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Creates a bandstructure path from a cif file to convert it to a d3 crystal input file. (c) @freedatensuppe
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#!/usr/bin/env python3 | |
import sys | |
from pymatgen.core import Structure | |
from pymatgen.symmetry.bandstructure import HighSymmKpath | |
# ingore warnings | |
import warnings | |
warnings.filterwarnings("ignore") | |
# Check if input file is given | |
if len(sys.argv) < 2: | |
print("Usage: get_bs_path.py <cif-inputfile>") | |
print( | |
"Usage: get_bs_path.py <cif-inputfile> convention (0,1,2) for high symmpath" | |
) | |
print( | |
"convention types = setyawan_curtarolo (default), hinuma, latimer_munro" | |
) | |
sys.exit(1) | |
# Read input file | |
inputfile = sys.argv[1] | |
path_types = ["setyawan_curtarolo", "hinuma", "latimer_munro"] | |
if len(sys.argv) == 2: | |
path_type = path_types[0] | |
if len(sys.argv) > 2: | |
conv = int(sys.argv[2]) | |
path_type = path_types[conv] | |
# Read structure from input file | |
struc = Structure.from_file(inputfile, 0) | |
kplm = HighSymmKpath(struc, path_type=path_type) | |
path_kpath = kplm.kpath | |
struc2 = struc.get_primitive_structure() | |
kplm2 = HighSymmKpath(struc2, path_type=path_type) | |
path_kpath2 = kplm2.kpath | |
new_labels = kplm2.kpath["path"] | |
kpoints = kplm2.kpath["kpoints"] | |
segments = [[kpoints[i] for i in s] for s in new_labels] | |
k_vector = 12 | |
length = sum([len(s) - 1 for s in new_labels]) | |
labelraw = " | ".join(['–'.join(l) for l in new_labels]) | |
labelstring = labelraw.replace("\\Gamma", "G") | |
printlabels = [[i if i != "\\Gamma" else "G" for i in l] for l in new_labels] | |
print("BAND") # header | |
print("# ", labelstring) # labels | |
print(length, k_vector, 300, 1, 100, 1, 0) | |
for a, s in enumerate(segments): | |
for i in range(len(s) - 1): | |
for j in s[i]: | |
print("% 5.5f" % (j * k_vector), end=" ") | |
print(" ", end="") | |
for k in s[i + 1]: | |
print("% 5.5f" % (k * k_vector), end=" ") | |
print(" # % 3s " % printlabels[a][i], end=" ") | |
print("% 3s " % printlabels[a][i + 1], end="\n") | |
print("END") # end |
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