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gamazeps/scrna_costs.md

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scrna_costs.md

Droplet-based barcoding: 100 - 100k cells (10x genomics)

Item Cost Number of experiments
GEM-X Universal 3' Gene Expression v4, 16 samples $24500 16
Chromium GEM-X Single Cell 3' Chip Kit v4, 4 chips $1400 32
Dual Index Kit TT Set A, 96 rxn $1100 96
500M 2x150 reads (25k/cell) on Aviti Medium Output $1100 1
Total per xp (20k cells) $2700 1
Cost per cell (25k reads) $0.14

Split-pool barcoding: 100k - 10M cells (Parse Bioscience or Scale Bioscience)

Item Cost Number of experiments
Parse Bioscience Evercode WT v3 $10000 1
25B 2x150 reads (25k/cell) on NovaseqX 25B or MGI T20 $16500 1
Total per xp (1M cells) $26500 1
Cost per cell (25k reads) $0.03
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