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Monotonic issue
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# Load libraries | |
library(brms) | |
library(tidyverse) | |
# Load data | |
data <- read_csv("temp_data.csv") | |
# Define model | |
SymptomVoice_Age_f <- bf(Outcome ~ 0 + language + language : mo(Symptom) + language : mo(Symptom) : AgeS + (1 | gr(ID, by = language))) | |
# Define priors | |
SkepticPrior1 <- c( | |
prior(normal(0, 1), class=b), | |
prior(normal(0, .1), class=b, coef = languagedk:moSymptom), | |
prior(normal(0, .1), class=b, coef = languageus:moSymptom), | |
prior(normal(0, .1), class=sd) | |
) | |
# Run model | |
m <- brm(SymptomVoice_Age_f, | |
data = data, | |
family = gaussian, | |
prior = SkepticPrior1, | |
sample_prior = T | |
) | |
# Error: | |
# Error in eval(predvars, data, env) : object 'AgeS' not found | |
## Pseudo-Fixing it | |
SymptomVoice_Age_f <- bf(Outcome ~ 0 + language + language : mo(Symptom) + language : mo(Symptom) : data$AgeS + (1 | gr(ID, by = language))) | |
m <- brm(SymptomVoice_Age_f, | |
data = data, | |
family = gaussian, | |
prior = SkepticPrior1, | |
sample_prior = T | |
) | |
# Hypothesis testing | |
hypothesis(m,"languagedk:moSymptom > languagedk:moSymptom:data$AgeS", class = "bsp") | |
# ERROR | |
#Error: Some parameters cannot be found in the model: | |
# 'bsp_languagedk:moSymptom:data', 'bsp_AgeS' | |
## Without the mo() all runs fine | |
# Define model | |
SymptomVoice_Age_f2 <- bf(Outcome ~ 0 + language + language : Symptom + language : Symptom : AgeS + (1 | gr(ID, by = language))) | |
# Define priors | |
SkepticPrior1 <- c( | |
prior(normal(0, 1), class=b), | |
prior(normal(0, .1), class=sd) | |
) | |
# Run model | |
m2 <- brm(SymptomVoice_Age_f2, | |
data = data, | |
family = gaussian, | |
prior = SkepticPrior1, | |
sample_prior = T | |
) |
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