exit -1
fi

PYTHON_MAJOR_VER=`expr "$PYTHON_VER" : '\(3\.[0-9][0-9]*\)'`
echo $PYTHON_MAJOR_VER
PYTHON_BASE_DIR="$HOME/.pyenv/versions/$PYTHON_VER"
PYTHON_INCLUDE="$PYTHON_BASE_DIR/include/python$PYTHON_MAJOR_VER"
PYTHON_BIN="$PYTHON_BASE_DIR/bin/python3"
PIP_BIN="$PYTHON_BASE_DIR/bin/pip"
PYTHON_LIB="$PYTHON_BASE_DIR/lib/libpython$PYTHON_MAJOR_VER.dylib"

SELX_DIR="$HOME/SimpleITK"
SELX_HELP_DIR="$HOME/selx_helper"

mkdir -p $SELX_DIR/build
cd $SELX_DIR/build
rm -rf SimpleITK-build/Wrapping/Python/SimpleITK
cmake ../SuperBuild
cmake -DBUILD_EXAMPLES:BOOL=OFF \
    -DBUILD_TESTING:BOOL=OFF \
    -DWRAP_CSHARP:BOOL=OFF \
    -DWRAP_JAVA:BOOL=OFF \
    -DWRAP_LUA:BOOL=OFF \
    -DWRAP_R:BOOL=OFF \
    -DWRAP_RUBY:BOOL=OFF \
    -DWRAP_TCL:BOOL=OFF \
    -DWRAP_PYTHON:BOOL=ON \
    -DPython_EXECUTABLE:STRING=$PYTHON_BIN \
    -DPython_INCLUDE_DIR:STRING=$PYTHON_INCLUDE \
    -DSimpleITK_USE_ELASTIX=ON .

make -j4

cp $SELX_HELP_DIR/setup.py SimpleITK-build/Wrapping/Python/
cd SimpleITK-build/Wrapping/Python/
$PIP_BIN install wheel setuptools
$PYTHON_BIN setup.py bdist_wheel

setup.py

import sys
import os

try:
    from setuptools import setup, Extension
    from setuptools.command.build_ext import build_ext as _build_ext
except ImportError:
    from distutils.core import setup, Extension
    from distutils.command.build_ext import build_ext as _build_ext

import re
import os.path as osp

from SimpleITK._version import __version__

def to_package_relpath(filename, pkg_name='SimpleITK'):
    return osp.relpath(filename, osp.join(os.curdir, pkg_name))

doc_files = [to_package_relpath(f) for f in [r'/Users/francesco/SimpleITK/build/SimpleITK-build/Wrapping/Python/SimpleITK/docs/LICENSE',r'/Users/francesco/SimpleElastix/build/SimpleITK-build/Wrapping/Python/SimpleITK/docs/NOTICE',r'/Users/francesco/SimpleElastix/build/SimpleITK-build/Wrapping/Python/SimpleITK/docs/README.md',r'/Users/francesco/SimpleElastix/build/SimpleITK-build/Wrapping/Python/SimpleITK/docs/ITK-5.2-NOTICE',r'/Users/francesco/SimpleElastix/build/SimpleITK-build/Wrapping/Python/SimpleITK/docs/ITK-5.2-README.md']]

with open('/Users/francesco/selx_helper/Readme_unofficial.md', encoding='utf-8') as f:
    long_description = f.read()

class build_ext(_build_ext):
    """ Override standard command class to build an extension, to
    simply copy an existing compiled library into the packaging
    directory structure.
    """

    def build_extension(self, ext):
        """
        """
        from distutils.errors import DistutilsSetupError

        sources = ext.sources
        if sources is None or not len(sources) == 1:
            raise DistutilsSetupError( "Expected only one compiled library." )

        expected_ext_filename = os.path.split(self.get_ext_filename(ext.name))[1]

        ext_file = self.get_ext_fullpath(ext.name)

        abs_sources = list( map(os.path.abspath, sources) )

        self.copy_file(abs_sources[0], ext_file)

version = __version__
version=version[:version.find('+')]

setup(
    name = 'SimpleITK-SimpleElastix',
    version = version,
    author = 'Insight Software Consortium',
    author_email = '[email protected]',
    ext_modules=[Extension('SimpleITK._SimpleITK', [r'SimpleITK/_SimpleITK.abi3.so'])],
    packages= ['SimpleITK'],
    package_data = {"SimpleITK": doc_files},
    platforms = [],
    description = r'SimpleITK is a simplified interface to the Insight Toolkit (ITK) for image registration and segmentation',
    long_description = long_description,
    long_description_content_type='text/markdown',
    classifiers=[
        "License :: OSI Approved :: Apache Software License",
        "Programming Language :: Python",
        "Programming Language :: C++",
        "Development Status :: 5 - Production/Stable",
        "Intended Audience :: Education",
        "Intended Audience :: Healthcare Industry",
        "Intended Audience :: Science/Research",
        "Topic :: Scientific/Engineering",
        "Topic :: Scientific/Engineering :: Medical Science Apps.",
        "Topic :: Scientific/Engineering :: Information Analysis",
        "Topic :: Software Development :: Libraries",
        "Operating System :: Microsoft :: Windows",
        "Operating System :: POSIX",
        "Operating System :: Unix",
        "Operating System :: MacOS"
        ],
    license='Apache',
    keywords = 'SimpleITK ITK InsightToolkit segmentation registration',
    url = r'http://simpleitk.org/',
    project_urls={
        "Bug Tracker": "https://github.com/SimpleITK/SimpleITK/issues",
        "Documentation": "https://simpleitk.readthedocs.io/en/release/",
        "Source Code": "https://github.com/SimpleITK/SimpleITK",
    },
    cmdclass={'build_ext':build_ext}
)