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Denoising Autoencoder implementation using TensorFlow.
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| import tensorflow as tf | |
| import numpy as np | |
| import os | |
| import zconfig | |
| import utils | |
| class DenoisingAutoencoder(object): | |
| """ Implementation of Denoising Autoencoders using TensorFlow. | |
| The interface of the class is sklearn-like. | |
| """ | |
| def __init__(self, model_name='dae', n_components=256, main_dir='dae/', enc_act_func='tanh', | |
| dec_act_func='none', loss_func='mean_squared', num_epochs=10, batch_size=10, dataset='mnist', | |
| xavier_init=1, opt='gradient_descent', learning_rate=0.01, momentum=0.5, corr_type='none', | |
| corr_frac=0., verbose=1, seed=-1): | |
| """ | |
| :param main_dir: main directory to put the models, data and summary directories | |
| :param n_components: number of hidden units | |
| :param enc_act_func: Activation function for the encoder. ['tanh', 'sigmoid'] | |
| :param dec_act_func: Activation function for the decoder. ['tanh', 'sigmoid'] | |
| :param loss_func: Loss function. ['mean_squared', 'cross_entropy'] | |
| :param xavier_init: Value of the constant for xavier weights initialization | |
| :param opt: Which tensorflow optimizer to use. ['gradient_descent', 'momentum', 'ada_grad'] | |
| :param learning_rate: Initial learning rate | |
| :param momentum: Momentum parameter | |
| :param corr_type: Type of input corruption. ["none", "masking", "salt_and_pepper"] | |
| :param corr_frac: Fraction of the input to corrupt. | |
| :param verbose: Level of verbosity. 0 - silent, 1 - print accuracy. | |
| :param num_epochs: Number of epochs | |
| :param batch_size: Size of each mini-batch | |
| :param dataset: Optional name for the dataset. | |
| :param seed: positive integer for seeding random generators. Ignored if < 0. | |
| """ | |
| self.model_name = model_name | |
| self.n_components = n_components | |
| self.main_dir = main_dir | |
| self.enc_act_func = enc_act_func | |
| self.dec_act_func = dec_act_func | |
| self.loss_func = loss_func | |
| self.num_epochs = num_epochs | |
| self.batch_size = batch_size | |
| self.dataset = dataset | |
| self.xavier_init = xavier_init | |
| self.opt = opt | |
| self.learning_rate = learning_rate | |
| self.momentum = momentum | |
| self.corr_type = corr_type | |
| self.corr_frac = corr_frac | |
| self.verbose = verbose | |
| self.seed = seed | |
| if self.seed >= 0: | |
| np.random.seed(self.seed) | |
| tf.set_random_seed(self.seed) | |
| self.models_dir, self.data_dir, self.tf_summary_dir = self._create_data_directories() | |
| self.model_path = self.models_dir + self.model_name | |
| self.input_data = None | |
| self.input_data_corr = None | |
| self.W_ = None | |
| self.bh_ = None | |
| self.bv_ = None | |
| self.encode = None | |
| self.decode = None | |
| self.train_step = None | |
| self.cost = None | |
| self.tf_session = None | |
| self.tf_merged_summaries = None | |
| self.tf_summary_writer = None | |
| self.tf_saver = None | |
| def fit(self, train_set, validation_set=None, restore_previous_model=False): | |
| """ Fit the model to the data. | |
| :param train_set: Training data. | |
| :param validation_set: optional, default None. Validation data. | |
| :param restore_previous_model: | |
| if true, a previous trained model | |
| with the same name of this model is restored from disk to continue training. | |
| :return: self | |
| """ | |
| n_features = train_set.shape[1] | |
| self._build_model(n_features) | |
| with tf.Session() as self.tf_session: | |
| self._initialize_tf_utilities_and_ops(restore_previous_model) | |
| self._train_model(train_set, validation_set) | |
| self.tf_saver.save(self.tf_session, self.models_dir + self.model_name) | |
| def _initialize_tf_utilities_and_ops(self, restore_previous_model): | |
| """ Initialize TensorFlow operations: summaries, init operations, saver, summary_writer. | |
| Restore a previously trained model if the flag restore_previous_model is true. | |
| """ | |
| self.tf_merged_summaries = tf.merge_all_summaries() | |
| init_op = tf.initialize_all_variables() | |
| self.tf_saver = tf.train.Saver() | |
| self.tf_session.run(init_op) | |
| if restore_previous_model: | |
| self.tf_saver.restore(self.tf_session, self.model_path) | |
| self.tf_summary_writer = tf.train.SummaryWriter(self.tf_summary_dir, self.tf_session.graph_def) | |
| def _train_model(self, train_set, validation_set): | |
| """Train the model. | |
| :param train_set: training set | |
| :param validation_set: validation set. optional, default None | |
| :return: self | |
| """ | |
| corruption_ratio = np.round(self.corr_frac * train_set.shape[1]).astype(np.int) | |
| for i in range(self.num_epochs): | |
| self._run_train_step(train_set, corruption_ratio) | |
| if i % 5 == 0: | |
| if validation_set is not None: | |
| self._run_validation_error_and_summaries(i, validation_set) | |
| def _run_train_step(self, train_set, corruption_ratio): | |
| """ Run a training step. A training step is made by randomly corrupting the training set, | |
| randomly shuffling it, divide it into batches and run the optimizer for each batch. | |
| :param train_set: training set | |
| :param corruption_ratio: fraction of elements to corrupt | |
| :return: self | |
| """ | |
| x_corrupted = self._corrupt_input(train_set, corruption_ratio) | |
| shuff = zip(train_set, x_corrupted) | |
| np.random.shuffle(shuff) | |
| batches = [_ for _ in utils.gen_batches(shuff, self.batch_size)] | |
| for batch in batches: | |
| x_batch, x_corr_batch = zip(*batch) | |
| tr_feed = {self.input_data: x_batch, self.input_data_corr: x_corr_batch} | |
| self.tf_session.run(self.train_step, feed_dict=tr_feed) | |
| def _corrupt_input(self, data, v): | |
| """ Corrupt a fraction 'v' of 'data' according to the | |
| noise method of this autoencoder. | |
| :return: corrupted data | |
| """ | |
| if self.corr_type == 'masking': | |
| x_corrupted = utils.masking_noise(data, v) | |
| elif self.corr_type == 'salt_and_pepper': | |
| x_corrupted = utils.salt_and_pepper_noise(data, v) | |
| elif self.corr_type == 'none': | |
| x_corrupted = data | |
| else: | |
| x_corrupted = None | |
| return x_corrupted | |
| def _run_validation_error_and_summaries(self, epoch, validation_set): | |
| """ Run the summaries and error computation on the validation set. | |
| :param epoch: current epoch | |
| :param validation_set: validation data | |
| :return: self | |
| """ | |
| vl_feed = {self.input_data: validation_set, self.input_data_corr: validation_set} | |
| result = self.tf_session.run([self.tf_merged_summaries, self.cost], feed_dict=vl_feed) | |
| summary_str = result[0] | |
| err = result[1] | |
| self.tf_summary_writer.add_summary(summary_str, epoch) | |
| if self.verbose == 1: | |
| print("Validation cost at step %s: %s" % (epoch, err)) | |
| def _build_model(self, n_features): | |
| """ Creates the computational graph. | |
| :type n_features: int | |
| :param n_features: Number of features. | |
| :return: self | |
| """ | |
| self.input_data, self.input_data_corr = self._create_placeholders(n_features) | |
| self.W_, self.bh_, self.bv_ = self._create_variables(n_features) | |
| self._create_encode_layer() | |
| self._create_decode_layer() | |
| self._create_cost_function_node() | |
| self._create_train_step_node() | |
| def _create_placeholders(self, n_features): | |
| """ Create the TensorFlow placeholders for the model. | |
| :return: tuple(input_data(shape(None, n_features)), | |
| input_data_corr(shape(None, n_features))) | |
| """ | |
| input_data = tf.placeholder('float', [None, n_features], name='x-input') | |
| input_data_corr = tf.placeholder('float', [None, n_features], name='x-corr-input') | |
| return input_data, input_data_corr | |
| def _create_variables(self, n_features): | |
| """ Create the TensorFlow variables for the model. | |
| :return: tuple(weights(shape(n_features, n_components)), | |
| hidden bias(shape(n_components)), | |
| visible bias(shape(n_features))) | |
| """ | |
| W_ = tf.Variable(utils.xavier_init(n_features, self.n_components, self.xavier_init), name='enc-w') | |
| bh_ = tf.Variable(tf.zeros([self.n_components]), name='hidden-bias') | |
| bv_ = tf.Variable(tf.zeros([n_features]), name='visible-bias') | |
| return W_, bh_, bv_ | |
| def _create_encode_layer(self): | |
| """ Create the encoding layer of the network. | |
| :return: self | |
| """ | |
| with tf.name_scope("W_x_bh"): | |
| if self.enc_act_func == 'sigmoid': | |
| self.encode = tf.nn.sigmoid(tf.matmul(self.input_data_corr, self.W_) + self.bh_) | |
| elif self.enc_act_func == 'tanh': | |
| self.encode = tf.nn.tanh(tf.matmul(self.input_data_corr, self.W_) + self.bh_) | |
| else: | |
| self.encode = None | |
| def _create_decode_layer(self): | |
| """ Create the decoding layer of the network. | |
| :return: self | |
| """ | |
| with tf.name_scope("Wg_y_bv"): | |
| if self.dec_act_func == 'sigmoid': | |
| self.decode = tf.nn.sigmoid(tf.matmul(self.encode, tf.transpose(self.W_)) + self.bv_) | |
| elif self.dec_act_func == 'tanh': | |
| self.decode = tf.nn.tanh(tf.matmul(self.encode, tf.transpose(self.W_)) + self.bv_) | |
| elif self.dec_act_func == 'none': | |
| self.decode = tf.matmul(self.encode, tf.transpose(self.W_)) + self.bv_ | |
| else: | |
| self.decode = None | |
| def _create_cost_function_node(self): | |
| """ create the cost function node of the network. | |
| :return: self | |
| """ | |
| with tf.name_scope("cost"): | |
| if self.loss_func == 'cross_entropy': | |
| self.cost = - tf.reduce_sum(self.input_data * tf.log(self.decode)) | |
| _ = tf.scalar_summary("cross_entropy", self.cost) | |
| elif self.loss_func == 'mean_squared': | |
| self.cost = tf.sqrt(tf.reduce_mean(tf.square(self.input_data - self.decode))) | |
| _ = tf.scalar_summary("mean_squared", self.cost) | |
| else: | |
| self.cost = None | |
| def _create_train_step_node(self): | |
| """ create the training step node of the network. | |
| :return: self | |
| """ | |
| with tf.name_scope("train"): | |
| if self.opt == 'gradient_descent': | |
| self.train_step = tf.train.GradientDescentOptimizer(self.learning_rate).minimize(self.cost) | |
| elif self.opt == 'ada_grad': | |
| self.train_step = tf.train.AdagradOptimizer(self.learning_rate).minimize(self.cost) | |
| elif self.opt == 'momentum': | |
| self.train_step = tf.train.MomentumOptimizer(self.learning_rate, self.momentum).minimize(self.cost) | |
| else: | |
| self.train_step = None | |
| def transform(self, data, name='train', save=False): | |
| """ Transform data according to the model. | |
| :param data: Data to transform | |
| :param name: Identifier for the data that is being encoded | |
| :param save: If true, save data to disk | |
| :return: transformed data | |
| """ | |
| with tf.Session() as self.tf_session: | |
| self.tf_saver.restore(self.tf_session, self.models_dir + self.model_name) | |
| encoded_data = self.encode.eval({self.input_data_corr: data}) | |
| if save: | |
| np.save(self.data_dir + self.model_name + '-' + name, encoded_data) | |
| return encoded_data | |
| def load_model(self, shape, model_path): | |
| """ Restore a previously trained model from disk. | |
| :param shape: tuple(n_features, n_components) | |
| :param model_path: path to the trained model | |
| :return: self, the trained model | |
| """ | |
| self.n_components = shape[1] | |
| self._build_model(shape[0]) | |
| init_op = tf.initialize_all_variables() | |
| self.tf_saver = tf.train.Saver() | |
| with tf.Session() as self.tf_session: | |
| self.tf_session.run(init_op) | |
| self.tf_saver.restore(self.tf_session, model_path) | |
| def get_model_parameters(self): | |
| """ Return the model parameters in the form of numpy arrays. | |
| :return: model parameters | |
| """ | |
| with tf.Session() as self.tf_session: | |
| self.tf_saver.restore(self.tf_session, self.models_dir + self.model_name) | |
| return { | |
| 'enc_w': self.W_.eval(), | |
| 'enc_b': self.bh_.eval(), | |
| 'dec_b': self.bv_.eval() | |
| } | |
| def _create_data_directories(self): | |
| """ Create the three directories for storing respectively the models, | |
| the data generated by training and the TensorFlow's summaries. | |
| :return: tuple of strings(models_dir, data_dir, summary_dir) | |
| """ | |
| self.main_dir = self.main_dir + '/' if self.main_dir[-1] != '/' else self.main_dir | |
| models_dir = zconfig.models_dir + self.main_dir | |
| data_dir = zconfig.data_dir + self.main_dir | |
| summary_dir = zconfig.summary_dir + self.main_dir | |
| for d in [models_dir, data_dir, summary_dir]: | |
| if not os.path.isdir(d): | |
| os.mkdir(d) | |
| return models_dir, data_dir, summary_dir | |
| def get_weights_as_images(self, width, height, outdir='img/', max_images=10, model_path=None): | |
| """ Save the weights of this autoencoder as images, one image per hidden unit. | |
| Useful to visualize what the autoencoder has learned. | |
| :type width: int | |
| :param width: Width of the images | |
| :type height: int | |
| :param height: Height of the images | |
| :type outdir: string, default 'data/sdae/img' | |
| :param outdir: Output directory for the images. This path is appended to self.data_dir | |
| :type max_images: int, default 10 | |
| :param max_images: Number of images to return. | |
| """ | |
| assert max_images <= self.n_components | |
| outdir = self.data_dir + outdir | |
| if not os.path.isdir(outdir): | |
| os.mkdir(outdir) | |
| with tf.Session() as self.tf_session: | |
| if model_path is not None: | |
| self.tf_saver.restore(self.tf_session, model_path) | |
| else: | |
| self.tf_saver.restore(self.tf_session, self.models_dir + self.model_name) | |
| enc_weights = self.W_.eval() | |
| perm = np.random.permutation(self.n_components)[:max_images] | |
| for p in perm: | |
| enc_w = np.array([i[p] for i in enc_weights]) | |
| image_path = outdir + self.model_name + '-enc_weights_{}.png'.format(p) | |
| utils.gen_image(enc_w, width, height, image_path) |
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| import tensorflow as tf | |
| import autoencoder | |
| import datasets | |
| # #################### # | |
| # Flags definition # | |
| # #################### # | |
| flags = tf.app.flags | |
| FLAGS = flags.FLAGS | |
| # Global configuration | |
| flags.DEFINE_string('model_name', '', 'Model name.') | |
| flags.DEFINE_string('dataset', 'mnist', 'Which dataset to use. ["mnist", "cifar10"]') | |
| flags.DEFINE_string('cifar_dir', '', 'Path to the cifar 10 dataset directory.') | |
| flags.DEFINE_integer('seed', -1, 'Seed for the random generators (>= 0). Useful for testing hyperparameters.') | |
| flags.DEFINE_boolean('restore_previous_model', False, 'If true, restore previous model corresponding to model name.') | |
| flags.DEFINE_boolean('encode_train', False, 'Whether to encode and store the training set.') | |
| flags.DEFINE_boolean('encode_valid', False, 'Whether to encode and store the validation set.') | |
| flags.DEFINE_boolean('encode_test', False, 'Whether to encode and store the test set.') | |
| # Stacked Denoising Autoencoder specific parameters | |
| flags.DEFINE_integer('n_components', 256, 'Number of hidden units in the dae.') | |
| flags.DEFINE_string('corr_type', 'none', 'Type of input corruption. ["none", "masking", "salt_and_pepper"]') | |
| flags.DEFINE_float('corr_frac', 0., 'Fraction of the input to corrupt.') | |
| flags.DEFINE_integer('xavier_init', 1, 'Value for the constant in xavier weights initialization.') | |
| flags.DEFINE_string('enc_act_func', 'tanh', 'Activation function for the encoder. ["sigmoid", "tanh"]') | |
| flags.DEFINE_string('dec_act_func', 'none', 'Activation function for the decoder. ["sigmoid", "tanh", "none"]') | |
| flags.DEFINE_string('main_dir', 'dae/', 'Directory to store data relative to the algorithm.') | |
| flags.DEFINE_string('loss_func', 'mean_squared', 'Loss function. ["mean_squared" or "cross_entropy"]') | |
| flags.DEFINE_integer('verbose', 0, 'Level of verbosity. 0 - silent, 1 - print accuracy.') | |
| flags.DEFINE_integer('weight_images', 0, 'Number of weight images to generate.') | |
| flags.DEFINE_string('opt', 'gradient_descent', '["gradient_descent", "ada_grad", "momentum"]') | |
| flags.DEFINE_float('learning_rate', 0.01, 'Initial learning rate.') | |
| flags.DEFINE_float('momentum', 0.5, 'Momentum parameter.') | |
| flags.DEFINE_integer('num_epochs', 10, 'Number of epochs.') | |
| flags.DEFINE_integer('batch_size', 10, 'Size of each mini-batch.') | |
| assert FLAGS.dataset in ['mnist', 'cifar10'] | |
| assert FLAGS.enc_act_func in ['sigmoid', 'tanh'] | |
| assert FLAGS.dec_act_func in ['sigmoid', 'tanh', 'none'] | |
| assert FLAGS.corr_type in ['masking', 'salt_and_pepper', 'none'] | |
| assert 0. <= FLAGS.corr_frac <= 1. | |
| assert FLAGS.loss_func in ['cross_entropy', 'mean_squared'] | |
| assert FLAGS.opt in ['gradient_descent', 'ada_grad', 'momentum'] | |
| if __name__ == '__main__': | |
| if FLAGS.dataset == 'mnist': | |
| # ################# # | |
| # MNIST Dataset # | |
| # ################# # | |
| trX, vlX, teX = datasets.load_mnist_dataset(mode='unsupervised') | |
| elif FLAGS.dataset == 'cifar10': | |
| # ################### # | |
| # Cifar10 Dataset # | |
| # ################### # | |
| trX, teX = datasets.load_cifar10_dataset(FLAGS.cifar_dir, mode='unsupervised') | |
| vlX = teX[:5000] # Validation set is the first half of the test set | |
| else: # cannot be reached, just for completeness | |
| trX = None | |
| vlX = None | |
| teX = None | |
| # Create the object | |
| dae = autoencoder.DenoisingAutoencoder( | |
| seed=FLAGS.seed, model_name=FLAGS.model_name, n_components=FLAGS.n_components, | |
| enc_act_func=FLAGS.enc_act_func, dec_act_func=FLAGS.dec_act_func, xavier_init=FLAGS.xavier_init, | |
| corr_type=FLAGS.corr_type, corr_frac=FLAGS.corr_frac, dataset=FLAGS.dataset, | |
| loss_func=FLAGS.loss_func, main_dir=FLAGS.main_dir, opt=FLAGS.opt, | |
| learning_rate=FLAGS.learning_rate, momentum=FLAGS.momentum, | |
| verbose=FLAGS.verbose, num_epochs=FLAGS.num_epochs, batch_size=FLAGS.batch_size) | |
| # Fit the model | |
| dae.fit(trX, teX, restore_previous_model=FLAGS.restore_previous_model) | |
| # Encode the training data and store it | |
| dae.transform(trX, name='train', save=FLAGS.encode_train) | |
| dae.transform(vlX, name='validation', save=FLAGS.encode_valid) | |
| dae.transform(teX, name='test', save=FLAGS.encode_test) | |
| # save images | |
| dae.get_weights_as_images(28, 28, max_images=FLAGS.weight_images) | |
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| from scipy import misc | |
| import tensorflow as tf | |
| import numpy as np | |
| # ############# # | |
| # Utilities # | |
| # ############# # | |
| def xavier_init(fan_in, fan_out, const=1): | |
| """ Xavier initialization of network weights. | |
| https://stackoverflow.com/questions/33640581/how-to-do-xavier-initialization-on-tensorflow | |
| :param fan_in: fan in of the network (n_features) | |
| :param fan_out: fan out of the network (n_components) | |
| :param const: multiplicative constant | |
| """ | |
| low = -const * np.sqrt(6.0 / (fan_in + fan_out)) | |
| high = const * np.sqrt(6.0 / (fan_in + fan_out)) | |
| return tf.random_uniform((fan_in, fan_out), minval=low, maxval=high) | |
| def gen_batches(data, batch_size): | |
| """ Divide input data into batches. | |
| :param data: input data | |
| :param batch_size: size of each batch | |
| :return: data divided into batches | |
| """ | |
| data = np.array(data) | |
| for i in range(0, data.shape[0], batch_size): | |
| yield data[i:i+batch_size] | |
| def masking_noise(X, v): | |
| """ Apply masking noise to data in X, in other words a fraction v of elements of X | |
| (chosen at random) is forced to zero. | |
| :param X: array_like, Input data | |
| :param v: int, fraction of elements to distort | |
| :return: transformed data | |
| """ | |
| X_noise = X.copy() | |
| n_samples = X.shape[0] | |
| n_features = X.shape[1] | |
| for i in range(n_samples): | |
| mask = np.random.randint(0, n_features, v) | |
| for m in mask: | |
| X_noise[i][m] = 0. | |
| return X_noise | |
| def salt_and_pepper_noise(X, v): | |
| """ Apply salt and pepper noise to data in X, in other words a fraction v of elements of X | |
| (chosen at random) is set to its maximum or minimum value according to a fair coin flip. | |
| If minimum or maximum are not given, the min (max) value in X is taken. | |
| :param X: array_like, Input data | |
| :param v: int, fraction of elements to distort | |
| :return: transformed data | |
| """ | |
| X_noise = X.copy() | |
| n_features = X.shape[1] | |
| mn = X.min() | |
| mx = X.max() | |
| for i, sample in enumerate(X): | |
| mask = np.random.randint(0, n_features, v) | |
| for m in mask: | |
| if np.random.random() < 0.5: | |
| X_noise[i][m] = mn | |
| else: | |
| X_noise[i][m] = mx | |
| return X_noise | |
| def masking_noise(X, v): | |
| """ Apply masking noise to data in X, in other words a fraction v of elements of X | |
| (chosen at random) is forced to zero. | |
| :param X: array_like, Input data | |
| :param v: int, fraction of elements to distort | |
| :return: transformed data | |
| """ | |
| X_noise = X.copy() | |
| n_samples = X.shape[0] | |
| n_features = X.shape[1] | |
| for i in range(n_samples): | |
| mask = np.random.randint(0, n_features, v) | |
| for m in mask: | |
| X_noise[i][m] = 0. | |
| return X_noise | |
| def salt_and_pepper_noise(X, v): | |
| """ Apply salt and pepper noise to data in X, in other words a fraction v of elements of X | |
| (chosen at random) is set to its maximum or minimum value according to a fair coin flip. | |
| If minimum or maximum are not given, the min (max) value in X is taken. | |
| :param X: array_like, Input data | |
| :param v: int, fraction of elements to distort | |
| :return: transformed data | |
| """ | |
| X_noise = X.copy() | |
| n_features = X.shape[1] | |
| mn = X.min() | |
| mx = X.max() | |
| for i, sample in enumerate(X): | |
| mask = np.random.randint(0, n_features, v) | |
| for m in mask: | |
| if np.random.random() < 0.5: | |
| X_noise[i][m] = mn | |
| else: | |
| X_noise[i][m] = mx | |
| return X_noise | |
| def gen_image(img, width, height, outfile, img_type='grey'): | |
| assert len(img) == width * height or len(img) == width * height * 3 | |
| if img_type == 'grey': | |
| misc.imsave(outfile, img.reshape(width, height)) | |
| elif img_type == 'color': | |
| misc.imsave(outfile, img.reshape(3, width, height)) |
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| models_dir = 'models/' # dir to save/restore models | |
| data_dir = 'data/' # directory to store algorithm data | |
| summary_dir = 'logs/' # directory to store tensorflow summaries |
After running
python run_autoencoder.py
'./models/dae/' was created with the file 'checkpoint'
Where is the saved model?
Also the 'data/dae/img/' folder is empty
Traceback (most recent call last):
File "C:\Users\Narmadha\AppData\Local\Programs\Python\Python35\run_autoencoder.py", line 9, in
import datasets
ImportError: No module named 'datasets'
what is the solution for this error? pls help
how can we use denoise autoencoder for text file
I believe the datasets import comes from this script (credits: blackecho) https://github.com/blackecho/Deep-Learning-TensorFlow/blob/ddeb1f2848da7b7bee166ad2152b4afc46bb2086/yadlt/utils/datasets.py.
Another caveat (as of time of writing 4/10/18), the script uses old tensorflow syntax from r0.12 (https://stackoverflow.com/a/41066345/4855984)
i have this error i don't know how i can solve it
WARNING:tensorflow:From C:\Users\USER\Desktop\DAAE\autoencoder.py:108 in _initialize_tf_utilities_and_ops.: initialize_all_variables (from tensorflow.python.ops.variables) is deprecated and will be removed after 2017-03-02.
Instructions for updating:
Use tf.global_variables_initializer instead.
WARNING:tensorflow:Passing a GraphDef to the SummaryWriter is deprecated. Pass a Graph object instead, such as sess.graph.
Traceback (most recent call last):
File "run_autoencoder.py", line 82, in
dae.fit(trX, teX, restore_previous_model=FLAGS.restore_previous_model)
File "C:\Users\USER\Desktop\DAAE\autoencoder.py", line 98, in fit
self._train_model(train_set, validation_set)
File "C:\Users\USER\Desktop\DAAE\autoencoder.py", line 132, in _train_model
self._run_train_step(train_set, corruption_ratio)
File "C:\Users\USER\Desktop\DAAE\autoencoder.py", line 151, in _run_train_step
np.random.shuffle(shuff)
File "mtrand.pyx", line 4816, in mtrand.RandomState.shuffle
TypeError: object of type 'zip' has no len()
You need to wrap the zip(train_set, x_corrupted) in _run_train_step in a list. The line will become shuff = list(zip(train_set, x_corrupted)).
Great workl!
But the mse loss implementation In the _create_cost_function_node of autoencoder.py seems to be wrong?
Should it be self.cost = tf.reduce_mean(tf.reduce_sum(tf.square(self.input_data - self.decode),1)) ?
We should do reduce sum before reduce_mean and no need for square root I suppose?
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somehow the datasets package is missing and can't be installed with pip, is this for python3 or python2 ?