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Bash xargs script to run parallel MATLAB and Octave jobs
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#!/bin/bash | |
# | |
# Bash script using xargs to run Matlab and Octave jobs in parallel. | |
# | |
n_parruns=16 # Total number of runs. | |
n_parproc=3 # Number of simultaneous parallel processes. | |
# Define Matlab/Octave executable and main m-scipt file to run. | |
export runcmd='/mnt/c/Octave/Octave-4.2.1/bin/octave-cli.exe' | |
# export runcmd='/mnt/c/Program\ Files/MATLAB/R2017a/bin/matlab.exe -nojvm -nosplash -r' | |
export mscript=mscript.m | |
# echo "disp(['test ',num2str(i_parrun)])"$'\npause(5)' > $mscript # Test script. | |
function parfun | |
{ | |
echo parproc$1-$$: start # Terminal output. | |
# Write parproc file to temporary (current) directory. | |
tempdir=$(pwd) | |
echo > "$tempdir/parproc$1-$$" | |
# Octave/Matlab command string. | |
cmdstr="i_parrun = $1; | |
$(sed -n '/exit/!p;//q' $mscript) | |
delete([pwd,filesep,'parproc$1-$$']);" | |
if [[ $runcmd == *"matlab"* ]]; then | |
cmdstr="$cmdstr | |
exit" | |
eval $runcmd" \"$cmdstr\"" | |
else | |
echo "$cmdstr" > mscript_$1.m | |
eval $runcmd" mscript_$1.m" | |
fi | |
# Sleep while parproc file exists. | |
while [ -f "$tempdir/parproc$1-$$" ] | |
do | |
sleep 1 | |
done | |
# Cleanup. | |
if [[ $runcmd != *"matlab"* ]]; then | |
rm -f mscript_$1.m | |
fi | |
rm -f parproc$1-$$ | |
echo parproc$1-$$: end # Terminal output. | |
} | |
export -f parfun | |
eval "printf \"%i\n\" {1..$n_parruns}" | xargs -n 1 -P $n_parproc -I {} bash -c 'parfun "$@"' _ {} |
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