100-days analytics for homebrew-science

gistfile1.txt

57761 opencv3
32979 opencv
 9687 matplotlib
 4541 pillow
 3303 htslib
 2879 samtools
 2059 mumps
 1927 pymol
 1867 root6
 1751 pcl
 1272 bowtie2
 1257 blast
 1140 lammps
 1072 graph-tool
 1050 ipopt
  951 ampl-mp
  942 igv
  926 cminpack
  921 dlib
  916 gmt
  845 wxmaxima
  829 bedtools
  776 openni2
  775 nco
  775 igraph
  755 hypre
  754 openni
  743 bwa
  691 root
  670 bcftools
  668 vcftools
  663 cppad
  645 sratoolkit
  645 petsc
  638 voro++
  627 cdo
  615 cantera
  587 openimageio
  584 insighttoolkit
  579 libmatio
  571 ncview
  562 superlu_dist
  541 hdf5@1.8
  539 dotwrp
  536 tophat
  513 maxima
  485 superlu43
  468 bowtie
  463 openalpr
  438 gmsh
  438 fastqc
  427 bamtools
  422 hmmer
  418 igvtools
  416 cufflinks
  413 diamond
  403 sundials
  394 nlopt
  394 field3d
  391 kallisto
  386 muscle
  385 gromacs
  378 raxml
  366 parmetis
  363 cd-hit
  343 paraview
  342 picard-tools
  342 opencascade
  324 anvio
  304 prodigal
  300 rstudio-server
  289 express
  286 slepc
  286 circos
  283 trilinos
  278 fastx_toolkit
  277 h5utils
  277 fasttree
  276 cgns
  273 clinfo
  262 mummer
  257 trimmomatic
  257 mcl
  250 geant4
  247 pear
  243 clfft
  241 med-file
  237 gdcm
  234 mafft
  233 bedops
  232 orocos-kdl
  231 nest
  229 jellyfish
  227 spades
  223 trinity
  216 emboss
  212 scotch
  206 seqtk
  204 xfig
  204 datamash
  201 lp_solve
  197 openfst
  197 fgsl
  194 g2o
  193 vigra
  184 oce
  184 nextflow
  181 tbl2asn
  181 butterflow
  177 libsigrokdecode
  175 clblas
  174 nglib
  173 infernal
  170 hisat2
  168 freebayes
  165 hdf4
  162 gatk
  162 dynare
  160 nanopolish
  160 astrometry-net
  158 perf
  154 prokka
  154 gnudatalanguage
  152 barrnap
  151 pandaseq
  148 gmt4
  145 wcslib
  145 vcflib
  144 blasr
  139 libccd
  138 mathgl
  138 enblend-enfuse
  137 shogun
  134 adol-c
  133 bioawk
  133 aragorn
  127 liblbfgs
  125 minced
  125 colpack
  124 paml
  123 meme
  123 dssp
  122 exonerate
  121 blat
  121 arrayfire
  120 snpeff
  118 sextractor
  118 rna-star
  118 poretools
  116 geda-gaf
  112 ncl
  111 littler
  108 cmdstan
  108 abyss
  107 vt
  107 dealii
  103 plink
  102 mrbayes
  102 ds9
  100 plink2
   97 lmod
   95 slicot
   95 canu
   94 boost-compute
   93 gap
   92 edirect
   91 pulseview
   90 abinit
   89 clustal-omega
   86 pcb
   85 repeatmasker
   84 pspp
   81 genometools
   81 dwgsim
   77 opencollada
   77 mlpack
   75 neuron
   75 augustus
   74 sigrok-cli
   74 rmblast
   73 libsbml
   72 lastz
   72 alembic
   71 ess
   71 beagle
   70 osgearth
   70 calculix-ccx
   69 seqan
   69 readseq
   69 libbi
   68 velvet
   68 siril
   68 samtools@0.1
   67 salmon
   67 molden
   66 p4est
   66 kent-tools
   65 quast
   64 prank
   64 pastix
   63 mbsystem
   62 sumo
   62 dsdp
   62 clustal-w
   61 cp2k
   60 sambamba
   58 trf
   56 stringtie
   55 salt
   53 kraken
   53 e-mem
   52 simpleitk
   52 phylip
   52 openbr
   52 kmc
   52 etsf_io
   52 arb
   50 symphony
   50 fann
   49 parallel-netcdf
   49 flash
   47 wcstools
   47 pilon
   47 opengrm-thrax
   47 mash
   47 adapterremoval
   46 unafold
   46 primer3
   46 mira
   45 iqtree
   45 apophenia
   44 transdecoder
   44 pcap
   44 packmol
   44 opengrm-ngram
   44 coinmp
   43 vsearch
   42 soapdenovo
   42 jmol
   42 gmap-gsnap
   42 ea-utils
   42 art
   41 openmeeg
   41 libsequence
   40 cytoscape
   40 cutadapt
   39 megahit
   39 hmmer2
   39 crfsuite
   39 beast2
   38 visp
   38 viennarna
   38 phyml
   37 maude
   37 flint
   36 varscan
   36 healpix
   36 getdp
   35 snp-sites
   35 snoscan
   35 repeatmodeler
   35 ncbi-c++-toolkit
   35 gubbins
   35 galsim
   35 cddlib
   35 ccfits
   34 minimap
   34 bless
   34 beast
   34 bbtools
   33 trimal
   33 nexusformat
   33 mothur
   33 alpscore
   32 libbuddy
   32 alglib
   31 topcat
   31 ticcutils
   31 tetgen
   31 tamarin-prover
   31 snap
   30 sickle
   30 qcl
   30 last
   30 fastq-tools
   30 ann
   29 triangle
   29 radx
   29 quake
   29 ggobi
   28 vcfanno
   28 idba
   28 bamm
   27 silo
   27 recon
   27 racon
   27 qualimap
   27 miniasm
   26 mallet
   26 fwdpp
   26 blaze-lib
   25 xmgredit
   25 wiggletools
   25 repeatscout
   25 lapack-manpages
   25 bamutil
   24 stacks
   24 centrifuge
   24 andi
   24 analysis
   23 xraylib
   23 numdiff
   23 maker
   23 libbigwig
   23 fasta
   23 delly
   23 busco
   23 bpipe
   23 bam-readcount
   23 artemis
   22 weblogo
   22 tmv-cpp
   22 rnammer
   21 trnascan
   21 novoalign
   21 moose
   21 mathomatic
   21 maq
   21 galib
   21 amos
   20 gnuastro
   20 cuba
   20 concorde
   19 t-coffee
   19 statismo
   19 scram
   19 r8s
   19 parsnp
   19 kat
   19 clonehd
   19 cdsclient
   18 yices
   18 therion
   18 spatialite-gis
   18 kmergenie
   18 cap3
   18 a5
   17 symengine
   17 scamp
   17 rainbow
   17 pathvisio
   17 nusmv
   17 mfusg
   17 metaphlan
   17 hyphy
   17 harry
   17 circlator
   17 breseq
   17 acado
   16 tisean
   16 smalt
   16 scotch5
   16 samblaster
   16 qsopt
   16 phlawd
   16 nixio
   16 nip2
   16 nauty
   16 glimmer3
   16 freec
   16 ensembl-tools
   16 elph
   16 cegma
   15 ucsc-genome-browser
   15 shark
   15 lmfit
   15 inter-views
   15 hisat
   15 genewise
   15 fplll
   15 data-science-toolbox
   15 cmor
   15 blis
   15 bfc
   15 bayestraits
   15 adam
   14 reapr
   14 quicktree
   14 plasma
   14 orthofinder
   14 meraculous
   14 madlib
   14 libsbol
   14 dgtal
   14 ascii_plots
   13 yaggo
   13 sequel
   13 mlst
   13 lumpy-sv
   13 geneid
   13 clips
   13 beetl
   13 bali-phy
   13 alien-hunter
   12 superlu_mt
   12 sortmerna
   12 snid
   12 proteinortho
   12 phyutility
   12 omcompiler
   12 msieve
   12 moab
   12 megam
   12 itensor
   12 einspline
   12 discovardenovo
   11 swarm
   11 sailfish
   11 qr_mumps
   11 newick-utils
   11 nccmp
   11 mfem
   11 lis
   11 libgpkg
   11 kalign
   11 glimmerhmm
   11 fastml
   11 clonalframeml
   11 atompaw
   11 abacas
   10 xmi-msim
   10 sga
   10 sally
   10 plr
   10 oswitch
   10 libminc
   10 libctl
   10 libcerf
   10 kaiju
   10 k8
   10 humann2
   10 hotspot
   10 crlibm
   10 corset
   10 ckon
   10 biopp
   10 biobloomtools
   10 atomic-pseudopotential-engine
    9 xylib
    9 wcalc
    9 velvetoptimiser
    9 transpose
    9 soplex
    9 smrtanalysis
    9 pykep
    9 pocl
    9 metis4
    9 mad-x
    9 m4ri
    9 lobstr
    9 gingr
    9 cvblob
    9 biomake
    9 bamhash
    9 atram
    8 vislcg3
    8 trimadap
    8 sollya
    8 shrimp
    8 nfft
    8 lighter
    8 harvest-tools
    8 gmtk
    8 dextractor
    8 clark
    8 atpdec
    8 aribas
    8 arcs
    8 afra
    7 seq-gen
    7 ropebwt2
    7 niftilib
    7 libpll
    7 impute2
    7 graphlan
    7 gatb
    7 elemental
    7 daligner
    7 bitseq
    7 biointerchange
    7 bcalm
    7 bact
    7 ate-pairing
    7 ace-corrector
    6 uproc
    6 transrate-tools
    6 trans_proteomic_pipeline
    6 swrcfit
    6 swetest
    6 sllib
    6 seqdb
    6 sdsl-lite
    6 ray
    6 quaff
    6 phyx
    6 ntcard
    6 mir-prefer
    6 libdivsufsort
    6 flexbar
    6 fermi2
    6 des
    6 deeplearning4j-cli
    6 dadadodo
    6 cerulean
    6 bwtdisk
    6 astral
    6 abyss-explorer
    5 zoltan
    5 wfdb
    5 tagdust
    5 tabtk
    5 stiff
    5 skewer
    5 proverif
    5 paxtools
    5 minia
    5 mantaflow
    5 macse
    5 links-scaffolder
    5 lightstringgraph
    5 libeemd
    5 jsbsim
    5 jellyfish-1.1
    5 jblas
    5 htsbox
    5 gtsam
    5 grabix
    5 flux-simulator
    5 exabayes
    5 cryptoverif
    4 yeppp
    4 uniqtag
    4 rapsearch2
    4 platypusvar
    4 ome-common
    4 nxtrim
    4 mtl
    4 methpipe
    4 iva
    4 glpk448
    4 fermikit
    4 fastuniq
    4 dl_poly_classic
    4 dazz_db
    4 cube
    4 biocgal
    4 arow++
    4 armadillo
    3 yass
    3 xcdf
    3 xbyak
    3 timbl
    3 simulate-pcr
    3 readsim
    3 rcorrector
    3 rampart
    3 pilercr
    3 piler
    3 phipack
    3 ococo
    3 oases
    3 lola
    3 lie
    3 joinx
    3 itsol
    3 gfan
    3 fermi-lite
    3 celera-assembler
    3 bpel2owfn
    2 xrmc
    2 tasr
    2 sisl
    2 quip
    2 psmc
    2 prooftree
    2 pnapi
    2 pbsuite
    2 pathd8
    2 ome-xml
    2 ome-files
    2 nonpareil
    2 newicktools
    2 mhap
    2 lsd
    2 kmerstream
    2 kissplice
    2 hopdm
    2 garli
    2 fermi
    2 fcgene
    2 dsk
    2 discovar
    1 vcake
    1 ssake
    1 snap-aligner
    1 sfscode
    1 qsopt_ex
    1 populations
    1 poa
    1 oma
    1 multi-worm-tracker
    1 mrfast
    1 mpsolve
    1 gmcloser
    1 giira
    1 genet
    1 galfit
    1 fsa
    1 fqzcomp
    1 cusp
    1 biopieces
    0 yaha
    0 wopr
    0 vague
    0 utgb
    0 ucto
    0 transtermhp
    0 trans-abyss
    0 squeezambler
    0 spici
    0 spaced
    0 scrm
    0 scarpa
    0 sbagen
    0 sara
    0 sais
    0 ropebwt
    0 rml-mmc
    0 rate4site
    0 quorum
    0 quest
    0 ogdraw
    0 mitofy
    0 masurca
    0 mapsembler2
    0 libfolia
    0 kollector
    0 kmacs
    0 idcoefs
    0 hlaminer
    0 gaemr
    0 edena
    0 dida
    0 allpaths-lg